KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:00:21 2014 Check: 00 .. Name: ENSP00000404074/1-445 Len: 445 Check: 7109 Weight: 1.00 Name: ENSBTAP00000050560/1-439 Len: 445 Check: 8294 Weight: 1.00 Name: bmy_11225T0/1-263 Len: 445 Check: 6816 Weight: 1.00 Name: ENSTTRP00000012520/1-393 Len: 445 Check: 8739 Weight: 1.00 // 1 50 ENSP00000404074/1-445 MNTNSKEVLS LGVQVPEAWE ELLTMKVEAK SHLQWQESRL KRSNPLAREI ENSBTAP00000050560/1-439 MNIDSKEILC LDMQAPKVWE ELLTEKVEAE SHPQKQESRL KRSNSLAREI bmy_11225T0/1-263 MNTDSKEVIS LHVQAPDVWE E-LTVKAEAE SHLQMQESGL KRNNPLAREI ENSTTRP00000012520/1-393 MNTDSKEVIS LDVEARDVWE E-LTVKAEAE SHLQMQESGL KRNNPLAREI 51 100 ENSP00000404074/1-445 FRRHFRQLCY QETPGPREAL TRLQELCYQW LRPHVSTKEQ ILDLLVLEQF ENSBTAP00000050560/1-439 SRRHFRQLCY QETPGPRQAL TRLRKLCYQC LRPHVSTKKQ ILDLLVLEQF bmy_11225T0/1-263 FRRRFRQLCY QETPGPREAL TRLRDLCYQW LRPHVSTKEQ ILDLLVLEQF ENSTTRP00000012520/1-393 FRRRFRQLCY QETPGPREAL TQLRDLCYQW LRPHVSTKEQ ILDLLVLEQF 101 150 ENSP00000404074/1-445 LSILPKELQG WVREHCPESG EEAVILLEDL ERELDEPQHE MVAHRHRQEV ENSBTAP00000050560/1-439 LSILPQELQG WMREHCPESG EEAVILLEDL ERELDEPQHE MVAYRQEQEV bmy_11225T0/1-263 LCILPKEVQG WVQEQCPESG EEAVILLEDL ERELDEPQHE MVAYRHRREV ENSTTRP00000012520/1-393 LCILPKEVQG WVQEHCPESG EEAVILLEDL ERELDEPQHE MVAYRHRREV 151 200 ENSP00000404074/1-445 LCKEMVPLAE QTPLTLQSQP KEPQLTCDSA QKCHSIGETD LIRSLRRRAV ENSBTAP00000050560/1-439 LSK------A HMSLALQSQP KEPQLTLVSA QEPHPIGETV LLRSLSKRAV bmy_11225T0/1-263 LSKETVSLGE QMSLGLQSQP KEPQLTYDPA QEPHRIGKT- ---------- ENSTTRP00000012520/1-393 LSKETVSLGE QMSLGLQSQP KEPQLTCDPA QEPHRIGKT- ---------- 201 250 ENSP00000404074/1-445 LIPLGAHLFS TDTFLFSKPV VIPQLKGGGE TWPNNRGVLR DEVTKTEDRE ENSBTAP00000050560/1-439 LVSLVAHFFS ADTFLFCKPV VISQLKGSGE PWSHPRGVLR GGMTQTEDRE bmy_11225T0/1-263 ---------- ---------- ---------- ---------- DGMTKTEDRE ENSTTRP00000012520/1-393 ---------- ---------- ---------- ---------- DGMTKTENRE 251 300 ENSP00000404074/1-445 LVLRKDCPKI VEPHGKMFNE QTWEVSQQDP SHGEVGEHKD RIERQWGNLL ENSBTAP00000050560/1-439 LVLRKHCPKR VEPCGKVSYG LTWEESQQGP QHGEVSEHKG GVERHWGSPV bmy_11225T0/1-263 LMLRKDCPKR VEPHGKMSYG QTWEISQQDP RHREVG---- ---------- ENSTTRP00000012520/1-393 LVLRKDCPKR VEPHGKMSYG QTWEISQQDP RHREVGDCKG GVERHWGNPL 301 350 ENSP00000404074/1-445 GEGQHKCDEC GKSFTQSSGL IRHQRIHTGE RPYECNECGK AFSRSSGLFN ENSBTAP00000050560/1-439 GTGPHRYEEC GKSFAQSSGL VRHQRVHTGE RPYECNECGK TFSRSSGLLN bmy_11225T0/1-263 ---------- ---------- ---------- ---------- -MTEIPVLFM ENSTTRP00000012520/1-393 GAGPHRCEEC GKSFAQSSGL VRHQRVHTGE RPYECNECGK TFSRSSGLFN 351 400 ENSP00000404074/1-445 HRGIHNIQKR YHCKECGKVF SQSAGLIQHQ RIHKGEKPYQ CSQCSKSYSR ENSBTAP00000050560/1-439 HRGIHNIQKR YHCKECGKAF SQSAGLIQHK RIHKGEKPYQ CSQCNKSYSQ bmy_11225T0/1-263 --GLWTTQAR ---------- ---------- RV----TAVT CTTADE---- ENSTTRP00000012520/1-393 HRGIHNIQKR YHCKECGKAF SQSAGLIQHQ RIHKGEKPYQ CSQCNKSYGR 401 450 ENSP00000404074/1-445 RSFLIEHQRS HTGERPHQCI ECGKSFNRHC NLIRHQKIHT VAELV ENSBTAP00000050560/1-439 HSFLIEHQRS HTGERPHHCN QCGKSFNHHC NLIRHQKIHL VAELA bmy_11225T0/1-263 ---------- ---------- ---------- ---------- ----- ENSTTRP00000012520/1-393 RSFLIEHQRS HTGERPHHCN KCGKSFNRHC NLIRHQKIHV VAELV