KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:17 2014 Check: 00 .. Name: ENSBTAP00000050480/1-720 Len: 734 Check: 3671 Weight: 1.00 Name: ENSP00000379310/1-722 Len: 734 Check: 5053 Weight: 1.00 Name: ENSTTRP00000011951/1-701 Len: 734 Check: 5881 Weight: 1.00 Name: bmy_04180T0/1-374 Len: 734 Check: 932 Weight: 1.00 Name: BACU019972/1-638 Len: 734 Check: 9443 Weight: 1.00 // 1 50 ENSBTAP00000050480/1-720 MAPKAKKSGS KKKKITKADR LKQILEEEEK RQKEEEEARV KYEKEEMERL ENSP00000379310/1-722 MGPKAKKSGS KKKKVTKAER LKLLQEEEER RLKEEEEARL KYEKEEMERL ENSTTRP00000011951/1-701 MGPKAKKKXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04180T0/1-374 ---------- ---------- ---------- ---------- ---------- BACU019972/1-638 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000050480/1-720 EIQRIENEKL QKLEAK-DLE RRNEELEELY LLEACFPEAE KLKRDNRFLS ENSP00000379310/1-722 EIQRIEKEKW HRLEAK-DLE RRNEELEELY LLERCFPEAE KLKQETKLLS ENSTTRP00000011951/1-701 XXXXXXXXXX XXXXXXXDLE RRNGELEELY LLEACFPEAE KLKRDSRLLS bmy_04180T0/1-374 ---------- ---------- ---------- ---------- ---------- BACU019972/1-638 ---------- -------DLE RRNEELEELY LLEACFPEAE KLKRDSRLLS 101 150 ENSBTAP00000050480/1-720 QWKHYIECDG SPDPSIAQEI NTFITLWKEE TNETLEEVIE KSKLVLNLIE ENSP00000379310/1-722 QWKHYIQCDG SPDPSVAQEM NTFISLWKEK TNETFEEVIE KSKVVLNLIE ENSTTRP00000011951/1-701 QWKHYIQCDG SPDPSISQEI NTFISLWKEE TNETFEAVTA KSKLVLNLIE bmy_04180T0/1-374 ---------- ---------- ---------- ---------- ---------- BACU019972/1-638 QWKHYIQCDG SPDPSISQEI NTFISLWKEE TNETFEAVTA KSKLVLNLIE 151 200 ENSBTAP00000050480/1-720 KLKLILLETP PYDLQGKNII QYQESILELQ ELLHLKFNRA TEILLRQAST ENSP00000379310/1-722 KLKFILLETP PCDLQDKNII QYQESILQLQ ELLHLKFGVA TEILLKQAST ENSTTRP00000011951/1-701 KLKLILLETP SYDLQEKNII QYQGSILELQ ELLHLKFNIA TEILLRQAST bmy_04180T0/1-374 ---------- ---------- ---------- ---------- ---------- BACU019972/1-638 KLKLILLETP SYDLQEKNII QYQGSILELQ ELLHLKFNIA TEILLRQAST 201 250 ENSBTAP00000050480/1-720 LADLDSGNME KVIQDENVTL YIWANLKKNP RHRSIRFSET QTGFEIPRIL ENSP00000379310/1-722 LADLDSGNME KVIKDENVTL YVWANLKKNP RHRSVRFSET QIGFEIPRIL ENSTTRP00000011951/1-701 LADLDSGNME KVIRDENVTV YVWANLKKNP RYRSIRFSET QTGFEIPRIL bmy_04180T0/1-374 ---------- ---------- ---------- ---------- ---------- BACU019972/1-638 LADLDSGNME KVIRDENVTL YVWANLKKNP RYRSIRFSET QIGFEIPRIL 251 300 ENSBTAP00000050480/1-720 ATSDIALRLL HTHYDHVTPL SPVLTPSQEH ISIVTDFVKE EVKSVQTAVS ENSP00000379310/1-722 ATSDIAVRLL HTHYDHVSAL HPVSTPSKEY TSAVTELVKD DVKNVEKAIS ENSTTRP00000011951/1-701 ATSDIALRLL HTRYDHVTPL GPVPTASQEH TSAVTYFGKD EVKSVEAAVS bmy_04180T0/1-374 ---------- ---------- ---------- ---------- ---------- BACU019972/1-638 ATSDIALRLL HTHYDHVTPL GPVPTAPQEH TSTVTYFGKD EVKSVEAAVS 301 350 ENSBTAP00000050480/1-720 KDLQEE-NKQ ENESNSVHEE ETKA-EGQGD VEEQMCPVQE EPEATKYEME ENSP00000379310/1-722 KEVEEESKQQ ERGSHLIQEE EIKVEEEQGD IEVKMSSAEE ESEAIKCERE ENSTTRP00000011951/1-701 KDLQEEYKEQ ENESNSVHEE ETKV-DEQGG IEGQTSSVQE ESEATKYELE bmy_04180T0/1-374 ---------- ---------- ---------- ---------- ---------- BACU019972/1-638 KDLQEEYNEQ ENESNVVHEE ETKV-DEQGG