KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:09 2014 Check: 00 .. Name: ENSP00000285949/1-522 Len: 542 Check: 1828 Weight: 1.00 Name: ENSBTAP00000050244/1-523 Len: 542 Check: 640 Weight: 1.00 Name: ENSTTRP00000011755/1-398 Len: 542 Check: 6713 Weight: 1.00 Name: bmy_11528T0/1-542 Len: 542 Check: 1739 Weight: 1.00 Name: BACU012467/1-523 Len: 542 Check: 9961 Weight: 1.00 // 1 50 ENSP00000285949/1-522 MFPWGLSCLS VLGAAGTALL CAGLLLSLAQ HLWTLRWMLS RDRASTLPLP ENSBTAP00000050244/1-523 MLPWGLSCLS ALGAVGTALL GAGLLLSLAQ HLWTLRWTLS RDRASALPLP ENSTTRP00000011755/1-398 MLPWGLSCLS VLGAAGTALL CAGLLLSLAQ HLWTLRWTLS RDRASALPLP bmy_11528T0/1-542 MFPWGLSCLS VLGAAGTALL CAGLLLSLAQ HLWTLRWTLS RDRASALPLP BACU012467/1-523 MFPWGLSCLS VLGAAGTALL CAGLLLSLAQ HLWTLRWTLS RDRASALPLP 51 100 ENSP00000285949/1-522 KGSMGWPFFG ETLHWLVQGS RFHSSRRERY GTVFKTHLLG RPVIRVSGAE ENSBTAP00000050244/1-523 KGSMGWPFFG ETLHWLVQGS RFHSSRRERY GTVFKTHLLG RPVIRVSGAE ENSTTRP00000011755/1-398 KGSMGWPFFG ETLHWLVQGS RFHSSRRERY GTVFKTHLLG RPVIRVSGAE bmy_11528T0/1-542 KGSMGWPFFG ETLHWLVQGS RFHSSRRERY GTVFKTHLLG RPVIRVSGAE BACU012467/1-523 KGSMGWPFFG ETLHWLVQGS RFHSSRRERY GTVFKTHLLG RPVIRVSGAE 101 150 ENSP00000285949/1-522 NVRTILLGEH RLVRSQWPQS AHILLGSHTL LGAVGEPHRR RRKVLARVFS ENSBTAP00000050244/1-523 NVRTVLLGEH RLVRSQWPQS AHILLGSHTL LGAVGESHRQ RRKILARAFS ENSTTRP00000011755/1-398 NVRTILLGEH RLVRSQWPQS AHILLGSHTL LGAVGEPHRQ RRKILARVFN bmy_11528T0/1-542 NVRTILLGEH RLVRSQWPQS AHILLGSHTL LGAVGEPHRQ RRKILARVFN BACU012467/1-523 NVRTILLGEH RLVRSQWPQS AHILLGSHTL LGAVGEPHRQ RRKILARVFN 151 200 ENSP00000285949/1-522 RAALERYVPR LQGALRHEVR SWCAAGGPVS VYDASKALTF RMAARILLGL ENSBTAP00000050244/1-523 RAALECYVPR LQRALRREVR SWCAARGPVA VYEAAKALTF RMAARILLGL ENSTTRP00000011755/1-398 RAALERYVPR LQEALRREVR SWCATRGPVA VYEAAKALTF RMAARILLGL bmy_11528T0/1-542 RAALERYVPR LQGALRHEVR SWCATRGPVA VYEAAKALTF RMAARILLGL BACU012467/1-523 RAALERYVPR LQGALRREVR SWCATRGPVA VYEAAKALTF RMAARILLGL 201 250 ENSP00000285949/1-522 RLDEAQCATL ARTFEQLVEN LFSLPLDVPF SGLRKGIRAR DQLHRHLEGA ENSBTAP00000050244/1-523 RLDEAQCSEL ARTFEQFVEN LFSLPLDVPF SGLRKGIRAR DQLHRHLEEA ENSTTRP00000011755/1-398 RLDEAQCSEL ARTFEQFVEN LFSLPLDVPF SGLRKGIRAR DQLHRHLEEA bmy_11528T0/1-542 RLDEAQCSEL ARTFEQFVEN LFSLPLDVPF SGLRKGIRAR DQLHRHLEEA BACU012467/1-523 RLDEAQCSEL ARTFEQFVEN LFSLPLDVPF SGLRKGIRAR