KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:11 2014 Check: 00 .. Name: ENSP00000381213/1-708 Len: 731 Check: 7658 Weight: 1.00 Name: ENSBTAP00000050301/1-681 Len: 731 Check: 4412 Weight: 1.00 Name: ENSTTRP00000008908/1-713 Len: 731 Check: 4717 Weight: 1.00 Name: bmy_19212T0/1-708 Len: 731 Check: 9439 Weight: 1.00 Name: BACU008830/1-709 Len: 731 Check: 8784 Weight: 1.00 // 1 50 ENSP00000381213/1-708 MATSTSTEAK SASWWNYFFL YDGSKVKEEG DPTRAGICYF YPSQTLLDQQ ENSBTAP00000050301/1-681 MAASTSTESK LASWWNYFFL YDGSQVKGEE DPTRAGICYF YPPQTLLDQQ ENSTTRP00000008908/1-713 -----TAPFC SLDRWNYFFL YDGSKVKGEG DPTRAGICYF FPPQTLLDQQ bmy_19212T0/1-708 -MEGNTAPFC SLDRWNYFFL YDGSKVKGEG DPTRAGICYF FPPQTLLDQQ BACU008830/1-709 MATSTSTETK SASWWNYFFL YDGSKVKGEG DPTRAGICYF FPPQTLLDQQ 51 100 ENSP00000381213/1-708 ELLCGQIAGV VRCVSDISDS PPTLVRLRKL KFAIKVDGDY LWVLGCAVEL ENSBTAP00000050301/1-681 ELLCGQIAGV VHCVSHISGS PPALVRLRKL KFAVKVDGDY LWVLGCAAEL ENSTTRP00000008908/1-713 ELLCGQIAGV VHCISDISGS PPTIVRLRKL KFAIKVDGDY LWVLGCAVEL bmy_19212T0/1-708 ELLCGQIAGV VHCISDISGS PPTVVRLRKL KFAIKVDGDY LWVLGCAVEL BACU008830/1-709 ELLCGQIAGV VHCISDISGS PPTVIRLRKL KFAIKVDGDY LWVLGCAVEL 101 150 ENSP00000381213/1-708 PDVSCKRFLD QLVGFFNFYN GPVSLAYENC SQEELSTEWD TFIEQILKNT ENSBTAP00000050301/1-681 PDVSCRQLLH RLVGFFHFCN GPVSLACKSC PREELRSEWD TLIEHILGNT ENSTTRP00000008908/1-713 PDVSCKQLLD QLIGFFNFYN GPVSLAYKSC SREELSGEWD TFIDQILRNT bmy_19212T0/1-708 PDVSCKQLLD QLIGFFNFYN GPVSLAYKSC SREELSGEWD TFIDQILRNT BACU008830/1-709 PDVSCKQLLD QLIGFFNFYN GPVSLAYKSC SREELSGEWD TFIDQILRNT 151 200 ENSP00000381213/1-708 SDLHKIFNSL WNLDQTKVEP LLLLKAARIL QTCQRSPHIL AGCILYKGLI ENSBTAP00000050301/1-681 GDLHKIFNCL WHLDQTKVEA LLLLKAALIL QTCQRAPHVL AGCILYAGLI ENSTTRP00000008908/1-713 GDLHKIFNSL WNLDRTKVEP LLLLKAALIL QTCQRSPHVL AGCILYKGLI bmy_19212T0/1-708 GDLHRIFNSL WNLDRTKVEP LLLLKAALIL QTCQRSPHVL AGCILYKGLI BACU008830/1-709 GDLHRIFNSL WNLDRTKVEP LLLLKAALIL QTCQRSPHVL AGCILYKGLI 201 250 ENSP00000381213/1-708 VSTQLPPSLT AKVLLHRTAP QEQRLPTGED APQEHG---- ---------- ENSBTAP00000050301/1-681 