KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:00:10 2014 Check: 00 .. Name: ENSP00000216241/1-762 Len: 766 Check: 9209 Weight: 1.00 Name: ENSBTAP00000050251/1-724 Len: 766 Check: 4008 Weight: 1.00 Name: bmy_00997T0/1-688 Len: 766 Check: 4993 Weight: 1.00 Name: ENSTTRP00000003146/1-745 Len: 766 Check: 5367 Weight: 1.00 // 1 50 ENSP00000216241/1-762 -MEGPRSSTH VPLVLPLLVL LLLAPARQAA AQRCPQACIC DNSRRHVACR ENSBTAP00000050251/1-724 LSARPQS--- LSLVLLLPLL LPLGPNRCAV AQRCPQACVC DNPRRHVACR bmy_00997T0/1-688 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003146/1-745 -MAGPQS--- VSVVLLLPLL LPLGPTWHAA AQRCPQTCVC DNSRRHVACR 51 100 ENSP00000216241/1-762 YQNLTEVPDA IPELTQRLDL QGNLLKVIPA AAFQGVPHLT HLDLRHCEVE ENSBTAP00000050251/1-724 HQNLTEVPTA IPELTQRLDL QGNMLKEIPP AAFRDLPHLT HLDLRRCQVE bmy_00997T0/1-688 ---------- ---------- ---MLKLIPP AAFRDLPYLT HLDLRHCQVE ENSTTRP00000003146/1-745 HQNLTEVPNA IPELTQRLDL QGNMLKLIPP AAFRDLPYLT HLDLRHCQVE 101 150 ENSP00000216241/1-762 LVAEGAFRGL GRLLLLNLAS NHLRELPQEA LDGLGSLRRL ELEGNALEEL ENSBTAP00000050251/1-724 LVAEGAFRGL GRLLLLNLAS NRLRALPQEA LDGLGSLQRL ELAGNLLEEL bmy_00997T0/1-688 LVAEGAFRGL GRLLLLNLAS NRLNALPQEA LDGLGSLQRL ELEGNLLEEL ENSTTRP00000003146/1-745 LVAEGAFRGL GRLLLLNLAS NRLNALPQEA LDGLGSLRRL ELEGNLLEEL 151 200 ENSP00000216241/1-762 RPGTFGALGA LATLNLAHNA LVYLPAMAFQ GLLRVRWLRL SHNALSVLAP ENSBTAP00000050251/1-724 RPGTFGALGA VTTLNLAHNA LVYLPAMAFQ GLVRARWLQL SHNALSVLAP bmy_00997T0/1-688 RPGTFGALGA LATLNLAHNA LVYLPAMAFQ GLVRARWLQL SYNALSVLAP ENSTTRP00000003146/1-745 RPGTFGALGA LATLNLAHNA LVYLPAMAFQ GLVRARWLQL SHNALSVLAP 201 250 ENSP00000216241/1-762 EALAGLPALR RLSLHHNELQ ALPGPVLSQA RGLARLELGH NPLTYAGEED ENSBTAP00000050251/1-724 EALAGLPALR RLSLHHNELQ ALPGAALSQA RGLARLELGH NPFTYTGEED bmy_00997T0/1-688 EALAGLPALR RLSLHHNELQ SLPGATLSQA RGLARLELGH NPFTYTGEED ENSTTRP00000003146/1-745 EALAGLPALR RLSLHHNELQ SLPGATLSQA RGLARLELGH NPFTYTGEED 251 300 ENSP00000216241/1-762 GLALPGLREL LLDGGALQAL GPRAFAHCPR LHTLDLRGNQ LDTLPPLQGP ENSBTAP00000050251/1-724 GLALPGLREL RLDHGALQAL DARAFARCPR LHTLDLRGNQ LDALPPLQGP bmy_00997T0/1-688 GLVLPGLREL RLDHGALQAL DPRAFAHCPR LHTLDLRGNQ LDALQPLQGP ENSTTRP00000003146/1-745 GLVLPGLREL RLDHGALQAL DPRAFAHCPR LHTLDLRGNQ LDALQPLQGP 301 350 ENSP00000216241/1-762 GQLRRLRLQG NPLWCGCQAR PLLEWLARAR VRSDGACQGP RRLRGEALDA ENSBTAP00000050251/1-724 GQLRRLRLQG NPLWCGCRAR PLLEWLARAR VRSDGACWGP RRLRGEALDA bmy_00997T0/1-688 GQLRRLRLQG NPLRCDCRAR PLLQWLARAR VRSDGACGGP RRLRGEALDA ENSTTRP00000003146/1-745 GQLRRLRLQE NPLRCDCRAR PLLQWLARAR VRSDGACGEP RRLRGEALDA 351 400 ENSP00000216241/1-762 LRPWDLRCPG DAAQEEEELE ERAVAGPRAP PRGPPRGPGE ERAVAPCPRA