KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:44 2014 Check: 00 .. Name: ENSTTRP00000003509/1-893 Len: 919 Check: 8176 Weight: 1.00 Name: bmy_07879T0/1-915 Len: 919 Check: 2726 Weight: 1.00 Name: BACU004117/1-623 Len: 919 Check: 2581 Weight: 1.00 Name: ENSP00000378284/1-847 Len: 919 Check: 2281 Weight: 1.00 Name: ENSBTAP00000051115/1-844 Len: 919 Check: 6494 Weight: 1.00 // 1 50 ENSTTRP00000003509/1-893 ---------- ---------- --MSKSFQQS SLGRDSQGHG RDLSAAGIGL bmy_07879T0/1-915 MLGAQWRRNQ PSRAAETRDS STMSKSFQQS SLGRDSQGHG RDLSAAGIGL BACU004117/1-623 ---------- ---------- ---------- ---------- ---------- ENSP00000378284/1-847 ---------- ---------- --MSKSFQQS SLSRDSQGHG RDLSAAGIGL ENSBTAP00000051115/1-844 ---------- ---------- --MSKSFQQS SLGRDSQGHG RDLSAAGIGL 51 100 ENSTTRP00000003509/1-893 LAAATQSLSM PASLGRMNQG TARLASLMNL GMSSSLNQQG AHSALSSAST bmy_07879T0/1-915 LAAATQSLSM PASLGRMNQG TARLASLMNL GMSSSLNQQG AHSALSSAST BACU004117/1-623 ---------- ------MNQG TARLASLMNL GMSSSLNQQG AHSALSSAST ENSP00000378284/1-847 LAAATQSLSM PASLGRMNQG TARLASLMNL GMSSSLNQQG AHSALSSAST ENSBTAP00000051115/1-844 LAAATQSLSM PASLGRMNQG TARLASLMNL GMSSSLNQQG AHSALSSAST 101 150 ENSTTRP00000003509/1-893 SSHNLQSIFN IGSRGPLPLS SQHRGDADQA SNILASFGLS ARDLDELSRY bmy_07879T0/1-915 SSHNLQSIFN IGSRGPLPLS SQHRGDADQA SNILASFGLS ARDLDELSRY BACU004117/1-623 SSHNLQSIFN IGSRGPLPLS SQHRGDADQA SNILASFGLS ARDLDELSRY ENSP00000378284/1-847 SSHNLQSIFN IGSRGPLPLS SQHRGDADQA SNILASFGLS ARDLDELSRY ENSBTAP00000051115/1-844 SSHNLQSIFN IGSRGPLPLS SQHRGDADQA SNILASFGLS ARDLDELSRY 151 200 ENSTTRP00000003509/1-893 PEDKITPENL PQILLQLKRR RTEEGPTLSY GRDGRSATRE PPYRVPRDDW bmy_07879T0/1-915 PEDKITPENL PQILLQLKRR RTEEGPTLSY GRDGRSATRE PPYRVPRDDW BACU004117/1-623 PEDKITPENL PQILLQLKRR RTEEGPTLSY GRDGRSATRE PPYRVPRDDW ENSP00000378284/1-847 PEDKITPENL PQILLQLKRR RTEEGPTLSY GRDGRSATRE PPYRVPRDDW ENSBTAP00000051115/1-844 PEDKITPENL PQILLQLKRR RTEEGPTLSY GRDGRSATRE PPYRVPRDDW 201 250 ENSTTRP00000003509/1-893 EEKRHFRRDS FDDRGPSLNP VLDYDHGSRS QESGYYDRMD YEDDRLRDGE bmy_07879T0/1-915 EEKRHFRRDS FDDRGPSLNP VLDYDHGSRS QESGYYDRMD YEDDRLRDGE BACU004117/1-623 EEKRHFRRDS FDDRGPSLNP VLDYDHGSRS QESGYYDRMD YEDDRLRDGE ENSP00000378284/1-847 EEKRHFRRDS FDDRGPSLNP VLDYDHGSRS QESGYYDRMD YEDDRLRDGE ENSBTAP00000051115/1-844 EEKRHFRRDS FDDRGPSLNP VLDYDHGSRS QESGYYDRMD YEDDRLRDGE 251 300 ENSTTRP00000003509/1-893 RCRDDSFFGE TSHNYHKFDS EYERMGRGPG PLQERSLFEK KRGAPPSSNI bmy_07879T0/1-915 RCRDDSFFGE TSHNYHKFDS EYERMGRGPG PLQERSLFEK KRGAPPSSNI BACU004117/1-623 RCRDDSFFGE TSHNYHKFDS EYERMGRGPG