KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 18:00:44 2014 Check: 00 ..
Name: ENSTTRP00000003509/1-893 Len: 919 Check: 8176 Weight: 1.00
Name: bmy_07879T0/1-915 Len: 919 Check: 2726 Weight: 1.00
Name: BACU004117/1-623 Len: 919 Check: 2581 Weight: 1.00
Name: ENSP00000378284/1-847 Len: 919 Check: 2281 Weight: 1.00
Name: ENSBTAP00000051115/1-844 Len: 919 Check: 6494 Weight: 1.00
//
1 50
ENSTTRP00000003509/1-893 ---------- ---------- --MSKSFQQS SLGRDSQGHG RDLSAAGIGL
bmy_07879T0/1-915 MLGAQWRRNQ PSRAAETRDS STMSKSFQQS SLGRDSQGHG RDLSAAGIGL
BACU004117/1-623 ---------- ---------- ---------- ---------- ----------
ENSP00000378284/1-847 ---------- ---------- --MSKSFQQS SLSRDSQGHG RDLSAAGIGL
ENSBTAP00000051115/1-844 ---------- ---------- --MSKSFQQS SLGRDSQGHG RDLSAAGIGL
51 100
ENSTTRP00000003509/1-893 LAAATQSLSM PASLGRMNQG TARLASLMNL GMSSSLNQQG AHSALSSAST
bmy_07879T0/1-915 LAAATQSLSM PASLGRMNQG TARLASLMNL GMSSSLNQQG AHSALSSAST
BACU004117/1-623 ---------- ------MNQG TARLASLMNL GMSSSLNQQG AHSALSSAST
ENSP00000378284/1-847 LAAATQSLSM PASLGRMNQG TARLASLMNL GMSSSLNQQG AHSALSSAST
ENSBTAP00000051115/1-844 LAAATQSLSM PASLGRMNQG TARLASLMNL GMSSSLNQQG AHSALSSAST
101 150
ENSTTRP00000003509/1-893 SSHNLQSIFN IGSRGPLPLS SQHRGDADQA SNILASFGLS ARDLDELSRY
bmy_07879T0/1-915 SSHNLQSIFN IGSRGPLPLS SQHRGDADQA SNILASFGLS ARDLDELSRY
BACU004117/1-623 SSHNLQSIFN IGSRGPLPLS SQHRGDADQA SNILASFGLS ARDLDELSRY
ENSP00000378284/1-847 SSHNLQSIFN IGSRGPLPLS SQHRGDADQA SNILASFGLS ARDLDELSRY
ENSBTAP00000051115/1-844 SSHNLQSIFN IGSRGPLPLS SQHRGDADQA SNILASFGLS ARDLDELSRY
151 200
ENSTTRP00000003509/1-893 PEDKITPENL PQILLQLKRR RTEEGPTLSY GRDGRSATRE PPYRVPRDDW
bmy_07879T0/1-915 PEDKITPENL PQILLQLKRR RTEEGPTLSY GRDGRSATRE PPYRVPRDDW
BACU004117/1-623 PEDKITPENL PQILLQLKRR RTEEGPTLSY GRDGRSATRE PPYRVPRDDW
ENSP00000378284/1-847 PEDKITPENL PQILLQLKRR RTEEGPTLSY GRDGRSATRE PPYRVPRDDW
ENSBTAP00000051115/1-844 PEDKITPENL PQILLQLKRR RTEEGPTLSY GRDGRSATRE PPYRVPRDDW
201 250
ENSTTRP00000003509/1-893 EEKRHFRRDS FDDRGPSLNP VLDYDHGSRS QESGYYDRMD YEDDRLRDGE
bmy_07879T0/1-915 EEKRHFRRDS FDDRGPSLNP VLDYDHGSRS QESGYYDRMD YEDDRLRDGE
BACU004117/1-623 EEKRHFRRDS FDDRGPSLNP VLDYDHGSRS QESGYYDRMD YEDDRLRDGE
ENSP00000378284/1-847 EEKRHFRRDS FDDRGPSLNP VLDYDHGSRS QESGYYDRMD YEDDRLRDGE
ENSBTAP00000051115/1-844 EEKRHFRRDS FDDRGPSLNP VLDYDHGSRS QESGYYDRMD YEDDRLRDGE
251 300
ENSTTRP00000003509/1-893 RCRDDSFFGE TSHNYHKFDS EYERMGRGPG PLQERSLFEK KRGAPPSSNI
bmy_07879T0/1-915 RCRDDSFFGE TSHNYHKFDS EYERMGRGPG PLQERSLFEK KRGAPPSSNI
BACU004117/1-623 RCRDDSFFGE TSHNYHKFDS EYERMGRGPG PLQERSLFEK KRGAPPSSNI