VSTQLPPSVT AKVLLHRMAR RDQRKPTGGD ALQERG---- ---------- ENSTTRP00000008908/1-713 VSTQLPPSVT AKVLLHRAAR RDQRKPLGGD ALEEHGKISF KHKVTHQNPS bmy_19212T0/1-708 VSTQLPPSVT AKVLLHRAAR RDQRKPIGGD ALQEHG---- ---------- BACU008830/1-709 VSTQLPPSVT AKVLLHRAAR RDQRTPIGGD APQEHG---- ---------- 251 300 ENSP00000381213/1-708 AALPPNVQII PVFVTKEEAI SLHEFPVEQM TRSLASPAGL QDGSAQHHPK ENSBTAP00000050301/1-681 VVLPPNVQIT PVFLTEEEAA SLREFPREPS ASAPAPPARL QEPSA----- ENSTTRP00000008908/1-713 AALPPNVQIV PVFLTEEEAV SLREFPREPT TSTLASPARL PEPPAQRPPK bmy_19212T0/1-708 AALPPDVQIV PVFLTEEEAV SLREFPREPT TSTLASPARL PEPPAQRPPK BACU008830/1-709 AALPPDVQIV PVFLTEEEAV SLREFPREPM TSTLASPARL LEPPAQRPPK 301 350 ENSP00000381213/1-708 GGSTSALKEN ATGHVESMAW ---TTPDPTS PDEACPDGRK ENGCLSGHDL ENSBTAP00000050301/1-681 -----APKEN APGHAGSKAQ TSTTTPEPPS PDAALADGSR GHGHWSGPDL ENSTTRP00000008908/1-713 GLNTSAPKEN APRHVESTAR ISATSPEPTS PDITWPNGSG ENGHWSDCDL bmy_19212T0/1-708 GLNTSAPKEN APRHVGSTAR ISATTPEPRS PDVTWPNGSG ENGHWSGCDL BACU008830/1-709 SLNTSAPKEN TPRHAGSTAR ISATTPEPRS PDVTWPNGSG ENGHWSGCDL 351 400 ENSP00000381213/1-708 ESIRPAGLHN SARGEVLGLS SSLGKELVF- -LQEELDLSE IHIPEAQEVE ENSBTAP00000050301/1-681 KSTPPALQHC TAAGKGSALF V--------- -GNGHLDLSE IHIPEAQKTE ENSTTRP00000008908/1-713 KSIKLPTPYH AAGGRGPGLG LSLVKETF-- -VQEELDLSE IHVPEAQDTG bmy_19212T0/1-708 KSIKPPTPHH TTRGQGPGLG LSLVKETGLS RGEEELDLSE IHVPEAQDTG BACU008830/1-709 KSIKPPTLHH TTRGQGPGLG LSLVKETGLS RGEEELDLSE IHVPEAQDTG 401 450 ENSP00000381213/1-708 MASGHFAFLH VPVPDGRAPY CKASLSASSS LEPTPPEDTA ISSLR----P ENSBTAP00000050301/1-681 ASPGH----- -PAADGGGPG CEESVHNPGS PEAKPPGVLS LGRL-----P ENSTTRP00000008908/1-713 ASLGY----- -SASAGGPPG CRASVSDSGN PEAT-PEALP VGTAVEGPLP bmy_19212T0/1-708 ASLGY----- -SASDGGPPG CRASVSDSGN PGSKPPEALP VGTAVGGPLP BACU008830/1-709 ASLGY----- -SASDGGPPG CRASVSDSGN AGSKPPEALP VGTAVGGPLP 451 500 ENSP00000381213/1-708 PSAPEMLTQH GAQEQLEDHP GHSSQAPIPR ADPLPRRTRR PLLLPRLDPG ENSBTAP00000050301/1-681 ASAPEVVPQN GALEQPADLP GDGSQAPIPR KDHVPSRTSG PGRAPCLDLR ENSTTRP00000008908/1-713 