KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 18:00:32 2014 Check: 00 ..
Name: ENSP00000378483/1-217 Len: 223 Check: 3388 Weight: 1.00
Name: ENSBTAP00000050801/1-223 Len: 223 Check: 4636 Weight: 1.00
Name: ENSTTRP00000005580/1-216 Len: 223 Check: 9176 Weight: 1.00
Name: bmy_14505T0/1-217 Len: 223 Check: 1450 Weight: 1.00
Name: BACU011226/1-187 Len: 223 Check: 9092 Weight: 1.00
//
1 50
ENSP00000378483/1-217 MPTPHEAEKQ ITGPEEADRP PSMSSHDTAS PAAPSRNPCC LCWCCCCSCS
ENSBTAP00000050801/1-223 MPTPPEAEKQ QTGPEEADQP PSMSSHDAAP PAPPRRNPCC LCWCCCCSCS
ENSTTRP00000005580/1-216 MPTPPEAEKQ HTGPEEGDQP PSMSSRDAAP PAPPRRNPCC LCWCCCCSCS
bmy_14505T0/1-217 MPTPPEAEKQ HTGPEEGDQP PSMSGPDAAP PAPPGRSPCC LCWCCCCSCS
BACU011226/1-187 ---------- ---------- --MSSPDAAP PAPPGRNPCC LCWCCCCSCS
51 100
ENSP00000378483/1-217 WNQERRRAWQ ASRESKLQPL PSCEVCA--- ---TPSPEEV QSWAQSFDKL
ENSBTAP00000050801/1-223 WNEERRRAWR ASRESRLQPL PSCEVCATPT PTPTPTPEEV RSWAQSFDKL
ENSTTRP00000005580/1-216 WN-ERRRAWR ASRESRLQPL PSCEACA--- ---TPSPEEV RSWAQSFDKL
bmy_14505T0/1-217 WNEERRRAWR ASRESRLQPL PSCEACA--- ---TPSPEEV RSWAQSFDKL
BACU011226/1-187 WNEERRRAWR ASRESRLQPL PSCEACA--- ---TPSPEEV RSWAQSFDKL
101 150
ENSP00000378483/1-217 MHSPAGRSVF RAFLRTEYSE ENMLFWLACE ELKAEANQHV VDEKARLIYE
ENSBTAP00000050801/1-223 MHSPAGRSVF REFLRTEYSE ENMLFWLACE ELKAEANQHV VDEKARLIYE
ENSTTRP00000005580/1-216 MHSPAGRSVF REFLRTEYSE ENMLFWLACE ELKAEANQHV VDEKARLIYE
bmy_14505T0/1-217 MHSPAGRGVF REFLRTEYSE ENMLFWLACE ELKAEANQHV VDEKARLIYE
BACU011226/1-187 MHSPAGRSVF REFLRTEYSE ENMLFWLACE ELKAEANQHV VDEKARLIYE
151 200
ENSP00000378483/1-217 DYVSILSPKE VSLDSRVREG INKKMQEPSA HTFDDAQLQI YTLMHRDSYP
ENSBTAP00000050801/1-223 DYVSILSPKE VSLDSRVREG INKKMQEPSA HTFDDAQLQI YTLMHRDSYP
ENSTTRP00000005580/1-216 DYVSILSPKE VSLDSRVREG VNKKMQEPSA HTFDDAQLQI YTLMHRDSYP
bmy_14505T0/1-217 DYVSILSPKE VSLDSRVREG INKKMQEPSA HTFDDAQLQI YTLMHRDSYP
BACU011226/1-187 DY-------- VSLDSRVREG INKKMQEPSA HTFDDAQLQI YTLMHRDSYP
201 250
ENSP00000378483/1-217 RFLSSPTYRA LLLQGPSQSS SEA
ENSBTAP00000050801/1-223 RFLSSPAYRA LLLQGASQSS SEA
ENSTTRP00000005580/1-216 RFLSSPAYRA LLLRGRSTSS SEA
bmy_14505T0/1-217 RFLSSPAYRA LLLRGRSTSS SEA
BACU011226/1-187 RFLSSPAYRA LLLRGRSTSS SEA