ENSP00000378284/1-847 RCRDDSFFGE TSHNYHKFDS EYERMGRGPG PLQERSLFEK KRGAPPSSNI
ENSBTAP00000051115/1-844 RCRDDSFFGE TSHNYHKFDS EYERMGRGPG PLQERSLFEK KRGAPPSSNI
301 350
ENSTTRP00000003509/1-893 EDFHGLLPKG YPHLCSICDL PVHSNKEWSQ HINGASHSRR CQLLLEIYPE
bmy_07879T0/1-915 EDFHGLLPKG YPHLCSICDL PVHSNKSGDI ELIKNFYTFE NTYFISKFRP
BACU004117/1-623 EDFHGLLPKG YPHLCSICDL PVHSNK---- ---------- ----------
ENSP00000378284/1-847 EDFHGLLPKG YPHLCSICDL PVHSNKEWSQ HINGASHSRR CQLLLEIYPE
ENSBTAP00000051115/1-844 EDFHGLLPKG YPHLCSICDL PVHSNKEWSQ HINGASHSRR CQLLLEIYPE
351 400
ENSTTRP00000003509/1-893 WNPDNDTGHT MGDPFMLQQS TNPAPGILGP PPPS-HLGGP AVGPRGNLGA
bmy_07879T0/1-915 QKLICLLISR SGVNISMEQV TVVDASFFLK STQN----GI LTMIQDIQCA
BACU004117/1-623 ---------- ---------- ---------- ---------- ----------
ENSP00000378284/1-847 WNPDNDTGHT MGDPFMLQQS TNPAPGILGP PPPSFHLGGP AVGPRGNLGA
ENSBTAP00000051115/1-844 WNPDTDTGHT MGDPFMLQQS TNPAPGILGP PPPSFHLGGP AVGPRGNLGA
401 450
ENSTTRP00000003509/1-893 GNGNLQGPRH MQKGRVXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
bmy_07879T0/1-915 GNGNLQGPRH MQKGRVETSR VVHIMDFQRG KNLRYQLLQL VEPFGVISNH
BACU004117/1-623 ---------- ---------- ---------- ---------- ----------
ENSP00000378284/1-847 GNGNLQGPRH MQKGRVETSR VVHIMDFQRG KNLRYQLLQL VEPFGVISNH
ENSBTAP00000051115/1-844 GNGNLQGPRH MQKGRVETSR VVHIMDFQRG KNLRYQLLQL VEPFGVISNH
451 500
ENSTTRP00000003509/1-893 XXXXXXXXAF IEMATTEDAQ AAVDYYTTTP ALVFGKPVRV HLSQKYKRIK
bmy_07879T0/1-915 LILNKINEAF IEMATTEDAQ AAVDYYTTTP ALVFGKPVRV HLSQKYKRIK
BACU004117/1-623 ---------- ---------- ---------- ---------- ----------
ENSP00000378284/1-847 LILNKINEAF IEMATTEDAQ AAVDYYTTTP ALVFGKPVRV HLSQKYKRIK
ENSBTAP00000051115/1-844 LILNKINEAF IEMATTEDAQ AAVDYYTTTP ALVFGKPVRV HLSQKYKRIK
501 550
ENSTTRP00000003509/1-893 KPEGKPDQKF DQKQELGRVI HLSNLPHSGY SDSAVLKLAE PYGKIKNYIL
bmy_07879T0/1-915 KPEGKPDQKF DQKQELGRVI HLSNLPHSGY SDSAVLKLAE PYGKIKNYIL
BACU004117/1-623 ---------- ---------- ---------- ---------- ----------
ENSP00000378284/1-847 KPEGKPDQKF DQKQELGRVI HLSNLPHSGY SDSAVLKLAE PYGKIKNYIL
ENSBTAP00000051115/1-844 KPEGKPDQKF DQKQELGRVI HLSNLPHSGY SDSAVLKLAE PYGKIKNYIL
551 600
ENSTTRP00000003509/1-893 MRMKSQAFIE METREDAMAM VDHCLKKALW FQGRCVKVDL SEKYKKLVLR
bmy_07879T0/1-915 MRMKSQAFIE METREDAMAM VDHCLKKALW FQGRCVKVDL SEKYKKLVLR
BACU004117/1-623 ------AFIE METREDAMAM VDHCLKKALW FQGRCVKVDL SEKYKKLVLR
ENSP00000378284/1-847 MRMKSQAFIE METREDAMAM VDHCLKKALW FQGRCVKVDL SEKYKKLVLR
ENSBTAP00000051115/1-844 MRMKSQAFIE METREDAMAM VDHCLKKALW FQGRCVKVDL SEKYKKLVLR
601 650