PLQERSLFEK KRGAPPSSNI ENSP00000378284/1-847 RCRDDSFFGE TSHNYHKFDS EYERMGRGPG PLQERSLFEK KRGAPPSSNI ENSBTAP00000051115/1-844 RCRDDSFFGE TSHNYHKFDS EYERMGRGPG PLQERSLFEK KRGAPPSSNI 301 350 ENSTTRP00000003509/1-893 EDFHGLLPKG YPHLCSICDL PVHSNKEWSQ HINGASHSRR CQLLLEIYPE bmy_07879T0/1-915 EDFHGLLPKG YPHLCSICDL PVHSNKSGDI ELIKNFYTFE NTYFISKFRP BACU004117/1-623 EDFHGLLPKG YPHLCSICDL PVHSNK---- ---------- ---------- ENSP00000378284/1-847 EDFHGLLPKG YPHLCSICDL PVHSNKEWSQ HINGASHSRR CQLLLEIYPE ENSBTAP00000051115/1-844 EDFHGLLPKG YPHLCSICDL PVHSNKEWSQ HINGASHSRR CQLLLEIYPE 351 400 ENSTTRP00000003509/1-893 WNPDNDTGHT MGDPFMLQQS TNPAPGILGP PPPS-HLGGP AVGPRGNLGA bmy_07879T0/1-915 QKLICLLISR SGVNISMEQV TVVDASFFLK STQN----GI LTMIQDIQCA BACU004117/1-623 ---------- ---------- ---------- ---------- ---------- ENSP00000378284/1-847 WNPDNDTGHT MGDPFMLQQS TNPAPGILGP PPPSFHLGGP AVGPRGNLGA ENSBTAP00000051115/1-844 WNPDTDTGHT MGDPFMLQQS TNPAPGILGP PPPSFHLGGP AVGPRGNLGA 401 450 ENSTTRP00000003509/1-893 GNGNLQGPRH MQKGRVXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_07879T0/1-915 GNGNLQGPRH MQKGRVETSR VVHIMDFQRG KNLRYQLLQL VEPFGVISNH BACU004117/1-623 ---------- ---------- ---------- ---------- ---------- ENSP00000378284/1-847 GNGNLQGPRH MQKGRVETSR VVHIMDFQRG KNLRYQLLQL VEPFGVISNH ENSBTAP00000051115/1-844 GNGNLQGPRH MQKGRVETSR VVHIMDFQRG KNLRYQLLQL VEPFGVISNH 451 500 ENSTTRP00000003509/1-893 XXXXXXXXAF IEMATTEDAQ AAVDYYTTTP ALVFGKPVRV HLSQKYKRIK bmy_07879T0/1-915 LILNKINEAF IEMATTEDAQ AAVDYYTTTP ALVFGKPVRV HLSQKYKRIK BACU004117/1-623 ---------- ---------- ---------- ---------- ---------- ENSP00000378284/1-847 LILNKINEAF IEMATTEDAQ AAVDYYTTTP ALVFGKPVRV HLSQKYKRIK ENSBTAP00000051115/1-844 LILNKINEAF IEMATTEDAQ AAVDYYTTTP ALVFGKPVRV HLSQKYKRIK 501 550 ENSTTRP00000003509/1-893 KPEGKPDQKF DQKQELGRVI HLSNLPHSGY SDSAVLKLAE PYGKIKNYIL bmy_07879T0/1-915 KPEGKPDQKF DQKQELGRVI HLSNLPHSGY SDSAVLKLAE PYGKIKNYIL BACU004117/1-623 ---------- ---------- ---------- ---------- ---------- ENSP00000378284/1-847 KPEGKPDQKF DQKQELGRVI HLSNLPHSGY SDSAVLKLAE PYGKIKNYIL ENSBTAP00000051115/1-844 KPEGKPDQKF DQKQELGRVI HLSNLPHSGY SDSAVLKLAE PYGKIKNYIL 551 600 ENSTTRP00000003509/1-893 MRMKSQAFIE METREDAMAM VDHCLKKALW FQGRCVKVDL SEKYKKLVLR bmy_07879T0/1-915 MRMKSQAFIE METREDAMAM VDHCLKKALW FQGRCVKVDL SEKYKKLVLR BACU004117/1-623 ------AFIE METREDAMAM VDHCLKKALW FQGRCVKVDL SEKYKKLVLR ENSP00000378284/1-847 MRMKSQAFIE METREDAMAM VDHCLKKALW FQGRCVKVDL SEKYKKLVLR ENSBTAP00000051115/1-844 MRMKSQAFIE METREDAMAM VDHCLKKALW FQGRCVKVDL SEKYKKLVLR 601 650 