IEGQTSSVQE EPEATKYELE 351 400 ENSBTAP00000050480/1-720 MKLLSETVSA AQELLLENAS EKPYFLEENE VDLCQFTTLG GVYHLDILEL ENSP00000379310/1-722 MKVLSETVSA AQLLLVENSS EKPDFFEDNV VDLCQFTTLG GVYHLDILEL ENSTTRP00000011951/1-701 MKLLSETVSA AQLLLLENAS EKPYFFEENE VDLCQFTALG GVHHLDILEL bmy_04180T0/1-374 MKLLSETVSA AQLLLLENAP EKPYFSEENE VDLCQFTALG GVHHLDILEL BACU019972/1-638 MKLLSETVSA AQLLLLENAP EKPYFSEENE VDLCQFTALG GVHHLDILEL 401 450 ENSBTAP00000050480/1-720 PPQCKPMKGW MIVEILKEG- LQKYTYPPET TEDLEAENVF PPIEVTLEVH ENSP00000379310/1-722 PPQCKPVKGW MIVEILKEG- LQKYTYPPET TEEFETENAF PPIEVTLEVH ENSTTRP00000011951/1-701 PPQCKPRKGW MIVEXXXXX- XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04180T0/1-374 PPQCKPRKGW MIVEILKEG- LQKYTYPPET AEDFETENAF PPIEVMLEVH BACU019972/1-638 PPQCKPRKGW MIVEVVAGSH LESYG---SL LLGWNIEQVL ----TRLREH 451 500 ENSBTAP00000050480/1-720 ENV------I FFENPMVARW DA---EGKQW KTDGISNVSY KSEERLITFN ENSP00000379310/1-722 ENV------I FFEDPVVVRW DA---EGKHW RTDGISNVSY KPKERLVTFS ENSTTRP00000011951/1-701 XXX------X XXXXXXXXXX XX---XXKHW KTDGISNVSY KSEDRLITFS bmy_04180T0/1-374 ENV------I FFENPVVARW DA---EGKHW KTDGISNVSY KSEDRLITFS BACU019972/1-638 SHVSLVWTYV FIPLGYIPRN GIAGLNGKHW KTDGISNVSY KSEDRLITFS 501 550 ENSBTAP00000050480/1-720 LETFCPVTLI QDAHINMPYQ SWELRPLDVN KVLLTITTVF TELQIQIKEN ENSP00000379310/1-722 LDTFGPVTLI QDAHINMPYQ SWELRPLDVN KVLLTVTTVF TEIQIQIKEN ENSTTRP00000011951/1-701 LDTFGPVTLI QDAHVNMPYQ SWELRPLDVN KVLLTVTTVF TEIQIQIKXX bmy_04180T0/1-374 LETLGPVTLI QDAHVNMPYQ SWELRPLDVN KVLLTVTTVF TEIQIQIKEN BACU019972/1-638 LETLGPVTLI QDAHVNMPYQ SWELRPLDVN KVLLTVTTVF TEIQIQIKEN 551 600 ENSBTAP00000050480/1-720 LCMLASIKVN NKNHSSILEE KWMTPVSFII ALKKAGLNIF PTGHSHLYVV ENSP00000379310/1-722 LCMLSSIKLK DKKHISILEG TWMTPIPFII ALKEAGLNIF PTRHSHFYVI ENSTTRP00000011951/1-701 XXXXXXXXXX XXXXXXXXXX XXXTPVSFII AL-EAGLNIF PTGHSHFYVV bmy_04180T0/1-374 LCMLASIKLN NKKHSSILEE KWMTPVSFII ALKEAGLNIF PTGHSHFYVV BACU019972/1-638 LCMLASIKLN DKKHSSILEE KWMTPVSFII ALKEAGLNIF PTGHSHFYFV 601 650 ENSBTAP00000050480/1-720 INYKHPSVEV KAYRQMALLS SAFAFCWSKW NTACESKKTV FQVCQKYKTK ENSP00000379310/1-722 INNKVPLVEV KAYRQMALLS SAFAFGWSKW NLLCNSTKVV FKVREHL-TE ENSTTRP00000011951/1-701 INYKLPLVEV KAYRQMALLS SAFAFGWSKW NTVCNSDKVV FQVREQLPKE bmy_04180T0/1-374 INYKLPLVEV KAYRQMALLS SAFAFGWSKW NTVCDSKKVV FQVREHLPKE BACU019972/1-638 INYKLPLVEV KAYRQMALLS SAFAFGWSKW NTVCDSKKVL FQVREHLPKE 651 700 ENSBTAP00000050480/1-720 PCKGYDCYLL ICLYFDKLLK LRYKQ-FHAL KKMLKEETEF HSTLYHMVKD ENSP00000379310/1-722 ACTENPNWAL LMFSGDRAQR LKIKEESEAF SEALKEETEF HSTLYHMVKD ENSTTRP00000011951/1-701 EPIQNPNWTL LMFNGDRAQS LKINESSDAF SEALKEETEF HSTLYHMVKD bmy_04180T0/1-374 EPIQNPNWTL LMFSGDRAQS LKINESSDAF SEALKEETEF HSTLYHMVKD BACU019972/1-638 EPIQNPNWTL LMFSGDRAQS LKINESSDAF SEALKEETEF HSTLYHMVKD 701 750 ENSBTAP00000050480/1-720 FASQEAMRAV RRSNCQFVDS VCHMLLSTRL LSYS ENSP00000379310/1-722 FASEEAMEKV RSSNCQFVNS VCHMLLSTRL LSYS ENSTTRP00000011951/1-701 FASKEAMKKV RCS------- ---------- ---- bmy_04180T0/1-374 FASKEAMKKV RCSNCQFVDS VCHMLLSTRL LSYS BACU019972/1-638 FASKEAMKKV RCS------- ---------- ----