PSTAEMLTQN GALERPRDLP GNSSQAPVPR -DHLLSPTSG PLPSPCLDSR bmy_19212T0/1-708 PSTPGMLTQN GALERPRDLP GNSSQAPVPR -DHLLSPASG PLPSPCLDSR BACU008830/1-709 PSTPGMLTQN GALERPRDLP GNSSQAPVPR -DHLLGPASG PLPSPCLDSR 501 550 ENSP00000381213/1-708 QRGNKLPTGE QGLDEDVDGV CESHAAPGLE CSSGSANCQG AGPSADGISS ENSBTAP00000050301/1-681 QKNTEQPLEE HGGEQRHSGA PEGCLTPGPD ----STDPSD EGPSANRTAS ENSTTRP00000008908/1-713 QTGSELPVGE QGEGQHGDGV PEGRSASSPE RASGSADPPG DGPSADRTGS bmy_19212T0/1-708 QTGTELPVGE QGEGQRGDGV PEGHSASGPE RTSGSADPPG DGPSADRTGS BACU008830/1-709 QTGTELPVGE QGEGQRGDGV PEGRSASGPE RTSGSADPPG DGPSADRPGS 551 600 ENSP00000381213/1-708 RLTPAESCMG LVRMNLYTHC VKGLVLSLLA EEPLLGDSAA IEEVYHSSLA ENSBTAP00000050301/1-681 RVSPA-SREG LVRMNLYTHS VKGLVLSLLA EEPLLGDRVA VEEVYHGSLA ENSTTRP00000008908/1-713 RATPV-SLAR LVRMNLYTHR VRGLALLLLA EEPLLGDGAA IEDVYHGSLA bmy_19212T0/1-708 RATPA-SRTR LVRMNLYTHS VRGLVLLLLA EEPLLGDGTA VEDVYHGSLA BACU008830/1-709 RATPA-SRTR LVRMNLYTHS VRGLVLLLLA EEPLLGDGMA VEDVYHGSLA 601 650 ENSP00000381213/1-708 SLNGLEVHLK ETLPRDEAAS TSSTYNFTHY DRIQSLLMAN LPQVATPQDR ENSBTAP00000050301/1-681 SLNGLEVHLS ETLPRDQAAP AARTYSFAHY DRVQNLLTAN LPQVTTAQDR ENSTTRP00000008908/1-713 SLNGLEVHLN ETLPQDQAAP AARTYGFAHY DRIQNVLAGN LPQVATAQDR bmy_19212T0/1-708 SLNGLEVHLN ETLPRDQAAP AARAYGFAHY DRVQNVLAAN LPQVATAQDR BACU008830/1-709 SLNGLEVHLN ETLPWDQAAP AARAYGFAHY DRVQNVLAAN LPQVATAQDR 651 700 ENSP00000381213/1-708 RFLQAVSLMH SEFAQLPALY EMTVRNASTA VYACCNPIQE TYFQQLAPAA ENSBTAP00000050301/1-681 RFLQAVSLMH SEFARLPTLY EVTVRNASTA VYACCNPVQE TYFQQLATAV ENSTTRP00000008908/1-713 RFLQAVSLMH SDFARLPALY EVTVXXXXXX XXXXXXXXXE TYFQQLAPAG bmy_19212T0/1-708 RFLQAVSLMH SDFARLPALY EVTVRNASTA VYACCSPVQE TYFQQLASAG BACU008830/1-709 RFLQAVSLMH SDFARLPALY EVTVRNASRA VCACCSPVQE TYFQQLASAG 701 750 ENSP00000381213/1-708 RSSGFPNPQD GAFSLSGKAK QKLLKHGVNL L ENSBTAP00000050301/1-681 RSSGFPNPQD GAFGLPGKAK QKLLKHGVNL L ENSTTRP00000008908/1-713 RSSGFPSPQD S-YSLPGKAK QKLLKHGVNL L bmy_19212T0/1-708 RSSGFPSPQD SAFSLPGKAK QKLLKHGVNL L BACU008830/1-709 RSSGFPSPQD SAFSLPGKAK QKLLKHGVNL L