DQLHRHLEEA 251 300 ENSP00000285949/1-522 ISEKLHEDKA A-EPGDALDL IIHSARELGH EPSMQELK-- ---------- ENSBTAP00000050244/1-523 IAQKLLEDKT AVEPGDALDG IIHSTRELGH ELSVQELK-- ---------- ENSTTRP00000011755/1-398 IAEKLHEDKA AAEPGDALDG IIHSTRELGH ELSVQELK-- ---------- bmy_11528T0/1-542 IAEKLHEDKA AAEPGDALDG IIHSTRELGH ELSVQELKGA EAEAQLMETQ BACU012467/1-523 IAEKLHEDKA AAEPGDALDG IIHSTRELGH ELSVQELK-- ---------- 301 350 ENSP00000285949/1-522 -------ESA VELLFAAFFT TASASTSLVL LLLQHPAAIA KIREELVAQG ENSBTAP00000050244/1-523 -------ESA VELLFAAFST TASASTSLVL LLLQHPAAIA KIQQELAAQG ENSTTRP00000011755/1-398 -------XXA VELLLAAFVT RASASTSLVL LLRQHPAAIA QIRQELAAQG bmy_11528T0/1-542 RSRAVLQESA VELLFAAFFT TASASTSLVL LLLQHPGAIA KIQQELAAQG BACU012467/1-523 -------ESA VELLFAAFFT TASASTSLVL LLLQHPGAIA KIQQELAAQG 351 400 ENSP00000285949/1-522 LGRACGCAPG AAGGSEGPPP DCGCEPDLSL AALGRLRYVD CVVKEVLRLL ENSBTAP00000050244/1-523 LGRACGCAPA ASGGGAGPPP DCGCEPDLSL ATLGHLRYVG CVVKEVLRLL ENSTTRP00000011755/1-398 LGRASGCVPS ALGGGAGPPA NCGCEPDLSL AALGRLRYVG CVVKEVLRLL bmy_11528T0/1-542 LGRACGCVPA ASGGGAGPPA NCGCEPDLSL AALGRLRYVG CVVKEVLRLL BACU012467/1-523 LGRACGCVPA ASGGGAGPPA NCGCESDLSL AALGRLRYVG CVVKEVLRLL 401 450 ENSP00000285949/1-522 PPVSGGYRTA LRTFELDGYQ IPKGWSVMYS IRDTHETAAV YRSPPEGFDP ENSBTAP00000050244/1-523 PPVSGGYRTA LRTFELDGYQ IPKGWNVMYS IRDTHETAAV YRSPPEGFDP ENSTTRP00000011755/1-398 PPVSGVYRTA LRTFELD--- ---------- ---------- ---------- bmy_11528T0/1-542 PPVSGGYRTA LRTFELDGYQ IPKGWNVMYS IRDTHETAAV YRSPPEGFDP BACU012467/1-523 PPVSGGYRTA LRTFELDGYQ IPKGWNVMYS IRDTHETAAV YRSPPEGFDP 451 500 ENSP00000285949/1-522 ERFGAAREDS RGASSRFHYI PFGGGARSCL GQELAQAVLQ LLAVELVRTA ENSBTAP00000050244/1-523 ERFGTAGDDA LGAAGRFHYI PFGGGARSCL GQELAQTVLQ LLAVELVRTA ENSTTRP00000011755/1-398 ---------- ---------- ---------- ---------- ---------- bmy_11528T0/1-542 ERFCTEGEDV RGAAGRFHYI PFGGGARSCL GQELAQTVLQ LLAVELVRTA BACU012467/1-523 ERFGNEGEDA RGAAGRFHYI PFGGGARSCL GQELAQTVLQ LLAVELVRTA 501 550 ENSP00000285949/1-522 RWELATPAFP AMQTVPIVHP VDGLRLFFHP LTPSVAGNGL CL ENSBTAP00000050244/1-523 RWELATPAFP AMQTVPIVHP VDGLRLFFHP LASPAAQDGQ RL ENSTTRP00000011755/1-398 ---------- ---------- ---------- ---------- -- bmy_11528T0/1-542 RWELATPAFP AMQTVPIVHP VDGLRLFFHP LAPSAAQDGR RL BACU012467/1-523 RWELATPAFP AMQTVPIVHP VDGLRLFFHP LAPSAAQDGR RL