KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 4 Type: P Thu May 15 18:00:19 2014 Check: 00 ..
Name: ENSP00000334879/1-793 Len: 806 Check: 2460 Weight: 1.00
Name: ENSBTAP00000050514/1-777 Len: 806 Check: 8575 Weight: 1.00
Name: bmy_19246T0/1-787 Len: 806 Check: 8028 Weight: 1.00
Name: ENSTTRP00000014061/1-786 Len: 806 Check: 8797 Weight: 1.00
//
1 50
ENSP00000334879/1-793 MARELSQEAL LDFLCQAGGR VTNAALLSHF KSFLRDPDAS PSQHQHRREL
ENSBTAP00000050514/1-777 MARELSQEAL LDFLCQAGGR VTNAALLSHF KSFLRDPDAP PSQQQRRREL
bmy_19246T0/1-787 MARELSQEAL LDFLCQAGGR VTNGALLSHF KSFLRDPDTP PSQHQRRREL
ENSTTRP00000014061/1-786 MARELSQEAL LDFLCQAGGR VTNAALLSHF KSFLRDPDTP PSQHQRRREL
51 100
ENSP00000334879/1-793 FKGFVNSVAA VRQDPDGTKY VVLKRRYRDL LG-EEGLQRP REPPAAAPSA
ENSBTAP00000050514/1-777 FKGYVNSVAA VRQDPDGTKY VVLKRRYRDL VGEEEGLRRP RDPPAGAAPA
bmy_19246T0/1-787 FKGFVNSVAA VRQDPDGTKY VVLKKRYRDL LG-EEGLQRP SDPPAAAAPA
ENSTTRP00000014061/1-786 FKGFVNSVAA VRQDPDGTKY VVLKRRYRDL LG-EEGLQRP RDPPAAAAPA
101 150
ENSP00000334879/1-793 GGAAPCSPRG ARRGE-PPQQ QPRRRRREKE PEEEPAGAAA RAADAACNGL
ENSBTAP00000050514/1-777 GGAAPGSPLP ARRGEHPPQP QPGRRIRR-- -EEAPAGAAA PVADAGCNGL
bmy_19246T0/1-787 GGAAPSFPLL ARRGEPPPQQ QPRRRRREKE LEEEPAGAAD PAAEAGCDGL
ENSTTRP00000014061/1-786 GGAAPSFPLL ARSGEPPPQQ -PRRRRREKE LEEEQAGAAG PAAEAGCNGL
151 200
ENSP00000334879/1-793 PGSDSRRAPG KGGGSKGSPG QRPPVPAAA- AAGAQARASC AAAKTQGRCC
ENSBTAP00000050514/1-777 PAGGAREAAR GGGRPRGRSG HRAPVPAAAV AAAAQDRARC AAAETQGRCC
bmy_19246T0/1-787 LASGAR---- RGGRRRGSSG HRAPVPAAA- ----QDGARC AAAETQGRCC
ENSTTRP00000014061/1-786 PASGAREAAR RGGRRRGSSG HRAPVPAAA- ----QDGARC VAAETQGRRC
201 250
ENSP00000334879/1-793 WECLQNNLAV LPGE--LGAL PH----SATA EEKPARALPA QDDRGASRER
ENSBTAP00000050514/1-777 WECLQNGLGG ---------L PDPATASASA AEK-----LA QDDRGAPRPQ
bmy_19246T0/1-787 WECLQNGLGG LPGEPLLGSL PNPPTATASA WEKPAPAPPA QDDRGAPRPQ
ENSTTRP00000014061/1-786 WECLQNGLGG LPGESLLRSL PD----SASA WEKPAPAPPA QDDSGAPRPQ
251 300
ENSP00000334879/1-793 EEGALAEPAP VPAVAHSPPA TVEAATSRAS PPALLPGPAP RGDRPELLTP
ENSBTAP00000050514/1-777 WEGVLAEPPP GPATPRSPPA TVEA----AA PPAVLSSPSP AGDPPAPVTP
bmy_19246T0/1-787 REGAPAEPPP VSAAPRSPPT TVEAAGSGAS PPALLSCPTP PGEPPELVTP
ENSTTRP00000014061/1-786 REGAPAEPPP VCAAPRSPPT TVEAAGSGAS PPALLSCPTP PGEPPELVIS
301 350
ENSP00000334879/1-793 SSLHYSTLQQ QQQRTREWVA RHPQVPEARD QGPIRAWSVL PDNFLQLPLE
ENSBTAP00000050514/1-777 GSVHYSTLQQ QQQRTREWVA RHPQVPETRD HGPVRAWSVL PDDFPRLPSE
bmy_19246T0/1-787 SSLHYSTLKQ QQQRTREWVA RHPQIPKARD HGPIRAWSML PDNFPQLPSE
ENSTTRP00000014061/1-786 GSLHYSTLQK HQQRTREWVA RHPQIPEARN QGPIRAWSML PDNFLQLPSD
351 400
ENSP00000334879/1-793 PGSTEPNSE- -PPDPCLSSH SL-FPVVPDE SWESWAGNPS LTVFRSIRCQ
ENSBTAP00000050514/1-777 QGSWVQESES APAEPPPPSQ SLVFPTVS-- --EVWPGDSQ LAVFRSIRCQ
bmy_19246T0/1-787 PGFWVPESKP APPDLPPPPH SL-FPAVS-- --ESCPGKSP LAVFRSIRCQ