ENSBTAP00000050251/1-724 LRPSDLRCPR PGAEEEEEAE ELKAARPRAP GDAPGEEAG- --AAGPCPRT bmy_00997T0/1-688 LRPSDLRCPR AGAEEEE--E EVAAARPRAP AGTSKEKAG- --AAGPCPRA ENSTTRP00000003146/1-745 LRPSDLRCPG AGAEEEE--E EVSAARPRVP -DGPPEKAG- --AARPCPRA 401 450 ENSP00000216241/1-762 CVCVPESRHS SCEGCGLQAV PRGFPSDTQL LDLRRNHFPS VPRAAFPGLG ENSBTAP00000050251/1-724 CVCVPESRHS SCEGRGLQAV PRGFPNDTQL LDLRRNRFPV VPQAAFPGLG bmy_00997T0/1-688 CVCAPESRHS SCEGRGLQVV PRGFPNDTQL LDLRQNHFPL VPREAFPGLG ENSTTRP00000003146/1-745 CVCAPESRHS SCEDRGLQVV PRGFPNDTQL LDLRQNHFPL VPREAFPGLG 451 500 ENSP00000216241/1-762 HLVSLHLQHC GIAELEAGAL AGLGRLIYLY LSDNQLAGLS AAALEGAPRL ENSBTAP00000050251/1-724 RLVSLHLQHC GLTELEAGAL AGLDSLIYLY LADNRLSGLS AAALEGAPRL bmy_00997T0/1-688 QLVSLHLQHC GITELEAGAL AGLGSLLYLY LSDNTLSSLS AASLEGAPCL ENSTTRP00000003146/1-745 QLVSLHLQHC GITELEAGAL AGLGSLLYLY LSDNSLSSLS AASLEGAPCL 501 550 ENSP00000216241/1-762 GYLYLERNRF LQVPGAALRA LPSLFSLHLQ DNAVDRLAPG DLGRTRALRW ENSBTAP00000050251/1-724 GYLYLERNRF VRMPGAALLA LPSLFSLHLQ DNALDHLA-- ---------- bmy_00997T0/1-688 GYLYLERNRF LQVPGAALRA LPSLFSLHLQ DNALDRLALG DLAGVRALRW ENSTTRP00000003146/1-745 GYLYLERNRF LQVPGAALRA LPSLFSLHLQ ENALDRLALG DLAGMRALRW 551 600 ENSP00000216241/1-762 VYLSGNRITE VSLGALGPAR ELEKLHLDRN QLREVPTGAL EGLPALLELQ ENSBTAP00000050251/1-724 ---------- ---------- ---QLHLDRN QLGEVPTEAL EGLPALLELQ bmy_00997T0/1-688 LYLSGNRITQ VSPGALGPAQ ELEKLHLDRN ELREVPTAAL EGLPALLELQ ENSTTRP00000003146/1-745 LYLSGNRITQ VSPGALGPAQ ELEKLHLDRN QLREVPTAAL EGLPALLELQ 601 650 ENSP00000216241/1-762 LSGNPLRALR DGAFQPVGRS LQHLFLNSSG LEQICPGAFS GLGPGLQSLH ENSBTAP00000050251/1-724 LSGNPLGALR DGAFRPVGRS LQHLFLNSSG LEQISPGAFS GLGPRLRSLH bmy_00997T0/1-688 LSGNPLRALR DGAFWPVGHS LQHLFLNSSG LEQISPGAFS GLGPRLQSLH ENSTTRP00000003146/1-745 LSGNPLRALQ DGAFWPVGRS LQHLFLNSSG LEQISPGAFL GLGPRLQSLH 651 700 ENSP00000216241/1-762 LQKNQLRALP ALPSLSQLEL IDLSSNPFHC DCQLLPLHRW LTGLNLRVGA ENSBTAP00000050251/1-724 LQKNQLQTLP ALPGLGELEL VDLSGNPFHC DCQLLPLHRW LAGLNLRVGA bmy_00997T0/1-688 LQKNQLQALP ALPGLSQLEL IDLSGNPFHC DCQLLPLHRW LTGLNLRVGA ENSTTRP00000003146/1-745 LQKNQLQDLP ALPGLSQLEL IDLSGNPFHC DCQLLPLHRW LTGLNLHVGA 701 750 ENSP00000216241/1-762 TCATPPNARG QRVKAAAAVF EDCPGWAARK AKRTPASRPS ARRTPIKGRQ ENSBTAP00000050251/1-724 TCATPPSARG QRVKAAAAVF EACPGQAARK AKRTPAPRPG AWGTPTKGRR bmy_00997T0/1-688 ACAAPPSARG QRVKAAAAVF EACPGWAARK AKRTPAPRPS VRRTPMRGRR ENSTTRP00000003146/1-745 TCAAPPSARG QSVKAAAAVF EACPGWAAGK AKRTPAPRPS AQRTPMKGRW 751 800 ENSP00000216241/1-762 CGADKVGK-- EKGRL- ENSBTAP00000050251/1-724 QRANKEYKGL EGHGL- bmy_00997T0/1-688 QGANKVGRGQ VQGGLA ENSTTRP00000003146/1-745 QGANK----- ------