KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:00:13 2014 Check: 00 .. Name: ENSBTAP00000050331/1-279 Len: 281 Check: 4444 Weight: 1.00 Name: ENSTTRP00000003709/1-227 Len: 281 Check: 7192 Weight: 1.00 Name: bmy_05519T0/1-208 Len: 281 Check: 7076 Weight: 1.00 Name: BACU018823/1-226 Len: 281 Check: 4103 Weight: 1.00 // 1 50 ENSBTAP00000050331/1-279 TELTCSPRKA MQDEDGYVTL NIKTQKPALT SEYKPMPTVE PAPSPLWRVM ENSTTRP00000003709/1-227 ---------- MQDEDGYVTL NIKTQKPAL- ------TSGD PASSSLWRVM bmy_05519T0/1-208 ---------- ---------- --------M- ------PTVD PASSSLWRVM BACU018823/1-226 ---------- MQDEDGYVAL NIKTQKPAL- ------TSVD PASSSLWRVM 51 100 ENSBTAP00000050331/1-279 ALTLLVLCVG MVVGLVALGL MLSLYFEQNK NEYSGITWKH NNRGHSPVMQ ENSTTRP00000003709/1-227 ALILLILSMG IAAGLVALGI M--------- ---------- ------SVTQ bmy_05519T0/1-208 ALILLILCMG MVVGLVALGI M--------- ---------- ------SVTQ BACU018823/1-226 ALILLILCMG MVVGLVALGI M--------- ---------- ------SVTQ 101 150 ENSBTAP00000050331/1-279 QNYLQAENEN LSGTMKLLVK KVCQDLIQLS GQKQ-SHKCN PCDTHWRYYG ENSTTRP00000003709/1-227 QKYLQAENEH LSGTLKQLAR KFCQDLLQQS RQKEKGHKCS PCDINWRYYG bmy_05519T0/1-208 QNYLQAENEH LSGTLKQLAR KFCQDLLQQS GQKE-SHKCS PCDIHWRYYG BACU018823/1-226 QNYLQAENEH LSGTLKQLAR KFCQDLLRQS GQKE-SHKCS PCDVHWRYYG 151 200 ENSBTAP00000050331/1-279 DSCYGFFRHN LTWEESKKYC IDVNATLVKI SSKSILVESI CQFYSEQYFN ENSTTRP00000003709/1-227 DSCYGFFRHN LTWKDSKKYC ADVNATLLKI TREDTL---- ------QYIS bmy_05519T0/1-208 DSCYGFFRHN LTWKDSKKYC ADVNATLLKI TREDML---- ------QYIS BACU018823/1-226 DSCYGFFRHN LTWKDSKKYC ADVNATLLKI TTEDML---- ------QYIS 201 250 ENSBTAP00000050331/1-279 SRTGLIRWIG LSRQKSSDVW RWEDGSVLSK TIHRLKLSGT GTENMNCAYF ENSTTRP00000003709/1-227 SRTGLIRWVG LSRQKPSDVW MWEDGSVPSK --NXXXXXXD CNRNMNCAYF bmy_05519T0/1-208 SRTGLIRWVG LSRQKSSDVW MWEDGSVPSK --HLFKLSGT ATENMNCAYF BACU018823/1-226 SRTGLIRWVG LSRQKSSDVW MWEDGSVPSK --HLFKLSGT ATENMNCAYF 251 300 ENSBTAP00000050331/1-279 HNGNIHPTFC ENRHYLMCER KAGVVKVEHL - ENSTTRP00000003709/1-227 HNGKIHPTFC ENKHYLMCER KAGMAKVDQL L bmy_05519T0/1-208 HNGKIHPTFC ENKHYLMCER KAGMAKVDQL L BACU018823/1-226 HNGKIHPTFC ENKHYLMCER KTGMAKVDQL L