KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:12 2014 Check: 00 .. Name: ENSP00000234170/1-1054 Len: 1080 Check: 7497 Weight: 1.00 Name: ENSBTAP00000050307/1-1060 Len: 1080 Check: 4237 Weight: 1.00 Name: ENSTTRP00000006509/1-1055 Len: 1080 Check: 4461 Weight: 1.00 Name: bmy_13518T0/1-1030 Len: 1080 Check: 4679 Weight: 1.00 Name: BACU019236/1-1066 Len: 1080 Check: 9807 Weight: 1.00 // 1 50 ENSP00000234170/1-1054 MAAVKEPLEF HAKRPWRPEE AVEDPDEEDE DNTSEAENGF SLEEVLRLGG ENSBTAP00000050307/1-1060 MAAAEKPLEF HAKRPWGPEK GLEDPDEDEE DDNDETEDAF SLQEVLRLGG ENSTTRP00000006509/1-1055 MAAAKKPLEF HAKRPWLPEE AVEDPDEDDE DANDEADDGF SLQEVLRLGG bmy_13518T0/1-1030 MAAAKKPLEF HAKRPWLPEE AVEDPDEDDE DANDEADDGF SLQEVLRLGG BACU019236/1-1066 MAAAKKPLEF HAKRPWLPEE AVEDPDEDDE DATDEADDGF SLQEVLRLGG 51 100 ENSP00000234170/1-1054 TK-------- ----QDYLML ATLDENEEVI DGGKKGAIDD LQQGELEAFI ENSBTAP00000050307/1-1060 TK-------- ----QDYLML AALDENEEVV DGGKKGAIDD FQQGELEAFI ENSTTRP00000006509/1-1055 TK-------- ----QDYLML TALDENEEVV DGGKKGAIDD LQQGELEAFI bmy_13518T0/1-1030 TK-------- ----QDYLML TALDENEEVV DGGKKGAIDD LQQGELEAFI BACU019236/1-1066 TKGMALDSKR RETQAHYLML TALDENEEVV DGGKKGAIDD LQQGELEAFI 101 150 ENSP00000234170/1-1054 QNLNLAKYTK ASLVEEDEPA EKENSSKKEV KIPKINNK-- NTAESQRTSV ENSBTAP00000050307/1-1060 QNLSLAKYAK GFLIEEDQPA KKEDDSKKES RVSKVDSKKQ KAAESE---- ENSTTRP00000006509/1-1055 KNLSLAKYAK AFLIEEDQPA KKQEGSKKEA RVSKVDNKKQ NTVESE---- bmy_13518T0/1-1030 QNLSLAKYAK AFLIEEDQPA KKQEASKKEA RVSKVDNKKQ NTAESE---- BACU019236/1-1066 QNLSLAKYAK AFLIEEDQPA KKQEASKKEA RVSKVDNKKQ NTAESE---- 151 200 ENSP00000234170/1-1054 NKVKNKNRPE PHSDENGSTT PKVKKDK-QN IFEFFERQTL LLRPGGKWYD ENSBTAP00000050307/1-1060 SKVKNKKRPE QHSDENNSAI TKAKKDKQQD IFEFFERQTL LLKSGGKWYD ENSTTRP00000006509/1-1055 SKVKNKKRPE QHSDENSSAI TKAKRDKQQD IFEFFERRTL LLKSGGKWYD bmy_13518T0/1-1030 SKVKNKKRPE QHSDENSSAI TKAKRDKQQD IFEFFERRTL LLKSGGKWYD BACU019236/1-1066 SKVKNKKRPE QHSDENSSAI TKAKRDKQQD IFEFFERRIL LLKSGGKWYD 201 250 ENSP00000234170/1-1054 LEYSNEYSLK PQPQDVVSKY KTLAQKLYQH EINLFKSKTN SQKGASSTWM ENSBTAP00000050307/1-1060 MEYSDEYCLE PQPRDVVSKY KALAQKLYEH EINLFKNKTN NQKGASSTWM ENSTTRP00000006509/1-1055 LEYSNEYSLG PQPQDVVSKY KTLAQKLYEH EINLFKNKTN NQKGASSTWM bmy_13518T0/1-1030 