ENSTTRP00000003509/1-893 IPNRGIDLLK KDKSRKRSYS PDGKESPSDK KSKTDGSQKT ESTTEGKEQE
bmy_07879T0/1-915 IPNRGIDLLK KDKSRKRSYS PDGKESPSDK KSKTDGSQKT ESTTEGKEQE
BACU004117/1-623 IPNRGIDLLK KDKSRKRSYS PDGKESPSDK KSKTDGSQKT ESTTEGKEQE
ENSP00000378284/1-847 IPNRGIDLLK KDKSRKRSYS PDGKESPSDK KSKTDGSQKT ESSTEGKEQE
ENSBTAP00000051115/1-844 IPNRGIDLLK KDKSRKRSYS PDGKESPSDK KSKTDGSQKT ESTAEGKEQE
651 700
ENSTTRP00000003509/1-893 EKSGEDGEKD TKDDQAEQEP NMLLESEDEL LVDEEEAAAL LESGSSVGDE
bmy_07879T0/1-915 EKSGEDGEKD TKDDQAEQEP NMLLESEDEL LVDEEEAAAL LESGSSVGDE
BACU004117/1-623 EKSGEDGEKD TKDDQAEQEP NMLLESEDEL LVDEEEAAAL LESGSSVGDE
ENSP00000378284/1-847 EKSGEDGEKD TKDDQTEQEP NMLLESEDEL LVDEEEAAAL LESGSSVGDE
ENSBTAP00000051115/1-844 EKSGEDGEKD TKDDQAEQEP NMLLESEDEL LVDEEEAAAL LESGSSVGDE
701 750
ENSTTRP00000003509/1-893 TDLANLGDVA SDGKKEPSDK VVKKDANASA SAAAKKKLKK RRFPGSMEGF
bmy_07879T0/1-915 TDLADLGDVA SDGKKEPSDK VVKKDANASA SATAKKKLKK RRFPGSMEGF
BACU004117/1-623 TDLANLGDVA SDGKKEPSDK VVKKDANASA SATAKKKLKK RRFPGSMEGF
ENSP00000378284/1-847 TDLANLGDVA SDGKKEPSDK AVKKD--GSA SAAAKKKLK- ----------
ENSBTAP00000051115/1-844 TDLANLGDVA SDGKKEPSDK AVKKDANASA SGAAKKKLKK RRFPGNMEGF
751 800
ENSTTRP00000003509/1-893 VTLDEVGDEE DSELQKLRKS GMAFKSGDKN DDGLVEIKVD KIEELDQENE
bmy_07879T0/1-915 VTLDEVGDEE DSELQKLRKS GMAFKSGDKN DDGLVEIKVD KIEELDQENE
BACU004117/1-623 VTLDEVGDEE DSELQKLRKS GMAFKSGDKN DDGLVEIKVD KIEELDQENE
ENSP00000378284/1-847 ---------- ---------- ---------- -------KVD KIEELDQENE
ENSBTAP00000051115/1-844 VTLDEVGDEE DSELQKLRKS GMAFKSGDKN DDGLVEIKVD KIEELDQENE
801 850
ENSTTRP00000003509/1-893 AALENGIKNE ENTEPGAESA ENADDPNKDT SENADGQSDE NKEDYTIPDE
bmy_07879T0/1-915 AALENGIKNE ENTEPGAESA ENADDPNKDT SENADGQSDE NKEDYTIPDE
BACU004117/1-623 AALENGIKNE ENTEPGAESA ENADDPNKDT SENADGQSDE NKEDYTIPDE
ENSP00000378284/1-847 AALENGIKNE ENTEPGAESS ENADDPNKDT SENADGQSDE NKDDYTIPDE
ENSBTAP00000051115/1-844 AALENGIKNE ENTEPGAESA ENADDPNKDT SENADGQSDE NKEDYTIPDE
851 900
ENSTTRP00000003509/1-893 YRIGPYQPNV PVGIDYVIPK TGFYCKLCSL FYTNEEVAKN THCSSLPHYQ
bmy_07879T0/1-915 YRIGPYQPNV PVGIDYVIPK TGFYCKLCSL FYTNEEVAKN THCSSLPHYQ
BACU004117/1-623 YRIGPYQPNV PVGIDYVIPK TGFYCKLCSL FYTNEEVAKN THCSSLPHYQ
ENSP00000378284/1-847 YRIGPYQPNV PVGIDYVIPK TGFYCKLCSL FYTNEEVAKN THCSSLPHYQ
ENSBTAP00000051115/1-844 YRIGPYQPNV PVEISE---- ---------- ---------- ----------
901 950
ENSTTRP00000003509/1-893 KLKDFL-KLA DDQQSRA--
bmy_07879T0/1-915 KLKKFLNKLA XERRQKKEA
BACU004117/1-623 KLKKFLNKLA EERRQKKEA
ENSP00000378284/1-847 KLKKFLNKLA EERRQKKET
ENSBTAP00000051115/1-844 ---------- ---------