ENSTTRP00000003509/1-893 IPNRGIDLLK KDKSRKRSYS PDGKESPSDK KSKTDGSQKT ESTTEGKEQE bmy_07879T0/1-915 IPNRGIDLLK KDKSRKRSYS PDGKESPSDK KSKTDGSQKT ESTTEGKEQE BACU004117/1-623 IPNRGIDLLK KDKSRKRSYS PDGKESPSDK KSKTDGSQKT ESTTEGKEQE ENSP00000378284/1-847 IPNRGIDLLK KDKSRKRSYS PDGKESPSDK KSKTDGSQKT ESSTEGKEQE ENSBTAP00000051115/1-844 IPNRGIDLLK KDKSRKRSYS PDGKESPSDK KSKTDGSQKT ESTAEGKEQE 651 700 ENSTTRP00000003509/1-893 EKSGEDGEKD TKDDQAEQEP NMLLESEDEL LVDEEEAAAL LESGSSVGDE bmy_07879T0/1-915 EKSGEDGEKD TKDDQAEQEP NMLLESEDEL LVDEEEAAAL LESGSSVGDE BACU004117/1-623 EKSGEDGEKD TKDDQAEQEP NMLLESEDEL LVDEEEAAAL LESGSSVGDE ENSP00000378284/1-847 EKSGEDGEKD TKDDQTEQEP NMLLESEDEL LVDEEEAAAL LESGSSVGDE ENSBTAP00000051115/1-844 EKSGEDGEKD TKDDQAEQEP NMLLESEDEL LVDEEEAAAL LESGSSVGDE 701 750 ENSTTRP00000003509/1-893 TDLANLGDVA SDGKKEPSDK VVKKDANASA SAAAKKKLKK RRFPGSMEGF bmy_07879T0/1-915 TDLADLGDVA SDGKKEPSDK VVKKDANASA SATAKKKLKK RRFPGSMEGF BACU004117/1-623 TDLANLGDVA SDGKKEPSDK VVKKDANASA SATAKKKLKK RRFPGSMEGF ENSP00000378284/1-847 TDLANLGDVA SDGKKEPSDK AVKKD--GSA SAAAKKKLK- ---------- ENSBTAP00000051115/1-844 TDLANLGDVA SDGKKEPSDK AVKKDANASA SGAAKKKLKK RRFPGNMEGF 751 800 ENSTTRP00000003509/1-893 VTLDEVGDEE DSELQKLRKS GMAFKSGDKN DDGLVEIKVD KIEELDQENE bmy_07879T0/1-915 VTLDEVGDEE DSELQKLRKS GMAFKSGDKN DDGLVEIKVD KIEELDQENE BACU004117/1-623 VTLDEVGDEE DSELQKLRKS GMAFKSGDKN DDGLVEIKVD KIEELDQENE ENSP00000378284/1-847 ---------- ---------- ---------- -------KVD KIEELDQENE ENSBTAP00000051115/1-844 VTLDEVGDEE DSELQKLRKS GMAFKSGDKN DDGLVEIKVD KIEELDQENE 801 850 ENSTTRP00000003509/1-893 AALENGIKNE ENTEPGAESA ENADDPNKDT SENADGQSDE NKEDYTIPDE bmy_07879T0/1-915 AALENGIKNE ENTEPGAESA ENADDPNKDT SENADGQSDE NKEDYTIPDE BACU004117/1-623 AALENGIKNE ENTEPGAESA ENADDPNKDT SENADGQSDE NKEDYTIPDE ENSP00000378284/1-847 AALENGIKNE ENTEPGAESS ENADDPNKDT SENADGQSDE NKDDYTIPDE ENSBTAP00000051115/1-844 AALENGIKNE ENTEPGAESA ENADDPNKDT SENADGQSDE NKEDYTIPDE 851 900 ENSTTRP00000003509/1-893 YRIGPYQPNV PVGIDYVIPK TGFYCKLCSL FYTNEEVAKN THCSSLPHYQ bmy_07879T0/1-915 YRIGPYQPNV PVGIDYVIPK TGFYCKLCSL FYTNEEVAKN THCSSLPHYQ BACU004117/1-623 YRIGPYQPNV PVGIDYVIPK TGFYCKLCSL FYTNEEVAKN THCSSLPHYQ ENSP00000378284/1-847 YRIGPYQPNV PVGIDYVIPK TGFYCKLCSL FYTNEEVAKN THCSSLPHYQ ENSBTAP00000051115/1-844 YRIGPYQPNV PVEISE---- ---------- ---------- ---------- 901 950 ENSTTRP00000003509/1-893 KLKDFL-KLA DDQQSRA-- bmy_07879T0/1-915 KLKKFLNKLA XERRQKKEA BACU004117/1-623 KLKKFLNKLA EERRQKKEA ENSP00000378284/1-847 KLKKFLNKLA EERRQKKET ENSBTAP00000051115/1-844 ---------- ---------