KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:00:16 2014 Check: 00 .. Name: bmy_10594T0/1-177 Len: 321 Check: 2389 Weight: 1.00 Name: ENSTTRP00000001009/1-211 Len: 321 Check: 5152 Weight: 1.00 Name: ENSP00000346955/1-274 Len: 321 Check: 8328 Weight: 1.00 Name: ENSBTAP00000050467/1-274 Len: 321 Check: 1192 Weight: 1.00 // 1 50 bmy_10594T0/1-177 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001009/1-211 ---------- ---------- ---------- ---------- ---------- ENSP00000346955/1-274 MDRPGFVAAL VAGGVAGVSV DLILFPLDTI KTRLQSPQGF SKAGGFHGIY ENSBTAP00000050467/1-274 MDRPGFTASL VAGGVAGVSV DLILFPLDTI KTRLQSPQGF YKAGGFYGVY 51 100 bmy_10594T0/1-177 ---------- ----MPYVGP VDSV-WILPR LVDSFLIGPV S--------- ENSTTRP00000001009/1-211 ---------- ---AAAFFIT YEYVKWFLHT DSSSYLM-PV KHMLAASAGE ENSP00000346955/1-274 AGVPSAAIGS FPNAAAFFIT YEYVKWFLHA DSSSYLT-PM KHMLAASAGE ENSBTAP00000050467/1-274 AGVPSTAIGS FPNAAAFFVT YEYVKWILHT DSSSYLM-PV THMLAASVGE 101 150 bmy_10594T0/1-177 --------PV GVLKSLGTLS EKEQSVG--- ---------- ---------- ENSTTRP00000001009/1-211 VVACLIRVPS EVVKQRAQVS ASSGTFHIFS NILCQEGIQG LYRGYKSTVL ENSP00000346955/1-274 VVACLIRVPS EVVKQRAQVS ASTRTFQIFS NILYEEGIQG LYRGYKSTVL ENSBTAP00000050467/1-274 VVACLIRVPS EVVKQRAQVS VSSGTFHIFS NILCQEGIQG LYRGYKSTVL 151 200 bmy_10594T0/1-177 ---------- ---------- ---------- ---------S CGFAAAVTTP ENSTTRP00000001009/1-211 REIPFSLVQF PLWESLKXXX XXXXXXXXXX XXXXXXXXXX XGFAAAVTTP ENSP00000346955/1-274 REIPFSLVQF PLWESLKALW SWRQDHVVDS WQSAVCGAFA GGFAAAVTTP ENSBTAP00000050467/1-274 REIPFSLVQF PLWESLKALW SWRQDRVVDS WQAAVCGAFA GGFAAAVTTP 201 250 bmy_10594T0/1-177 LDVAKTRIML AKAGSSPASG NVLSALHGVW RTRGLSGSLL CIIRKERGAQ ENSTTRP00000001009/1-211 LDVAKTRIML AKAGSSPASG NVLSALHGVW RTRGLSGLFA GVFPRMAAIS ENSP00000346955/1-274 LDVAKTRITL AKAGSSTADG NVLSVLHGVW RSQGLAGLFA GVFPRMAAIS ENSBTAP00000050467/1-274 LDVAKTRIML AKAGSSTASG NILSALHAVW RTQGLSGLFA GVFPRMAAIS 251 300 bmy_10594T0/1-177 VQFCSDDDME NASSVLQAGR DDVIGLVPRV QREKDVHSER CPAAHVVCER ENSTTRP00000001009/1-211 L--------- -GGFIFLGAY DQTRSFLLEL GRE------- ---------- ENSP00000346955/1-274 L--------- -GGFIFLGAY DRTHSLLLEV GRK------- ---------- ENSBTAP00000050467/1-274 L--------- -GGFIFLGVY DQTRSFLLEL GRE------- ---------- 301 350 bmy_10594T0/1-177 ETSRSPVTRW AQRASQQEGR H ENSTTRP00000001009/1-211 ----SP---- ---------- - ENSP00000346955/1-274 ----SP---- ---------- - ENSBTAP00000050467/1-274 ----SP---- ---------- -