KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 18:00:31 2014  Check: 00 ..

 Name: ENSP00000363643/1-365     Len:    365  Check:  3638  Weight:  1.00
 Name: ENSBTAP00000050738/1-365  Len:    365  Check:  5291  Weight:  1.00
 Name: bmy_08453T0/1-359         Len:    365  Check:  4530  Weight:  1.00
 Name: BACU011087/1-359          Len:    365  Check:  4293  Weight:  1.00

//


                          1                                                   50
ENSP00000363643/1-365     MASTESSLLR SLGLSPGPGS SEVELDCWFD EDFKFILLPV SYAVVFVLGL 
ENSBTAP00000050738/1-365  MAGTESLLFT TLGTHSDPDN SEMELDCQFN EEFKFILLPV TYAVVFLLGL 
bmy_08453T0/1-359         MTSTESSLFT ALGPHSDPDD SEVELDCRFN EEFKFILLPV SYAVVFVLGL 
BACU011087/1-359          MTSMESSLFT TLGPHSDPDD SEVELDCRFN EEFKFILLPV SYAVVFVLGL 


                          51                                                 100
ENSP00000363643/1-365     GLNAPTLWLF IFRLRPWDAT ATYMFHLALS DTLYVLSLPT LIYYYAAHNH 
ENSBTAP00000050738/1-365  GLNTLTIWLF LFRLRPWDAT ATYMFHLALS DTLYVLSLPT LVYYYAARNH 
bmy_08453T0/1-359         GLNALTIWLF LFRLRPWDAT TTYMFHLALS DTLYVLSLPT LVYYYAARNH 
BACU011087/1-359          GLNALTIWLF LFRLRPWDAT ATYMFHLALS DTLYVLSLPT LVYYYAARNH 


                          101                                                150
ENSP00000363643/1-365     WPFGTEICKF VRFLFYWNLY CSVLFLTCIS VHRYLGICHP LRALRWGRPR 
ENSBTAP00000050738/1-365  WPFGTGLCKF IRFLFYWNLY CSILFLTCIS VHRYLGICHP LRALRWGCPR 
bmy_08453T0/1-359         WPFGTGICKF ILFLFYWNLY CSVLFLTCIS VHRYLGICHP LRALRWVXPR 
BACU011087/1-359          WPFGTGFCKF IRFLFYWNLY CSVLFLTCIS VHRYLGICHP LRALRWVRPR 


                          151                                                200
ENSP00000363643/1-365     LAGLLCLAVW LVVAGCLVPN LFFVTTSNKG TTVLCHDTTR PEEFDHYVHF 
ENSBTAP00000050738/1-365  LAGLLCLAVW LVVAGCLVPN LFFVTTSPKG DTILCHDTTR PEEFDHYVHF 
bmy_08453T0/1-359         LAGLLCLAVW LVVAGCLVPN LFFVTTSPKG DIILCHDTTR PEEFDHYVHF 
BACU011087/1-359          LAGLLCLAVW LVVAGCLVPN LFFVTTSPKG DIILCHDTTR PEEFDHYVHF 


                          201                                                250
ENSP00000363643/1-365     SSAVMGLLFG VPCLVTLVCY GLMARRLYQP LPGSAQSSSR LRSLRTIAVV 
ENSBTAP00000050738/1-365  SSAIMGLLFG VPCLVTLVCY GLMAQRLYRP LPGATQSSSR LRSLHTIAVV 
bmy_08453T0/1-359         SSAIMGLLFG VPFLVTLVCY GLMARRLYRP LPGAAQSSSR LRSLCTIAVV 
BACU011087/1-359          SSAIMGLLFG VPFLVTLVCY GLMARRLYRP LPGAAQSSSR LRSLRTIAVV 


                          251                                                300
ENSP00000363643/1-365     LTVFAVCFVP FHITRTIYYL ARLLEADCRV LNIVNVVYKV TRPLASANSC 
ENSBTAP00000050738/1-365  LTVFAVCFVP FHITRTIYYM ARLLEADCRV LNIVNLVYKV TRPLASANSC 
bmy_08453T0/1-359         LTVFAVCFVP FHITRTVYYM ARLLEADCWV LNIVNMVYKV TRPLASANSC 
BACU011087/1-359          LTVFAVCFVP FHITRTVYYM ARLLEADCWV LNIVNVVYKV TRPLASANSC 


                          301                                                350
ENSP00000363643/1-365     LDPVLYLLTG DKYRRQLRQL CGGGKPQPRT AASSLALVSL PEDSSCRWAA 
ENSBTAP00000050738/1-365  LDPVLYLLTG EKYRRQLQQL CRGSRSRPPR ASSSLVLVSL PEDSRCRWTA 
bmy_08453T0/1-359         LDPVLYLVTG DKYRRQLRQL CRGGRPRLPT AASSLALVSL PEDSSCRWTA 
BACU011087/1-359          LDPVLYLFSG DKYRRQLRQL CRGGRPRLPT AASSLALVSL PEDSSCRWTA 


                          351                                                400
ENSP00000363643/1-365     TPQDSSCSTP RADRL 
ENSBTAP00000050738/1-365  APQDSGCPTP WADSL 
bmy_08453T0/1-359         TPQDGGLGR- ----- 
BACU011087/1-359          TPQDGGLGR- -----