LEYSNEYSLG PQPRDVVSKY KTLAQKLYEH EINLFKNKTN NQKGASSTWM BACU019236/1-1066 LEYSNEYSLG PQPQDVVSKY KTLAQKLYEH EINLFKNKTN NQKGASSTWM 251 300 ENSP00000234170/1-1054 KAIVSSGTLG DRMAAMILLI QDDAVHTLQF VETLVNLVKK KGSKQQCLMA ENSBTAP00000050307/1-1060 KAIVSSGTLG DRMAAMILLI QDDAIHTLQF VETLVNLVKK KGSKQQCLMA ENSTTRP00000006509/1-1055 KAIVSSGTLG DRMAAMILLI QDDAIHTLQF VETLLNLVKK KGSKQQCLMA bmy_13518T0/1-1030 KAIVSSGTLG DRMAAMILLI QDDAIHTLQF VETLLNLVKK KGSKQQCLMA BACU019236/1-1066 KAIVSSGTLG DRMAAMILLI QDDAIHTLQF VETLLNLVKK KGSKQQCLMA 301 350 ENSP00000234170/1-1054 LDTFKELLIT DLLPDNRKLR IFSQRPFDKL EQLSSGNKDS RDRRLILWYF ENSBTAP00000050307/1-1060 LDTFKELLIT DLLPDNRKLR VFSQHPFNKL EQLSSGNRDS RDRRLILWYF ENSTTRP00000006509/1-1055 LDTFKELLIT DLLPDSRKLR IFSQHPFNQL EQLSSGNKDS RDTRLILWYF bmy_13518T0/1-1030 LDTFKELLIT DLLPDSRKLR IFSQHPFNKL EQLSSGNKDS RDRRLILWYF BACU019236/1-1066 LDTFKELLIT DLLPDSRKLR IFSQHPFNKL EQLSSGNKDS RDRRLILWYF 351 400 ENSP00000234170/1-1054 EHQLKHLVAE FVQVLETLSH DTLVTTKTRA LTVAHELLCN KPEEEKALLV ENSBTAP00000050307/1-1060 EHQLKHLVAE FVQVLETLSH DSLVATKTRA LVVAHELLCN KPEEEKAFLV ENSTTRP00000006509/1-1055 EHQLKHLVAE FVQVLDTLSH DSLVTTKIRA LVVAHELLCN KPEEEKALLV bmy_13518T0/1-1030 EHQLKHLVAX FVQVLETLSH DSLVTTKIRA LVVAHELLCN KPEEEKALLV BACU019236/1-1066 EHQLKHLVAE FVQVLETLSH DSLVTTKIRA LVVAHELLCN KPEEEKALLV 401 450 ENSP00000234170/1-1054 QVVNKLGDPQ NRIATKASHL LETLLCKHPN MKGVVSGEVE RLLFRSNISS ENSBTAP00000050307/1-1060 QVVNKLGDPQ NRIATKASHL LETLLCKHPN MKGVVCGEVE RLLFRSNISS ENSTTRP00000006509/1-1055 QVVNKLGDPQ NRIATKASHL LETLLCKHPN MKGVVCSEVE RLLFRSNISS bmy_13518T0/1-1030 HVVNKLGDPQ NRIATKASHL LETLLCKHPN MKGVVCSEVE RLLFRSNISS BACU019236/1-1066 HVVNKLGDPQ NRIATKASHL LETLLCKHPN MKGVVCSEVE RLLFRSNISS 451 500 ENSP00000234170/1-1054 KAQYYAICFL NQMALSHEES ELANKLITVY FCFFRTCVKK KDVESKMLSA ENSBTAP00000050307/1-1060 KAQYYAICFL NQMVLSHEES ELANKLITLY FCFFRTCIKK KDIESKMLSA ENSTTRP00000006509/1-1055 KAQYYAICFL NQMALSHEES ELANKLITLY FCFFRTCIKK KDIESKMLSA bmy_13518T0/1-1030 KAQYYAICFL NQMVLSHEES ELANKLITLY FCFFRTCIKK KDIESKMLSA BACU019236/1-1066 KAQYYAICFL NQMALSHEES ELANKLITLY FCFFRTCIKK KDIESKMLSA 501 550 ENSP00000234170/1-1054 LLTGVNRAYP YSQTGDDKVR EQIDTLFKVL HIVNFNTSVQ ALMLLFQVMN ENSBTAP00000050307/1-1060 LLTGVNRAYP YAQTADDKVR EQVDTLFKVL