KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:25 2014 Check: 00 .. Name: BACU003165/1-488 Len: 497 Check: 7501 Weight: 1.00 Name: bmy_04371T0/1-414 Len: 497 Check: 5647 Weight: 1.00 Name: ENSP00000339063/1-462 Len: 497 Check: 5308 Weight: 1.00 Name: ENSTTRP00000000106/1-462 Len: 497 Check: 5336 Weight: 1.00 Name: ENSBTAP00000050667/1-443 Len: 497 Check: 1745 Weight: 1.00 // 1 50 BACU003165/1-488 MGKEKTHINI VVTGHVDSEK STTTGHLIYK RGGIDRRTIE KFEKEAAEMG bmy_04371T0/1-414 MGKEKTHINI VVIGHVDSGK STTPGHLIYK CGGMDKRTIE KLEKEATEMG ENSP00000339063/1-462 MGKEKTHINI VVIGHVDSGK STTTGHLIYK CGGIDKRTIE KFEKEAAEMG ENSTTRP00000000106/1-462 MGKEKTHINI VVIGHVDSGK STTTGHLIYK CGGIDKRTIE KFEKEAAEMG ENSBTAP00000050667/1-443 LGKEKTHINI VVIGHVDSGK STTTGHLIYK CGGIDKRTIE KFEKEAAEMG 51 100 BACU003165/1-488 KGSFKYAWVL DKLKAERERG ITTDISLWKF ESSKYYVTIT DAPGHRDFIK bmy_04371T0/1-414 KGSFKYPWVL DKLKAEHERG ITTDISLWKF KTSKYYVTTI DAPGHRDFIK ENSP00000339063/1-462 KGSFKYAWVL DKLKAERERG ITIDISLWKF ETSKYYVTII DAPGHRDFIK ENSTTRP00000000106/1-462 KGSFKYAWVL DKLKAERERG ITIDISLWKF ETSKYYVTII DAPGHRDFIK ENSBTAP00000050667/1-443 KGSFKYAWVL DKLKAEHERG ITIDISLWKF ETSKYYVIVT DAPGHRDFIK 101 150 BACU003165/1-488 NMITGTCQAD CAVLTVAAGV GESEAGISKN GQTRERALLA YTLGVKQLIV bmy_04371T0/1-414 NMITGTSQAD CAVLIVAAGI GEFEA----- ---------- ---------- ENSP00000339063/1-462 NMITGTSQAD CAVLIVAAGV GEFEAGISKN GQTREHALLA YTLGVKQLIV ENSTTRP00000000106/1-462 NMITGTSQAD CAVLIVAAGV GEFEAGISKN GQTREHALLA YTLGVKQLIV ENSBTAP00000050667/1-443 NMITGTSQAD CAVLIVAAGV GEFEAGISKN GQTREHALLA YTL------- 151 200 BACU003165/1-488 GVNKMDSTGP PYSRKRYEEI VKEVSTCIKK LGYNPDTLAF VPISGWTGDN bmy_04371T0/1-414 ---------- --AGRDTRKL LRKSAPPFRK LATTPAQQHL C--------Q ENSP00000339063/1-462 GVNKMDSTEP PYSQKRYEEI VKEVSTYIKK IGYNPDTVAF VPISGWNGDN ENSTTRP00000000106/1-462 GVNKMDSTEP PYSQKRYEEI VKEVSTYIKK IGYNPDTVAF VPISGWNGDN ENSBTAP00000050667/1-443 ---------- --ARRDNEEI VKEVSTYINK IGYNPDTVAF VPISGWNGDN 201 250 BACU003165/1-488 MLEPSANMPW FKGWKVT-RK DGNAS----- ---GTTLLEA LDCILLPTRP bmy_04371T0/1-414 LLAGMVTICW SQVLTCRGSR DGKSSVKMAM PVEPTTLLEA LDCILPPTRS ENSP00000339063/1-462 MLEPSANMPW