KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:15 2014 Check: 00 .. Name: ENSBTAP00000050413/1-727 Len: 776 Check: 288 Weight: 1.00 Name: ENSP00000424381/1-707 Len: 776 Check: 4143 Weight: 1.00 Name: ENSTTRP00000013251/1-665 Len: 776 Check: 5008 Weight: 1.00 Name: bmy_14616T0/1-705 Len: 776 Check: 4701 Weight: 1.00 Name: BACU013514/1-711 Len: 776 Check: 6649 Weight: 1.00 // 1 50 ENSBTAP00000050413/1-727 ---------- ---------- ------MCPP TGLYGPEGIL PARRTLRPQG ENSP00000424381/1-707 MAGSRLPRQL FLQGVAAVFM FAFASLYTQI PGLYGPEGIL PARRTLRPQG ENSTTRP00000013251/1-665 ---------- ---------- ------LCPL TGLYGPDGIL PARRTLRPQG bmy_14616T0/1-705 MAGSRLPRQL FLQGVAAVFM FAFASLYTQI PGLYGPEGIL PARRTLRPQG BACU013514/1-711 ---------- ---------- ---------- MRLYGPEGIL PARRTLRPQG 51 100 ENSBTAP00000050413/1-727 KGRWQQLWET PTLLWEAPLL GLDTAQGLEL LSLLGTVLAL GALLTRQLRH ENSP00000424381/1-707 KGRWQQLWET PTLLWEAPRL GLDTAQGLEL LSLLGALVAL GALLLSPLRH ENSTTRP00000013251/1-665 KGRWPQLWET PTLLWETPLL GLDTAQGLEL LSLLGTLLAL GALLLHQLRH bmy_14616T0/1-705 KGRWPQLWET PTLLWETPLL GLDTAQGLEL LSLLGTLLAL GALLLHQLRH BACU013514/1-711 KGRWPQLWET PTLLWETPLL GLDTAQGLEL LSLLGTLLAL GALLLHQLRH 101 150 ENSBTAP00000050413/1-727 PLVYLLLWAA YLSVCQVGQV FLYFQ----- WDSKKLETGF LAMLVAPLGL ENSP00000424381/1-707 PVIYLLLWAA YLSACQVGQV FLYFQ----- WDSLLLETGF LAVLVAPLRP ENSTTRP00000013251/1-665 LLVYLLLWAA YLSAYQVGQV FLYFQ----- WDSLLLETGF LALLVAALRL bmy_14616T0/1-705 FLVYLLLWAA YLSAYQANTH PLFPDSPSPC RDSLLLETGF LALLVAPLRL BACU013514/1-711 FLVYLLLWAA YLSAYQANTH PLFPDSPSPC RDSLLLETGF LALLVAPLRL 151 200 ENSBTAP00000050413/1-727 PPNHKQAPQG RPGGVSPHEG LPFWLVRWLL FRLMFASGVV KLTSRCPAWW ENSP00000424381/1-707 ASHRKEAPQG RQAGALPHED LPFWLVRWLL FRLMFASGVV KLTSRCPAWW ENSTTRP00000013251/1-665 PPRHKQA-QG RLAGVPPHED LPFWLVRWLL FRLMFASGVV KLTSRCPAWW bmy_14616T0/1-705 PPRHKHA-QG RLAGVLPHED LPFWLVRWLL FRLMFASGVV KLTSRCPAWW BACU013514/1-711 PPRHKHA-QG RLAGVLPHED LPFWLVRWLL FRLMFASGVV KLTSRCPAWW 201 250 ENSBTAP00000050413/1-727 GLTALTYHYE TQCLPTPAAW FAHHLPVWLH KLSVVATFLI EIAVPPLFFA ENSP00000424381/1-707 GLTALTYHYE TQCLPTPAAW FAHHLPVWLH KLSVVATFLI EIAVPPLFFA ENSTTRP00000013251/1-665 GLTALTYHFE TQCLPTPASW FAHHLPVWLH