HVVNFNTSVQ ALMLLFQVMN ENSTTRP00000006509/1-1055 LLTGVNRAYP YAQTGDDKVR EQVDTLFKVL HMVNFNTSVQ ALMLLFQVMN bmy_13518T0/1-1030 LLTGVNRAYP YAQTGDDKVR EQVDTLFKVL HIVNFNTSVQ ALMLLFQVMN BACU019236/1-1066 LLTGVNRAYP YAQTGDDKVR EQVDTLFKVL HIVNFNTSVQ ALMLLFQVMN 551 600 ENSP00000234170/1-1054 SQQTISDRYY TALYRKMLDP GLMTCSKQAM FLNLVYKSLK ADIVLRRVKA ENSBTAP00000050307/1-1060 SQQTISDRYY AALYRKMLDP GLMLCSKQAM FLNLVYKSLK ADIVLRRVKA ENSTTRP00000006509/1-1055 SQQTISDRYY AALYRKMLDP GLMLCSKQAM FLNLVYKSLK ADIVLRRVKA bmy_13518T0/1-1030 SQQTISDRYY AALYRKMLDP GLMLCSKQAM FLNLVYKSLK ADIMLRRVKA BACU019236/1-1066 SQQTISDRYY AALYRKMLDP GLMLCSKQAM FLNLVYKSLK ADIMLRRVKA 601 650 ENSP00000234170/1-1054 FVKRLLQVTC QQMPPFICGA LYLVSEILKA KPGLRSQLDD HPESDDEENF ENSBTAP00000050307/1-1060 FVKRLLQVTC EQMPPFICGA LYLVSEILKA KPGLRSQLDD HPESDEEENF ENSTTRP00000006509/1-1055 FVKRLLQVTC EQMPPFICGA LYLVSEILKA KPGLRSQLDD PPEFDEEENF bmy_13518T0/1-1030 FVKRLLQVTC EQMPPFICGA LYLVSEILKA KPGLRSQLDD PPESDEEENF BACU019236/1-1066 FVKRLLQVTC EQMPPFICGA LYLVSEILKA KPGLRSQLDD PPESDEEENF 651 700 ENSP00000234170/1-1054 IDANDDEDME KFTDADKETE --IVKKLETE ETVPETDVET KKPEVASWVH ENSBTAP00000050307/1-1060 IDIADDEEAE KFTDVDKETE TDTVKKAEME ETESESHVGT KKVESASWVH ENSTTRP00000006509/1-1055 IDIGDDEETE KFTDADKETD TDTMKKVEME ETVSERHVET KKLESASWVH bmy_13518T0/1-1030 IDIGDDEETE KFTDADKETD TDTMKKVEME ETVSESHVET KKLESASWVH BACU019236/1-1066 IDIGDDEETE KFTDADKETD TDTMKKVEME ETVSESHVET KKLESASWVH 701 750 ENSP00000234170/1-1054 FDNLKGGKQL NKYDPFSRNP LFCGAENTSL WELKKLSVHF HPSVALFAKT ENSBTAP00000050307/1-1060 FDNLKGGKQL NTYDPFSRNP LYCGAENTSL WELKKLSEHF HPSVALFAKT ENSTTRP00000006509/1-1055 FDNLKGGKQL NTYDPFSRNP LFCGAENTSL WELKKLSEHF HPSVALFAKT bmy_13518T0/1-1030 FDNLKGGKQL NTYDPFSRNP LFCGAENTSL WELKKLSEHF HPSVALFAKT BACU019236/1-1066 FDNLKGGKQL NTYDPFSRNP LFCGAENTSL WELKKLSEHF HPSVALFAKT 751 800 ENSP00000234170/1-1054 ILQGNYIQYS GDPLQDFTLM RFLDRFVYRN PKPHKGKENT DSVVMQPKRK ENSBTAP00000050307/1-1060 ILQGNYIEYS GDPLQDFTLM RFLDRFVYRN PKPHKGKENT DSVVMQPKRK ENSTTRP00000006509/1-1055 ILQGNYVEYS GDPLQDFTLM RFLDRFVYRN PKPHKGKENT DSVVMQPKRK bmy_13518T0/1-1030 ILQGNYVEYS GDPLQDFTLM RFLDRFVYRN PKPHKGKENT DSVVMQPKRK BACU019236/1-1066 ILQGNYVEYS GDPLQDFTLM RFLDRFVYRN PKPHKGKENT DSVVMQPKRK 801 850 ENSP00000234170/1-1054 