KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 18:00:52 2014  Check: 00 ..

 Name: ENSBTAP00000051138/1-304  Len:    315  Check:  6555  Weight:  1.00
 Name: ENSP00000352272/1-299     Len:    315  Check:  9641  Weight:  1.00
 Name: bmy_08679T0/1-307         Len:    315  Check:  1565  Weight:  1.00
 Name: ENSTTRP00000011422/1-298  Len:    315  Check:  8663  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000051138/1-304  MPLSGTPAPN KKRKSSKLIM ELTGGGQESS GLNLGKKISV PRDVMLEELS 
ENSP00000352272/1-299     MPLSGTPAPN KKRKSSKLIM ELTGGGQESS GLNLGKKISV PRDVMLEELS 
bmy_08679T0/1-307         MPVSETPAPN KKRKSSKLIM ELTGGGRESS GLNLGKKISV PRDVMLEELS 
ENSTTRP00000011422/1-298  MPLSGTPAPN KKRKSSKLIM ELTGGGQESS GLNLGKKISV PRDVMLEELS 


                          51                                                 100
ENSBTAP00000051138/1-304  LLTNRGSKMF KLRQLRVEKF IYENHPDVFS DSSMDRFQKF IPTVGGQLGT 
ENSP00000352272/1-299     LLTNRGSKMF KLRQMRVEKF IYENHPDVFS DSSMDHFQKF LPTVGGQLGT 
bmy_08679T0/1-307         LLTNRGSKMF KLRQMRVEKF IYENHPDVFS DSSMDHFQKF LPTVGGQLGT 
ENSTTRP00000011422/1-298  LLTNRGSKMF KLRQMRVEKF IYENHPDVFS DSSMDHFQKF LPTVGGQLGT 


                          101                                                150
ENSBTAP00000051138/1-304  AGQGFSYSK- -SSGGGQAGR SGSAGQYGSD QQHHHQGSGG SGSGSGPGSG 
ENSP00000352272/1-299     AGQGFSYSKS NGRGGSQAGG SGSAGQYGSD QQ-HHLGSGS ---GAG-GTG 
bmy_08679T0/1-307         AGQGFSYSK- -GSGGGQAGG SGSAGQYGSD EHHHHQGPGS ---GYG-GTG 
ENSTTRP00000011422/1-298  AGQGFSYSK- -GSGGGQAGG SGSAGQYGSD EHHHHQGPGS ---GYR-GTD 


                          151                                                200
ENSBTAP00000051138/1-304  GALPGGHSGR GGAAGTRGRS ESGTN----- ----NQAGGE GKHITVFKTY 
ENSP00000352272/1-299     G--PAGQAGR GGAAGTAGVG ETGSG----- ----DQAGGE GKHITVFKTY 
bmy_08679T0/1-307         G--PGGQTGQ GGAAGTAGVG ETGLGKYPHP RIMYDQAGGE GKHISVFKTY 
ENSTTRP00000011422/1-298  G--PGGQTGQ GGAAGTAGVG ETGLD----- ----DQAGGE GKHITVFKTY 


                          201                                                250
ENSBTAP00000051138/1-304  ISPWEKAMGI DPQQKVELGI DLLAYGAKAE LPKYKSFNRT AMPYGGYEKA 
ENSP00000352272/1-299     ISPWERAMGV DPQQKMELGI DLLAYGAKAE LPKYKSFNRT AMPYGGYEKA 
bmy_08679T0/1-307         ISPWERAMGV DSQQKVELGI NLLAHGAKGD LPQYKSFNRT AMPYGGYEKA 
ENSTTRP00000011422/1-298  ISPWERAMGV DSQQKVELGI NLLAHGAKAD LPQYKSFNRT AMPYGGYEKA 


                          251                                                300
ENSBTAP00000051138/1-304  SKRMTFQMPK FDLGPLLSEP LVLYNQNLSN RPSFNRTPIP WLSSGEPVDY 
ENSP00000352272/1-299     SKRMTFQMPK FDLGPLLSEP LVLYNQNLSN RPSFNRTPIP WLSSGEPVDY 
bmy_08679T0/1-307         SKRMTFQMPK FDLGPLLSEP LVLYNQNLSN RPSFNRTPIP WLSSGEPVDY 
ENSTTRP00000011422/1-298  SKRMTFQMPK FDLGPLLSEP LVLYNQNLSN RPSFNRTPIP WLSSGEPVDY 


                          301                                                350
ENSBTAP00000051138/1-304  NVDISIPLDG ETEEL 
ENSP00000352272/1-299     NVDIGIPLDG ETEEL 
bmy_08679T0/1-307         NVDIGIPLDG ETEEL 
ENSTTRP00000011422/1-298  NVDIGIPLDG ETEEL