KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:42 2014 Check: 00 .. Name: ENSP00000403476/1-756 Len: 845 Check: 9285 Weight: 1.00 Name: ENSBTAP00000051039/1-676 Len: 845 Check: 4916 Weight: 1.00 Name: bmy_10794T0/1-447 Len: 845 Check: 9356 Weight: 1.00 Name: BACU009672/1-764 Len: 845 Check: 809 Weight: 1.00 Name: ENSTTRP00000011346/1-321 Len: 845 Check: 4876 Weight: 1.00 // 1 50 ENSP00000403476/1-756 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051039/1-676 ---------- ---------- ---------- ---------- ---------- bmy_10794T0/1-447 ---------- ---------- ---------- ---------- ---------- BACU009672/1-764 MFSETRRGPL GLKKGFLCSS SSLEGGPGRN MPPRESSNSF VRTEQPPRLP ENSTTRP00000011346/1-321 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000403476/1-756 ---------- ---------- ---------- --MEVLVLAG YRAQKEDELS ENSBTAP00000051039/1-676 ---------- ---------- ---------- --MEVLVLAG YRAQKEDELS bmy_10794T0/1-447 ---------- ---------- ---------- ---------- ---------- BACU009672/1-764 RTRPRAVATC CSRLRTRLHH PSCSAPEGAP EAMEALVLAG YSAQKEDELS ENSTTRP00000011346/1-321 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000403476/1-756 LAPGDVVRQV RWVPARGWLR GEFGGRYGLF PERLVQEIPE TLRGSGE-AR ENSBTAP00000051039/1-676 LAPGDVIRQV CKTPARGWMR GELGGRCGLF PESLVQEIPE TLRCSGEAAP bmy_10794T0/1-447 ---------- ------MLLP APIPGSDG-- --DMFQAILD TQRRQSE-AP BACU009672/1-764 LAPGDVVRQV CKGPARGWLR GELGGRCGLF PECLVQEIPE TFRGSGE-AP ENSTTRP00000011346/1-321 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000403476/1-756 RPRCARRRGH PAKHPRPQRW CKVNFSYSPE QADELKLQAG EIVEMIKEIE ENSBTAP00000051039/1-676 RPRCARRRGR SVKFLGPRRW CKANFNYTPE QADELQLQAG EIVEVIKEIE bmy_10794T0/1-447 FPKLQLQQQF PRWVSRPE-W QKASQN--PG FTATLCSQSG E--------- BACU009672/1-764 RPRCARRRG- ------PQRW CRVNFSYSPE QADELKLQAG EIVEVIKEIE ENSTTRP00000011346/1-321 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000403476/1-756 DGWWLGKKNG QLGAFPSNFV ELLDSGPPSL GNPDMPSVSP GPQRPPKLSS ENSBTAP00000051039/1-676 DGWWLGKKNG QLGAFPSNFV ELLDSGPPSL GNPDIPSVIL GPQRPPKLSS bmy_10794T0/1-447 -----RPKTG ESGD-PGQSL VLRGQGEP-- ---------- ---------- BACU009672/1-764 DGWWLGTKNG QLGAFPSNFV ELLDSGPPSL GNPDMPSISL GPQRPPKLSS ENSTTRP00000011346/1-321 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000403476/1-756 LAYDSPPDYL QTVSHPEVYR VLFDYQPEAP DELALRRGDV VKVLSKTTED ENSBTAP00000051039/1-676 LTYDSPPDYL QTVSYPETYR VLFDYHPEAP DELALRRGDE VKVLRKVTED bmy_10794T0/1-447 ---------- ---------- ---------- ---------- ---------- BACU009672/1-764 LNYDSPPDYL RTVSHPETYR VLFDYHPEAP DELALRRGDE VKVLRKTTED ENSTTRP00000011346/1-321 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000403476/1-756 KGWWEGECQG RRGVFPDNFV LPPPPIKKLV PRKVVSRESA PIKEPKKLMP ENSBTAP00000051039/1-676 KGWWEGESQG RRGLFPDNFV LPPPPIKKLV PRKVVSQESA PIKEPKKMVP bmy_10794T0/1-447 ----DSNCQG TQ---PSAET SPPSP----- ---------- ---------- BACU009672/1-764 KGWWEGESQG RRGLFPDNFV LPTPPIKKLV ARKVASRQSA PIKEPKKMMP ENSTTRP00000011346/1-321 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000403476/1-756 KTSLPTVKKL ATATTGPSKA KTSRTPSRDS QKLTSRDSGP NGGFQSGGSY ENSBTAP00000051039/1-676 KTVLPTAKKL VTAPTEPSKT KPSWTPSEDS QKRPSRNSSS NSSFQ----- bmy_10794T0/1-447 ---------- ---------- ---------- ---------- ---------- BACU009672/1-764 RTALPTVKKL VTAPTGPSKA KPSWTPSGDS QKRPSRNSSS SSSFLGGCPG ENSTTRP00000011346/1-321 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000403476/1-756 HPGRKRSKTQ TPQQRSVSSQ EEEHSSPVKA