ENSTTRP00000014061/1-786 PGFWVPVSKP APPDLPPPPH SL-FPAVS-- --ESWLGESP LAVFRSIRCQ
401 450
ENSP00000334879/1-793 LSLQDLDDFV DQESDGSEES SSGPKDSPGA SEEGLQVVLG TPDRGKLRNP
ENSBTAP00000050514/1-777 LSLQDLEDFV EQESHGSEES SSGPKESPGG SEDGLRLALG APDGRRLRNP
bmy_19246T0/1-787 LSLQDLEDFV DQESHGSEES SSGPKESPGG SEEGLXLAPG GPDGRRLRNP
ENSTTRP00000014061/1-786 LSLQDLEDFV DQESHGSEES SSGPKESPGG SEEGLHLAPG APDGRRLRNP
451 500
ENSP00000334879/1-793 AGGLSVSRKE GSPSRSPQGL RNRGDGHISQ QVPAGANGLA GHPLKPLPWP
ENSBTAP00000050514/1-777 AG--AP-PKE ARPTRSPQGL RNVGDAHTSQ PVSTGADGPA GDP-QPLSWP
bmy_19246T0/1-787 AG--APSPKE GSPSRSLQGL RNREDGHPSQ PIPIGAGGLA GHP-QPLPWP
ENSTTRP00000014061/1-786 AG--APSPKE GCPSGSLQGL RNIEDGHPSQ PVPIGAGGLA GHP-QPLPWP
501 550
ENSP00000334879/1-793 VPKLRRSLRR SSLAGRAKLS SSDEEYLDEG LLKRSRRPPR SRKPSKAGTA
ENSBTAP00000050514/1-777 APKLRRSLRR NSRAGRAKLS SSDEECLQED LLKRSRRPPR SRKPSRVGAM
bmy_19246T0/1-787 VPKLRRSLRR SSRAERAQLS SSDEECLEGD LLKRSRRPPR SRRPSKVGAM
ENSTTRP00000014061/1-786 VPKLRRSLRW SSRAERAKLS SSDEECLEED LLKRSRRPPR SRKPSKVGAM
551 600
ENSP00000334879/1-793 PSPRVDAGLS LKLAEVK-AV VAERGWRHSL WVPSGEGSAA LAPHRTSEHK
ENSBTAP00000050514/1-777 SSPRVDAALT LAHADIKAAA AAERNHPHSW QVPGGDRLAA LVPHRSSEHK
bmy_19246T0/1-787 CSPRVDAALT PKPVDLK-AT VVECGHPHSS WAPGEERPAA LIPTRSSEHK
ENSTTRP00000014061/1-786 SSPRVDAALT PKPADIK-AT VVECGHPHSS WAPGGERPAA LIPPRSSEHK
601 650
ENSP00000334879/1-793 SSLVPLDARE HEWIVKLASG SWIQVWTLFW EDPQLALHKD FLTGYTALHW
ENSBTAP00000050514/1-777 SSLVPLDARE HEWIVKLASG SWIRVLSLFW EDPQLALHKD FLTGYTALHW
bmy_19246T0/1-787 SSLVPLDARE HEWIVKLASG SWIQVLTLFW EDPQLALHKD FLTGYTALHW
ENSTTRP00000014061/1-786 SSLVPLDARE HEWIVKLASG SWIQVLTLFW EDPQLALHKD FLTGYTALHW
651 700
ENSP00000334879/1-793 IAKHGDLRAL QDLVSGAKKA GIVLDVNVRS SCGYTPLHLA AIHGHQGVIK
ENSBTAP00000050514/1-777 IAKHGALRAL QDLASSAQKA GVALDVNVKS SCGYTPLHLA AIHGHQGIIK
bmy_19246T0/1-787 IAKHGDLRAL QELVSGAQKA GIALDINVKS SCGYTPLHLA AIHGHQGIIK
ENSTTRP00000014061/1-786 IAKHGDLRVL QDLVSGAQKA GIALDVNVKS SCGYTPLHLA AIHGHQGIIK
701 750
ENSP00000334879/1-793 LLVQRLASRV NVRDSSGKKP WQYLTSNTSG EIWQLLGAPR GKPIFPVYPL
ENSBTAP00000050514/1-777 LLVQRLASRV NIRDSSGKKP WQYLTSNTSG EIWQLLEAPR GKPIFPTYSL
bmy_19246T0/1-787 LLVQRLASRV NVRDSSGKKP WQYLTSNTSG EIWQLLEAPR GKPIFSTYPL
ENSTTRP00000014061/1-786 LLVQRLASRV NVRDSSGKKP WQYLTSNTSG EIWQLLEAPR GKPIFSTYPL
751 800
ENSP00000334879/1-793 VGSSSPTRKA KSKEISRSVT RKTSFAALLK SQHNKWKLAN QYEKFHSPRE
ENSBTAP00000050514/1-777 VRSSSPTRKV KSQEVSRHVT RKTSLAALLK SQHTKWKLAN QYEKCPNLRE
bmy_19246T0/1-787 VRSSSPTRKA KSREISRNVT RKTSFAALLK CQHSKWRSAN QYEKFPSLRE
ENSTTRP00000014061/1-786 VRSSSPTRKA KSREISRNVT RKTSFAALLK SQHSKWKSAN QYEKFPSLRE
801 850
ENSP00000334879/1-793 REEYSD
ENSBTAP00000050514/1-777 REEDSA
bmy_19246T0/1-787 REEYSD
ENSTTRP00000014061/1-786 REEYSD