KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 18:00:15 2014  Check: 00 ..

 Name: ENSP00000386195/1-313     Len:    313  Check:  8290  Weight:  1.00
 Name: ENSBTAP00000050397/1-313  Len:    313  Check:  8910  Weight:  1.00
 Name: bmy_19917T0/1-308         Len:    313  Check:  8525  Weight:  1.00
 Name: BACU008613/1-302          Len:    313  Check:  8098  Weight:  1.00

//


                          1                                                   50
ENSP00000386195/1-313     MDSLNQTRVT EFVFLGLTDN RVLEMLFFMA FSAIYMLTLS GNILIIIATV 
ENSBTAP00000050397/1-313  MDALNQTRVT QFVFLGLTDN WVLEILFFMA FSVMYVLTLL GNILIMVTIV 
bmy_19917T0/1-308         MDALKQTRVT QFVFLGLTDN WVLEILFFMA FSAMYVLTLW GNILIMVTIV 
BACU008613/1-302          MDALNQTRVT QFFFLGLTDN WVLEILFFMA FSAMYVLTLW GNILIMVTIV 


                          51                                                 100
ENSP00000386195/1-313     FTPSLHTPMY FFLSNLSFID ICHSSVTVPK MLEGLLLERK TISFDNCITQ 
ENSBTAP00000050397/1-313  FTPRLHIPMY FFLSNLSFID ICHSSVTVPK MLEGLLLERK TISFDNCIAQ 
bmy_19917T0/1-308         FTPRLSTPTY FFLSNLSFID ICHSSVTVLK TLEGLLFDRK TISFDNCIAQ 
BACU008613/1-302          FTPRLSTPMY FFLSNLSFID ICHSSVTVLK MLEGLLFDTK TISFDNCIAQ 


                          101                                                150
ENSP00000386195/1-313     LFFLHLFACA EIFLLIIVAY DRYVAICTPL HYPNVMNMRV CIQLVFALWL 
ENSBTAP00000050397/1-313  LFFLHLFACA EIFLLTVMAY DRYVAICVPL HYPNVMDMRV CVQLVFALWL 
bmy_19917T0/1-308         LFLLHLFACA EIFLLTIMAY DRYVAICAPL HYPNVMNMRV CVQLVFALWL 
BACU008613/1-302          LFFLHLFACA EIFLLTIMAY DRYVAICAPL HYPNVMNMRV CVQLVFVLWL 


                          151                                                200
ENSP00000386195/1-313     GGTVHSLGQT FLTIRLPYCG PNIIDSYFCD VPLVIKLACT DTYLTGILIV 
ENSBTAP00000050397/1-313  GGTIHSLVQT FLTIRLPYCG PNVIDSYFCD VPPVIKLACT DTYLTGMLIV 
bmy_19917T0/1-308         AGTVHSLVQT FLTIRLPYCG PNVIDSYFCD VPPVLKLACT DTCLTGMLIV 
BACU008613/1-302          AGTVHSLVQT FLTIRLPYCG PNVIDSYFCD VPPVIKLACT DTCLTGMLIV 


                          201                                                250
ENSP00000386195/1-313     TNSGTISLSC FLAVVTSYMV ILVSLRKHSA EGRQKALSTC SAHFMVVALF 
ENSBTAP00000050397/1-313  SNSGTISLFC FLALVTSYMV ILVSLRKQSA EGRRKALSTC SAHFMVVALF 
bmy_19917T0/1-308         SNSGTISLSC FLALVASYTI ILVSLRKQSA EGRRKALSTC LAHFVVVALF 
BACU008613/1-302          SNSGTISLSC FLALVASYTI ILVSLRKQSA EGRRKALSTC LAHFVVVALF 


                          251                                                300
ENSP00000386195/1-313     FGPCIFIYTR PDTSFSIDKV VSVFYTVVTP LLNPFIYTLR NEEVKSAMKQ 
ENSBTAP00000050397/1-313  FGPCIFLYTH PDTNFSSDKV VSVFYTMVTP VLNPLIYTLR NEEVKNAMKR 
bmy_19917T0/1-308         FGPCIFIYPQ PDTSFSTDKL VSVFYTVVTP LLNPFIYTLR NEEVKSAMKH 
BACU008613/1-302          FGPCIFIYTQ PDTSFSTDKL VCVFYTVVTP LLNPFIYTLR NEEVKSAMKH 


                          301                                                350
ENSP00000386195/1-313     LRQRQVFFTK SYT 
ENSBTAP00000050397/1-313  LRQRQVFSMK SCT 
bmy_19917T0/1-308         LRQRRVFS-- --- 
BACU008613/1-302          LR-------- ---