PSVKRTPMPD KTATPERPPA ENSBTAP00000051039/1-676 -PGRKRSKMQ ASQQRPAASQ DEKQSRLTKG PRVNKTPVLN KTSSPEKTPV bmy_10794T0/1-447 ---------- ---------Q GEEQSSLTKA PRVNKTPTLD KTPSP----- BACU009672/1-764 QSGRKRAKTQ ASQQRSAASW GEERSSLTKA PRVNKTPTLD KTPSLEKTPS ENSTTRP00000011346/1-321 ---------- ---------- ---------- -------TLD KTPSL----- 451 500 ENSP00000403476/1-756 PENAPSSKKI PAPDKVPSPE KTLTLGDKAS IPGNSTSGKI PAPDKVPTPE ENSBTAP00000051039/1-676 LDRAPKPEKT PPPDKTPSPE KTLSP-DKSP NP-----EKT PPSEKILTPE bmy_10794T0/1-447 -------EKT PSPDKAGSPE KTSSL-DSAR SP-----EKT LSPDKAPTPE BACU009672/1-764 PDKAPSPEKT PSPDKAGSPE KTSSL-DNAR SP-----EKT LSADKAPTPE ENSTTRP00000011346/1-321 -------EKT PSPDKGGSPE KTSSL-DNAR SP-----EKT LSPDKAPTPE 501 550 ENSP00000403476/1-756 KMVTPEDKAS IPENSIIPEE TLTVDKPSTP ERVFSVEESP ALEAPPMDKV ENSBTAP00000051039/1-676 ETLTPEKVPT LEETPTLE-- ----DKAPSP DRVLSVHEAQ VPEVLLEEEA bmy_10794T0/1-447 ESLTPDKVPI LEETPTLE-- ----DKAPRP DRVFSVHEAP VPEVP----- BACU009672/1-764 ESLTPDKVPI LEETPTLE-- ----DKAPRP DRVFSVHEAP VPEVP----- ENSTTRP00000011346/1-321 ECLTSDKVPI LEETSTLE-- ----DKAPRP DRVFSVHEVP VPEVP----- 551 600 ENSP00000403476/1-756 PNPKMAPLGD EAPTLEKVLT PE-LSEEEVS TRDDIQFHHF SSEE-ALQKV ENSBTAP00000051039/1-676 AGPKAAP-GD EAPTLGKVLT PE-------P VGANTQSHDF SPEEDAPPNA bmy_10794T0/1-447 PGPKMAPPGD EAHTLGKVLT TKQVLSEEAS TQDNTL---F SPEE-ALLNA BACU009672/1-764 PGPKMAPPGD EAHTLGKVLT TKQVLSEEAS TRDNTQFHHF SPEE-ALLNA ENSTTRP00000011346/1-321 PGPKMAPPGD EAHTLGKVLT PK--LSEEAS TRDNTQFHHF SPEE-ALLNA 601 650 ENSP00000403476/1-756 KYFVAKEDPS SQEEAHTPEA PPPQPPSSER CLGEMKCTLV RGDSSPRQAE ENSBTAP00000051039/1-676 RSLEASE-AQ SQEEVHMPEE PL-------- -LGMVKQPLE RRASSPLQSE bmy_10794T0/1-447 RSLEASE-AQ SQEEVHMPGE HP-------- -LCMAKRPLD KRDSSPLQSE BACU009672/1-764 RSLEASE-AQ SQKEVHMPGE HP-------- -LCMAKRPLD KRDSSPLQSE ENSTTRP00000011346/1-321 RSLGASG-AQ SQEEVHMPEE HP-------- -LCTVKRPLD KRDSSPLQSE 651 700 ENSP00000403476/1-756 L--KSGPASR PALEKPHPHE EATTLPEEAP SNDERTPEEE APPNEQRPLR ENSBTAP00000051039/1-676 S--NPKSGSA PALEKAHPQE EATTLLEEAP AKAEAAPKEE ESP------- bmy_10794T0/1-447 P--KSKSGST PALEKADPQE EATTLLEEAP AKDEATPKEE VPP------- BACU009672/1-764 PKSKSKSGSM PALEKAAPRE EATTLLEEAP AKDEATPKEE VPP------- ENSTTRP00000011346/1-321 S--ESKSGST PALEKAHLQE EATTLLEEAP AKDEATPKEE VSP------- 701 750 ENSP00000403476/1-756 EEVLPKEGVA SKEEVTLKEE LPPKEEVAPK EEVPPIERAF AQKTRPIKPP ENSBTAP00000051039/1-676 ---------- ---------- ----KEGVPS KEVT------ -----PAQKS bmy_10794T0/1-447 ---------- ---------- ----KEVSPA QKNP------ ----HPIMLT BACU009672/1-764 ---------- ---------- ----EEVSPA QKNP------ ----HPIVLT ENSTTRP00000011346/1-321 ---------- ---------- ----EEVSPA QKNP------ ----HPIVLT 751 800 ENSP00000403476/1-756 PDSQETLALP SLVPQNYTEN KNEGVDVTSL RGEVESLRRA LELMEVQLER ENSBTAP00000051039/1-676 AEFQTPPTLR SSAPPNLTDR RSDGDDMLRI KDQVEALRKS LEQMGVQLEK bmy_10794T0/1-447 PEPQMTPTLH SLVPQNLTDS KSDRDDMVRI KDEVEALRRS LELMGVQLEQ BACU009672/1-764 PEPQMTPTLH SLVPQNLTDS KSDRDDMVRI KDEVEALRRS LELMGVQLEK ENSTTRP00000011346/1-321 PEPQMTPTLH PSAPQNLTDS KSDRDDMMRI KDEVEALRRS LELMGVQLEK 801 850 ENSP00000403476/1-756 KLTDIWEELK SEKEQRRRLE VQVMQGTQKS QTPRVIHT-- QTQTY ENSBTAP00000051039/1-676 KLTDIWEELK SEKEKRLLLE VQMKQRDR-- ---GSIHA-- QTQTH bmy_10794T0/1-447 KLTDIWEELK SEREKRVLLE VQMTRRTQES RNLGSIHAQT QTQTH BACU009672/1-764 KLTDIWEELK SEREKRMLLE --MTRRTQES RNLGSIHA-- QTQTH ENSTTRP00000011346/1-321 KLTDIWEELK SEREKRVLLE VQMTRRTQES RNLGSIHA-- QTQTH