FKGWKVT-RK DGNAS----- ---GTTLLEA LDCILPPTRP ENSTTRP00000000106/1-462 MLEPSANMPW FKGWKVT-RK DGNAS----- ---GTTLLEA LDCILPPTRP ENSBTAP00000050667/1-443 MLEPSANMSW FKGWKVT-HK DGNAS----- ---GTTLLEA LDCILPPTCP 251 300 BACU003165/1-488 TDKPLRLPLQ DVYKIGGIGT VPVGRVETGV LKPGMVVTFA PVNVTTEGKS bmy_04371T0/1-414 TDKPLRLPLQ DVYKIGGIGT VPVGRXETGV LKPGMVVTCA PVNVTTEVKS ENSP00000339063/1-462 TDKPLRLPLQ DVYKIGGIGT VPVGRVETGV LKPGMVVTFA PVNVTTEVKS ENSTTRP00000000106/1-462 TDKPLRLPLQ DVYKIGGIGT VPVGRVETGV LKPGMVVTFA PVNVTTEVKS ENSBTAP00000050667/1-443 TDKPLRLPLQ DVYKIGGIGT VPVGRVETGV LKPGMVVTFA PVNVTTEVKS 301 350 BACU003165/1-488 VEMHHEALSE ALPGDXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04371T0/1-414 VETHHEALSE ALPGDNVGFN VKNVSVKDVR RGNVAGESKN DPPMETAGFT ENSP00000339063/1-462 VEMHHEALSE ALPGDNVGFN VKNVSVKDVR RGNVAGDSKN DPPMEAAGFT ENSTTRP00000000106/1-462 VEMHHEALSE ALPGDNVGFN VKNVSVKDVR RGNVAGDSKN DPPMEAAGFT ENSBTAP00000050667/1-443 VEMHHEALSE ALPGDNVGFN VKNVSVKDVR RGNVAGDSKN DPPMEAAGFT 351 400 BACU003165/1-488 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04371T0/1-414 AQCWI----- ------CTCL DCHTAHVACK FAELK-KIDH CSGKKLEDGP ENSP00000339063/1-462 AQVIILNHPG QISAGYAPVL DCHTAHIACK FAELKEKIDR RSGKKLEDGP ENSTTRP00000000106/1-462 AQVIILNHPG QISAGYAPVL DCHTAHIACK FAELKEKIDR RSGKKLEDGP ENSBTAP00000050667/1-443 AQVIILNHPG QISAGYAPVL DCHTAHIACK FAELKEKIDR RSGKKLEDGP 401 450 BACU003165/1-488 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_04371T0/1-414 KFLKFGDAAI VDMASGKPMC AESFSDYPPL GHFAVHDMRH TVAVGVIKAV ENSP00000339063/1-462 KFLKSGDAAI VDMVPGKPMC VESFSDYPPL GRFAVRDMRQ TVAVGVIKAV ENSTTRP00000000106/1-462 KFLKSGDAAI VDMVPGKPMC VESFSDYPPL GRFAVRDMRQ TVAVGVIKAV ENSBTAP00000050667/1-443 KFLKSGDAAI VDMVPGKPMY VESFSDYPPL GRFAVRDMRQ TVAVGVIKAV 451 500 BACU003165/1-488 XXXXXXXXXX XXXXXXXXXX XXITMHRKTF RRKGECFVDR LFCVWQF bmy_04371T0/1-414 DKKAAGAGKV TKSAQKA--- ---------- -QKGK----- ------- ENSP00000339063/1-462 DKKAAGAGKV TKSAQKA--- ---------- -QKAK----- ------- ENSTTRP00000000106/1-462 DKKAAGAGKV TKSAQKA--- ---------- -QRAK----- ------- ENSBTAP00000050667/1-443 DKKAAGAGKV TKSAQKA--- ---------- -QKAK----- -------