KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:00:32 2014 Check: 00 .. Name: bmy_22195T0/1-514 Len: 831 Check: 2931 Weight: 1.00 Name: ENSBTAP00000050784/1-820 Len: 831 Check: 5320 Weight: 1.00 Name: ENSP00000318374/1-800 Len: 831 Check: 3024 Weight: 1.00 Name: ENSTTRP00000006247/1-795 Len: 831 Check: 9987 Weight: 1.00 // 1 50 bmy_22195T0/1-514 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000050784/1-820 MAANVGDQRS TDWSSQYSMV AGAGRENGME TPMHENPEWE KARQALASIS ENSP00000318374/1-800 MAANVGDQRS TDWSSQYSMV AGAGRENGME TPMHENPEWE KARQALASIS ENSTTRP00000006247/1-795 MAXXXXXXXX XXXSSQYSMV AGAGRESGME TPMHENPEWE KARQALASIS 51 100 bmy_22195T0/1-514 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000050784/1-820 KAGAAGSSAK ASSNGPVAGA QYVSQAEASA LQQQQYYQWY QQYNYTYPYS ENSP00000318374/1-800 KSGAAGGSAK SSSNGPVASA QYVSQAEASA LQQQQYYQWY QQYNYAYPYS ENSTTRP00000006247/1-795 KAGAAGSSAK ASSSGPVASA QYVSQAEASA LQQQQYYQWY QQYNYAYPYS 101 150 bmy_22195T0/1-514 ------MYQS YGSPSQYGMA SSYGSAAPQQ PSAPQHQGTL SQPPVPGMDE ENSBTAP00000050784/1-820 YYYPVSVYQS YGSPSQYGMA SSYGSA---- --APQHQGPL NQPPVPGMDE ENSP00000318374/1-800 YYYPMSMYQS YGSPSQYGMA GSYGSATPQQ PSAPQHQGTL NQPPVPGMDE ENSTTRP00000006247/1-795 YYYPVSMYQS YGSPSQYGMA SSYGSA-PQQ PSSAQHQGTL NQPPVPGMDE 151 200 bmy_22195T0/1-514 GLSYQAPPQQ LPAAQPPQPS NPPRGAHPLS SGPQPGTAPA TQHGQAGSAS ENSBTAP00000050784/1-820 GMPYQAPPQQ LPAAQPPQPA NPQHGTHPLS SGPQPGTAPA TQHSQAGPAS ENSP00000318374/1-800 SMSYQAPPQQ LPSAQPPQPS NPPHGAHTLN SGPQPGTAPA TQHSQAGPAT ENSTTRP00000006247/1-795 GLSYQAPPQQ LPAAQPPQPS NPPRGAHPLS SGPQPGTAPA TQHSQAGSAS 201 250 bmy_22195T0/1-514 GQAYGQHGYS EPAKPKKGQQ LWNRMKPAPG TGGLKFNIQK RPFAVTSQSF ENSBTAP00000050784/1-820 GQAYGQHTYP EPVKPKKGQQ LWNRMKPAPG TGGLKFNIQK RPFPVTNQNF ENSP00000318374/1-800 GQAYGPHTYT EPAKPKKGQQ LWNRMKPAPG TGGLKFNIQK RPFAVTTQSF ENSTTRP00000006247/1-795 GQAYGQHGYS EPAKPKKGQQ LWNRMKPAPG TGGLKFNIQK RPFAVTSQSF 251 300 bmy_22195T0/1-514 GSTTEGQHGS FGPQPNPEKA QNH-----RG SLSGKPDDWP QDMKEYVERC ENSBTAP00000050784/1-820 SSTTEGQHSG FGPQPNSEKV QNH-----RG NLSGKPDDWP QDMKEYVERC ENSP00000318374/1-800 GSNAEGQHSG FGPQPNPEKV QNHSGSSARG NLSGKPDDWP QDMKEYVERC ENSTTRP00000006247/1-795 GSTTEGQHGS FGPQPTPEKA QNH---SARG NLSGKPDDWP QDMKEYVERC 301 350 bmy_22195T0/1-514 FTACESEEDK DRTEKLLKEV LQARLQDGSA YTIDWSREPL PGLTREPVAE ENSBTAP00000050784/1-820 FTACESEEDK DRTEKLLKEV LQARLQDGSA YTIDWSREPL PGLTREPVAE ENSP00000318374/1-800 FTACESEEDK DRTEKLLKEV LQARLQDGSA YTIDWSREPL PGLTREPVAE ENSTTRP00000006247/1-795 FTACESEEDK DRTEKLLKEV LQARLQDGSA YTIDWSREPL PGLTREPVAE 351 400 bmy_22195T0/1-514 SPKKKRWEAP SSLHPPRGAG SATRGGGAQS QRGTPGAGGA GRARGSSFAK ENSBTAP00000050784/1-820 SPKKKRWEAP STLHPPRGAA SATRGGGAQS QRGTPGAGGA GRARGSSFAK ENSP00000318374/1-800 SPKKKRWEAA SSLHPPRGAG SATRGGGAPS QRGTPGAGGA GRARGNSFTK ENSTTRP00000006247/1-795 SPKKKRWEAP