KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:00:39 2014 Check: 00 .. Name: BACU002139/1-190 Len: 783 Check: 6770 Weight: 1.00 Name: ENSP00000375783/1-629 Len: 783 Check: 1632 Weight: 1.00 Name: bmy_06588T0/1-662 Len: 783 Check: 2250 Weight: 1.00 Name: ENSBTAP00000051010/1-505 Len: 783 Check: 8683 Weight: 1.00 // 1 50 BACU002139/1-190 ---------- ---------- ---------- ---------- ---------- ENSP00000375783/1-629 -MIR------ ---------- ---------- ---------- ---------- bmy_06588T0/1-662 MQIRRWWAAQ WAGAYADETV TAGPAGGRAG GLLGRGGGTG RGVAAGPGRA ENSBTAP00000051010/1-505 -MIR------ ---------- ---------- ---------- ---------- 51 100 BACU002139/1-190 -------MTS GQG------- ---------- ---------- QTCFIVTRGG ENSP00000375783/1-629 --AFSFPVSP ERGRLRGWLE GSLAGLCELH WLRERQEYRV QQALRLAQPG bmy_06588T0/1-662 GAAFSFPVSP ERGRLRGWLE GSLAGLCELH WLRERQEYRV QQALRLAQPG ENSBTAP00000051010/1-505 --AFSFPVSP ERGRLRGWLE GSLAGLCELH WLRERQEYRV QQALRLAQPG 101 150 BACU002139/1-190 MARAQRE--- ---------- ---------- ---------- ---------- ENSP00000375783/1-629 MGGAEAEDEE DADEDEDAAA ARRAAAALEE Q--------- ---------- bmy_06588T0/1-662 MGGAEAEDEE DADEDEDAAA ARRAAAALEE RRAGSGLPAP KLGKGVALPR ENSBTAP00000051010/1-505 MGGAEAEDEE DADEDEDAAA ARRAAAALEE Q--------- ---------- 151 200 BACU002139/1-190 ---------- ---------- ---------- ---------- ---------- ENSP00000375783/1-629 ---------- ---------- ---------- ---------- ---------- bmy_06588T0/1-662 PDPQAHSLHP FPKENPSGHQ QGSKVDSIEI SHGDAELRQT MGASGWQWSK ENSBTAP00000051010/1-505 ---------- ---------- ---------- ---------- ---------- 201 250 BACU002139/1-190 ---------- ---------- ---------- ----EALPGL IWDLGQQLGD ENSP00000375783/1-629 ---------- ---------- ---------- ---LEALPGL VWDLGQQLGD bmy_06588T0/1-662 GRRRMWSLLG AKEPVGVHRC STIPLRLDSQ KDFPEALPGL IWDLGQQLGD ENSBTAP00000051010/1-505 ---------- ---------- ---------- ---LEALPGL IWDLGQQLGD 251 300 BACU002139/1-190 LSLESGGLEQ ESGRSSGFYE DPSSTGGPDS PPSTFCGDSG FSGSGSYGRL ENSP00000375783/1-629 LSLESGGLEQ ESGRSSGFYE DPSSTGGPDS PPSTFCGDSG FSGSSSYGRL bmy_06588T0/1-662 LSLESGGLEQ ESGRSSGFYE DPSSTGGPDS PPSTFCGDSG FSGSGSYGRL ENSBTAP00000051010/1-505 LSLESGGLEQ ESGRSSGFYE DPSSTGGPDS PPSTFCGDSG FSGSGSYGRL 301 350 BACU002139/1-190 GPSEPRGIYA SERPKSLAMS NNMA------ ---------- ---------- ENSP00000375783/1-629 GPSEPRGIYA SERPKSLGDA SPSAPEVVGA RAAVPRSFSA PYPTAGGSAG bmy_06588T0/1-662 GPSEPRGIYA SERPKSLGDA SPSAHEAVGA RAAVPRSFSA PYPTA---AV ENSBTAP00000051010/1-505 GPSEPRGIYA SERPKSLGDA SPSVPETVGA RAAVPRSFSA PYPTAAGSAG 351 400 BACU002139/1-190 ---------- ---------- ---------- ---------- ---------- ENSP00000375783/1-629 