HFIKDIRHLP VNSKEFLAKE ESQIPVDEVF FHRYYKKVA- VKEKQKRDAD ENSBTAP00000050307/1-1060 HFMKDIRSLA VNSKEFLAKE ESQIPVDEVF FYRYYKKVTN VKVKQKRNED ENSTTRP00000006509/1-1055 HFMKDIRSLA VNSKEFLAKE ESQIPEDEVF FYRYYKKVAS VKLKQKRNED bmy_13518T0/1-1030 HFMKDIRSLA VNSKEFLAKE ESQIPVDEVF FYRYYKKVAS VKVKQKRNED BACU019236/1-1066 HFMKDIRSLA VNSKEFLAKE ESQIPVDEVF FYRYYKKVAS VKVKQKRNED 851 900 ENSP00000234170/1-1054 EESIEDVDDE EFEELIDTFE DDNCFSSGKD DMDFAGNVKK RTKGAKDNTL ENSBTAP00000050307/1-1060 EESIEDVDDE EFEKMIDTFE DDNCFTSGKD DLDFASNMKK KAKGAKDDSE ENSTTRP00000006509/1-1055 EESIEDVDDD EFEKMIDTFE DDNCFTSGKD DLDFASNMKK KAKGAKDDLE bmy_13518T0/1-1030 EESIEDVDDE EFEKMI---- ---------- ---------- -AKGAKDDLE BACU019236/1-1066 EESIEDVDDE EFEKMIDTFE EDNCFTSGKD DLDFASNMKK KAKGAKDDLE 901 950 ENSP00000234170/1-1054 DEDSEGSDDE LGNLDDDEVS LGSMDDEEFA EVDEDGGTFM DVLDDESESV ENSBTAP00000050307/1-1060 DEDSE--DDD LDNLDDDEVS LGSM-NEEFA EIEEDGGTFM DVLDDENEGI ENSTTRP00000006509/1-1055 DEDSE--DED LGNLDDDEVS LGSM-NKEFS EIEEDGGTFM DVLDDENEGI bmy_13518T0/1-1030 DEDSE--DED LGNLDDDEVS LGSM-NEEFS EIEEDGGTFM DVL-DENEGI BACU019236/1-1066 DEDSE--DED LGNLDDDEVS LGSM-NEEFS EIEEDGGTFM DVF-DENEGI 951 1000 ENSP00000234170/1-1054 PEL--EVHSK VSTKKSKRKG TDDFDFAGSF QGPR-KKKRN LNDSSLFVSA ENSBTAP00000050307/1-1060 PEVEDEVRLK VNNKKNKRKS ANDFDFAGSF QGPRKKKKRD FDDSNLFVSA ENSTTRP00000006509/1-1055 PELDDDVSFK VNSKKSKRKG ANDFDFAGSF QGPR-KKKRN FNDSNLFVSA bmy_13518T0/1-1030 PELDDDVSFK VNSKKSKRKG ANDFDFAGSF QGPRKKKKRN FNDSNLFVSA BACU019236/1-1066 PELDDDVSFK VNSKKSKRKG ANDFDFAGSF QGPRKKKKRN FNDSNLFVSA 1001 1050 ENSP00000234170/1-1054 EEFGHLLDEN MGSKFDNIGM NAMANKDNAS LKQLRWEAER DDWLHNRDAK ENSBTAP00000050307/1-1060 EEFGHLLDEN MGSKFDNIGM NAMANKDNAS LKQLRWEAER DDWLHNRDVK ENSTTRP00000006509/1-1055 EEFGHLLDEN MGSKFDNIGM NAMANKDNAS LKQLRWEAER DDWLHNRDVK bmy_13518T0/1-1030 EEFGHLLDEN MGSKFDNIGM NAMANKDNAS LKQLRWEAER DDWLHNRDVK BACU019236/1-1066 EEFGHLLDEN MGSKFDNIGM NAMANKDNAS LKQLRWEAER DDWLHNRDVK 1051 1100 ENSP00000234170/1-1054 SIIKKKKHFK KKRIKTTQKT KKQRK----- ENSBTAP00000050307/1-1060 SIIKRKKNFR -KRPRTTQKM KKQRKSVFSK ENSTTRP00000006509/1-1055 SIIKRKKNFR KKRPKTTQKI KKQRK----- bmy_13518T0/1-1030 SIIKRKKNFR NKRPKTTQKI KKQRK----- BACU019236/1-1066 SIIKRKKNFR -KRPKTTQKI KKQRK-----