KLGVVATFLI EIAVPPLFFA bmy_14616T0/1-705 GLTALTYHFE TQCLPTPASW FAHHLPIWLH KLSVVATFLI EIAVPPLFFA BACU013514/1-711 GLTALTYHFE TQCLPTPASW FAHHLPVWLH KLSVVATFLI EIAVPPLFFA 251 300 ENSBTAP00000050413/1-727 PVRRLRLAAF YSQVLLQVLI ILTGNYNFFN LLTLVLTTAL LDDTHLAAKS ENSP00000424381/1-707 PIRRLRLAAF YSQVLLQVLI IITGNYNFFN LMTLVLTTAL LDDQHLAAEP ENSTTRP00000013251/1-665 PVRRLRLAAF YSQVLLQVLI IVTGNYNFFN LLTLVLTTAL LDDAHLAAAS bmy_14616T0/1-705 PVRRLRLAAF YSQVLLQVLI IITGNYNFFN LLTLVLTTAL LDDAHLAAES BACU013514/1-711 PVRRLRLAAF YSQVLLQVLI IITGNYNFFN LLTLVLTTAL LDDAHLV--- 301 350 ENSBTAP00000050413/1-727 STSRRKRMPS SWPKALLAML TLLLELAVYG LLACGMVHYF GLEVDWEQHV ENSP00000424381/1-707 GHGSRKKTAT SWPKALLATL SLLLELAVYG LLAYGTVHYF GLEVDWQQRT ENSTTRP00000013251/1-665 GNSRRKKTPT SWPKALLA-- -LLLELAVYG LLACGVVHCF GLEVDWKQRT bmy_14616T0/1-705 GNSRRKKTPS SWPKALLALL ALLLELAVYG LLASGVVYCF GLEVDWEQHS BACU013514/1-711 GNSRRKKTPS SWPKALLALL ALLLELAVYG LLASGVVYCF GLEVDWEQHS 351 400 ENSBTAP00000050413/1-727 VRSRTMFTFH QLSQWLKTVT LPTMWLGAAS LAWELLTALW RWVQVRGSLR ENSP00000424381/1-707 IHSRTTFTFH QFSQWLKTLT LPTVWLGVAS LVWELLSALW RWTQVRGWLR ENSTTRP00000013251/1-665 VHSKTTFTFH QFSQWLKMVT LPTMWLGAAS LAWELLTALW RWTQVRGWLQ bmy_14616T0/1-705 VHSKTTFTFH QFSQWLKMVT LPTMWLGAAS LAWELLTALW RWTQVRGWLQ BACU013514/1-711 VHSKTTFTFH QFSQWLKMVT LPTMWLGAAS LAWELLTALW RWTQVRGWLQ 401 450 ENSBTAP00000050413/1-727 KLCAAVQLSV FGTATVALFL ISLVPYSYME PSSHGRLWTG AHRLFSTVEH ENSP00000424381/1-707 KLSAVVQLSL VGTATVALFL ISLVPYSYVE PGTHGRLWTG AHRLFGAVEH ENSTTRP00000013251/1-665 KFCAAVQLSI FGTATVALFT ISLVPYSYME PSTHGRLWTG AHRLFGTVEH bmy_14616T0/1-705 KFCAAVQLSV FGTATVALFT ISLVPYSYME PSTHGRLWTG AHRLFGTVEH BACU013514/1-711 KFCAAVQLSV FGTATVALFT ISLVPYSYME PSTHGRLWTG AHRLFGTVEH 451 500 ENSBTAP00000050413/1-727 LQLANSYGLF RRMTGLGGRP EVVLEGSYDG HQWTEIEFMY KPGNLSRPPP ENSP00000424381/1-707 LQLANSYGLF RRMTGLGGRP EVVLEGSYDG HHWTEIEFMY KPGNLSRPPP ENSTTRP00000013251/1-665 LQLAHSYGLF RRMTGLGGRP EVVLEGSYDG HHWTEIEFMY KPGNVSRAPP bmy_14616T0/1-705 LQLAHSYGLF RRMTGLGGRP EVVLEGSYDG HHWTEIEFMY KPGNVSRAPP BACU013514/1-711 LQLAHSYGLF RRMTGLGGRP EVVLEGSYDG HHWTEIEFMY KPGNVSRAPP 501 550 ENSBTAP00000050413/1-727 IVVPHQPRLD