SSLHPPRGAG SATRGGGAQS QRGTPGAGGA GRARGSSFAK 401 450 bmy_22195T0/1-514 FGNRNVFMKD RSSSSSTDSR SRSSSRSPTR HFRRSDSHSD SDSSYSGNEC ENSBTAP00000050784/1-820 FGNRNVFMKD HSSSSSTDSR SRSSSRSPTR HFRRSDSHSD SESSCSGNEC ENSP00000318374/1-800 FGNRNVFMKD NSSSSSTDSR SRSSSRSPTR HFRRSDSHSD SDSSYSGNEC ENSTTRP00000006247/1-795 FGNRNVFMKD HSSSSSTDSR SRSSSRSPTR HFRRSDSHSD SDSSYSGNEC 451 500 bmy_22195T0/1-514 HPVGRRNPPP KGRGGRGAHV DRGRGRAQRG KRHDLAPTKR SRKKMAALEC ENSBTAP00000050784/1-820 HPVGRRNPPP KGRGGRGAHM DRGRGRAQRG KRHDLAPTKR SRKKMAALEC ENSP00000318374/1-800 HPVGRRNPPP KGRGGRGAHM DRGRGRAQRG KRHDLAPTKR SRKKMAALEC ENSTTRP00000006247/1-795 HPVGRRNPPP KGRGGRGAHM DRGRGRAQRG KRHDLAPTKR SRNKLASLDC 501 550 bmy_22195T0/1-514 EDPERELKKQ KRAARFQHGH SRRLRLEPLV LQMGSLESGG ADPDWHELQI ENSBTAP00000050784/1-820 EEPERELKKQ KRAARFQHGH SRRLRLEPLV LQVGSLEGGA ADPDWQELQI ENSP00000318374/1-800 EDPERELKKQ KRAARFQHGH SRRLRLEPLV LQMSSLESSG ADPDWQELQI ENSTTRP00000006247/1-795 EDXXXXXXXX XXXXXXXX-X XXRLRLEPLV LQMSSLDSGG ADPDWHELQI 551 600 bmy_22195T0/1-514 VGTCPDITKH YLRLTCAPDP STVRPVAVSA P--------W QR-------- ENSBTAP00000050784/1-820 VGTCLDVTKH YLRLTCAPDP STVRPVPVLK KSLCMVKSHW KEKQDYAFAC ENSP00000318374/1-800 VGTCPDITKH YLRLTCAPDP STVRPVAVLK KSLCMVKCHW KEKQDYAFAC ENSTTRP00000006247/1-795 VGTCPDVTKH YLRLTCAPDP STVRPVAVLK KSLCMVKSHW KEKQDYAFAC 601 650 bmy_22195T0/1-514 GQVLPVRPA- PAPGLRDQ-- ---------- ---------- -RC------- ENSBTAP00000050784/1-820 EQMKSIRQDL TVQGVRTEFT VEVYETHARI ALEKGDHEEF NQCQTQLKSL ENSP00000318374/1-800 EQMKSIRQDL TVQGIRTEFT VEVYETHARI ALEKGDHEEF NQCQTQLKSL ENSTTRP00000006247/1-795 EQMKSIRQDL TVQGVRTEFT VEVYETHARI ALEKGDHEEF NQCQTQLKSL 651 700 bmy_22195T0/1-514 --EDGRGNVG G--------- ---------- ---------- ---------- ENSBTAP00000050784/1-820 YAENLPGNVG EFTAYRILYY IFTKNSGDIT TELAYLTREL KADPCVAHAL ENSP00000318374/1-800 YAENLPGNVG EFTAYRILYY IFTKNSGDIT TELAYLTREL KADPCVAHAL ENSTTRP00000006247/1-795 YAENLPGNVG EFTAYRILYY IFTKNSGDIT TELAYLTREL KADPCVAHAL 701 750 bmy_22195T0/1-514 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000050784/1-820 ALRAAWALGN YHRFFRLYSH APCMSGYLVD KFADRERKAA LKAMIKTYVK ENSP00000318374/1-800 ALRTAWALGN YHRFFRLYCH APCMSGYLVD KFADRERKVA LKAMIKTF-- ENSTTRP00000006247/1-795 ALRAAWALGN YHRFFRLYSH APCMSGYLVD KFADRERKAA LKAMIKTF-- 751 800 bmy_22195T0/1-514 ---------- ---------- ---------- ---------- ---GGGAGR- ENSBTAP00000050784/1-820 LSSALALRPC APPWPRAPCL LPLPVCSALF WTRPLLHSHL SPPAALCSRQ ENSP00000318374/1-800 -------RPA ---------- --LPVS---- ----YLQAEL AFEGEAACRA ENSTTRP00000006247/1-795 -------RPA ---------- --LPVS---- ----YLQAEL AFEGEAACRA 801 850 bmy_22195T0/1-514 -----GLARG RP-------- ---------- - ENSBTAP00000050784/1-820 PGPPTSSSCP GPLPPRPPAS LTLLRPSPPR G ENSP00000318374/1-800 FLEPLGLAYT GPDNSSIDCR LSLAQLSAF- - ENSTTRP00000006247/1-795 FLEPLGLAYT GPDNSSVDCR LSLAQLPAF- -