PEACSSAERR ARAGPFLTPS PLHAVAMRSP RPCGRPPTDS PDAGGAGRPL bmy_06588T0/1-662 PEACSSAERR ARAGPFLTPS PLHAVALRSP RP-------- ---------- ENSBTAP00000051010/1-505 PEACSSAERR ARAGPFLTPS PLHAVALRSP RPCCRPPQDS PDASGAGR-- 401 450 BACU002139/1-190 ---------- ---------- ---------- ---------- ---------- ENSP00000375783/1-629 DGYISALLRR RRRRGAGQPR TSPGGADGGP RRQNSVRQRP PDASPSPGSA bmy_06588T0/1-662 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051010/1-505 ---------- ---------- ---------- ---------- ---------- 451 500 BACU002139/1-190 ---------- ---------- ---------- ---------- ---------- ENSP00000375783/1-629 RPAREPSLER VGGHPTSPAA LSRAWASSWE SEAAPEPAAP PAAPSPPDSP bmy_06588T0/1-662 ---------- ---------- ---------- ---------- ---------P ENSBTAP00000051010/1-505 ---------- ---------- ---------- ---------- ---------P 501 550 BACU002139/1-190 ---------- ---------- ---------- ---------- ---------- ENSP00000375783/1-629 AEGRLVKAQY IPGAQAATRG LPGRAARRKP PPLTRGRSVE QSPPRERPRA bmy_06588T0/1-662 AEGRLVKAQY IPGAQAATRG LPGRAARRKA PPLTRGRSVE QSPPRERPRA ENSBTAP00000051010/1-505 LDGYI----- --SALLRRRR RRGAGQPRTS PGGADGGPRR QNSVRQRPPD 551 600 BACU002139/1-190 ---------- ---------- ---------- ---------- ---------- ENSP00000375783/1-629 AGRRGRMAEA SGRRGSPRAR KASRSQSETS LLGRASAVPS GPPKYPTAER bmy_06588T0/1-662 AGRRGRMTEA SGRRGSPRAR KAARSQSETS LLGRAAAVPP GPPKYPTAER ENSBTAP00000051010/1-505 AS-----PPP GGARSAPEPP ---------- -VERAGVRPA SPGPF---GR 601 650 BACU002139/1-190 ---------- ---------- ---------- ---KIAEARK ---------- ENSP00000375783/1-629 EEPRPPRPRR GPAPTLAAQA AGSCRRWRST AEIDAADGRR VRPRAPAARV bmy_06588T0/1-662 EEPRPPRPRR GPAPTLAAQA AGSCRRWRST AEIDAADGRR GRPRGPAARG ENSBTAP00000051010/1-505 AWASPWEAEX GPAPTLAAQA AGSCRRWRST AEIDAADGRR GRPRGPAARG 651 700 BACU002139/1-190 -------TVE QLKL------ ---EVNIDRM EMLGRGGEEG G--GSGAGQA ENSP00000375783/1-629 PGPGPSPSAP QRRLLYGCAG SDSECSAGRL GPLGRRGPAG GV-GGGYGES bmy_06588T0/1-662 PGPGPSPSAP QRRLLYGCAG SDSECSAGRL GPLGRRGPTG GI-GVGYGES ENSBTAP00000051010/1-505 PGPGPSPSAP QRRLLYGCAG SDSECSAGRL GPLGRRGPAS GVGGGGYGES 701 750 BACU002139/1-190 AA-----ELL AFCEAHAKDD ---------P LVTPVPAAEN --------PF ENSP00000375783/1-629 ESSASEGESP AFSSASSDSD GSGGLVWPQQ LVAATAASGG GAGAGA--PA bmy_06588T0/1-662 ESSASEGESP AFSSASSDSD GSGGLVWPQQ LVAATAASGP GAGAGGGAPA ENSBTAP00000051010/1-505 ESSASEGESP AFSSASSDSD GSGGLVWPQQ LVAATAASGP GAGAGGGAPA 751 800 BACU002139/1-190 RDKRLFCVLL ---------- ---------- --- ENSP00000375783/1-629 GPAKVFVKIK ASHALKKKIL RFRSGSLKVM TTV bmy_06588T0/1-662 GPAKVFVKIK ASHALKKKIL RFRSGSLKVM TTV ENSBTAP00000051010/1-505 GPAKVFVKIK ASHALKKKIL RFRSGSLKVM TTV