WQMWFAALGP HTHSPWFTSL VLRLLQGKEP AATHIRAGPA ENSP00000424381/1-707 VVVPHQPRLD WQMWFAALGP HTHSPWFTSL VLRLLQGKEP VIRLVQSQVA ENSTTRP00000013251/1-665 IVVPHQPRLD WQMWFAALGP HTHSPWFTSL VLRLLQGKEP VIRLIQNHAP bmy_14616T0/1-705 IVAPHQPRLD WQMWFAALGP HTHSPWFTSL VLRLLQGKEP VIRLIQNHAA BACU013514/1-711 IVAPHQPRLD WQMWFAALGP HTHSPWFTSL VLRLLQGKEP VIRLIQNHTP 551 600 ENSBTAP00000050413/1-727 LQVLVLAPLG AGPMVATPVG GRILPIRVPG GPGAGHAAQA VW-----PSG ENSP00000424381/1-707 -----RYPFH KQPPTYVRAQ RYKYWFSQPG EQGQWWRRQ- -WVEEFFPSV ENSTTRP00000013251/1-665 -----RYPFH KQPPTYVRAQ RYKYWFSR-- ----WWRRQ- -WVEEFFPSV bmy_14616T0/1-705 -----RYPFH KQPPTYVRAQ RYKYRFSKPG EQGQWWRRQ- -WVEEFFPSV BACU013514/1-711 -----RYPFH KQPPTYVRAQ RYKYRFSKPG EQGQWWRRQ- -WVEEFFPSV 601 650 ENSBTAP00000050413/1-727 QKPAP----- -GRWLQQHPE PGSPLGTETA VSPG-----G PRPALGAPGG ENSP00000424381/1-707 SLGDPTLETL LRQFGLQEKS PPRTRSANST LAQALHWTRS QLSPLEAPAL ENSTTRP00000013251/1-665 SLGDPTLDTL LRQFGLQDKS PPRARSSSST LAQALRWMRK QLSALEAPAL bmy_14616T0/1-705 SLGDPTLDTL LGQFGLQDKS PPRARSSSST LAQALRWMRK QLSPLEAPAL BACU013514/1-711 SLGDPTLDML LGQFGLQDKS PPRARSSSST LAQALRWMRK QLSPLEAPAL 651 700 ENSBTAP00000050413/1-727 CGGHQGHAGP AGPAVPASDQ GGEAQASPPG GLGSCQQASF PSP--QHQQR ENSP00000424381/1-707 LWGLLMAVGA VRFVQAL--- ---------- -LAPCSLRSS PLAPVSGEKR ENSTTRP00000013251/1-665 LWGLLGTVGA IRVMQAL--- ---------- -LGP---QSS PRA--KEEKH bmy_14616T0/1-705 LWGLLGTVVA IRVMQAL--- ---------- -LGP---QSS PRA--KEEKH BACU013514/1-711 LWGLLGTVVA IRVMQAL--- ---------- -LGP---QSS PRA--KEEKH 701 750 ENSBTAP00000050413/1-727 LPDPPAEKVA VICQPHVLRG SGSRLPLALC HRRAQPPCLS QLPCRRRSGC ENSP00000424381/1-707 RPASQKDSGA ASEQATAAPN PCSSSSRT-- ---------- ---TRRKK-- ENSTTRP00000013251/1-665 RPAPPEDSVA ASKQASPAPD VSSGSQTP-- ---------- ----RRKK-- bmy_14616T0/1-705 RPAPSEDSVA ASKQASPAPD ISSGSQTP-- ---------- ----RRKK-- BACU013514/1-711 RPAPPEDSVA ASKQASPAPD -GSKLDAPDA SSCTERDEAD LLWERRKDGT 751 800 ENSBTAP00000050413/1-727 WPVGGASPSA SRASPHPHHV RSQDTL ENSP00000424381/1-707 ---------- ---------- ------ ENSTTRP00000013251/1-665 ---------- ---------- ------ bmy_14616T0/1-705 ---------- ---------- ------ BACU013514/1-711 EVISTAACPV IRIRERIKAV HA----