KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:53 2014 Check: 00 .. Name: ENSTTRP00000005577/1-755 Len: 778 Check: 7472 Weight: 1.00 Name: BACU010181/1-514 Len: 778 Check: 6695 Weight: 1.00 Name: ENSP00000435466/1-778 Len: 778 Check: 808 Weight: 1.00 Name: bmy_16812T0/1-556 Len: 778 Check: 8155 Weight: 1.00 Name: ENSBTAP00000051156/1-573 Len: 778 Check: 4039 Weight: 1.00 // 1 50 ENSTTRP00000005577/1-755 ---------- --------EL GLQKRGCCLV LGYMAKDKFR RMNEGQVYSF BACU010181/1-514 ---------- ---------- ---------- ---------- ---------- ENSP00000435466/1-778 MKPFQLDLLF VCFFLFSQEL GLQKRGCCLV LGYMAKDKFR RMNEGQVYSF bmy_16812T0/1-556 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051156/1-573 ---------- ---------- ---------- ---------- ----GQVYSF 51 100 ENSTTRP00000005577/1-755 SQQPQDQAVV SGQPVTLLCA IPEYDGFVLW IKDGLALGVG RDLSSYPQYL BACU010181/1-514 ---------- ---------- ---------- ---------- ---------- ENSP00000435466/1-778 SQQPQDQVVV SGQPVTLLCA IPEYDGFVLW IKDGLALGVG RDLSSYPQYL bmy_16812T0/1-556 ---------- --PPL----- ---------- ---------- ---------- ENSBTAP00000051156/1-573 SQQPQDQAVV SGQPVTLLCA IPEYDGFVLW IKDGLALGVG RDLSSYPQYL 101 150 ENSTTRP00000005577/1-755 VVGNHLSGEH HK--IRAELQ DDAVYEC-AI QAAIRSRPAR LTV-VPPDDP BACU010181/1-514 ---------- ---------- ---------- ---------- ---------- ENSP00000435466/1-778 VVGNHLSGEH HLKILRAELQ DDAVYECQAI QAAIRSRPAR LTVLVPPDDP bmy_16812T0/1-556 ---------- ---------- ---------- -------PA- ----VPPDDP ENSBTAP00000051156/1-573 VVGNHLSGEH HLKILRAELQ DDAVYECQAI QAAIRSRPAR LTVLVPPDDP 151 200 ENSTTRP00000005577/1-755 VILGGPVISL RAGDPLNLTC HADNAKPAAS IIWLRKGEVI NGATYSKTLL BACU010181/1-514 ---------- --------MC PAPREKSP-- ---------- ---------- ENSP00000435466/1-778 VILGGPVISL RAGDPLNLTC HADNAKPAAS IIWLRKGEVI NGATYSKTLL bmy_16812T0/1-556 IILGGPVISL RAGDPLNLTC HADNAKPAAS IIWLRKGEVI NGATYSKTLL ENSBTAP00000051156/1-573 VILGGPVISL RAGDPLNLTC HADNAKPAAS IIWLRKGEVI NGATYSKTLL 201 250 ENSTTRP00000005577/1-755 RDGKRESIVS TLFISPGDVE NGQSIVCRAT NKAIPGGKET SVTIDIQHPP BACU010181/1-514 ---------- ---------- ---------- ----PGGKDA LAT------- ENSP00000435466/1-778 RDGKRESIVS TLFISPGDVE NGQSIVCRAT NKAIPGGKET SVTIDIQHPP bmy_16812T0/1-556 RDGKRESIVS TLFISPGDVE NGQSIVCRAT NKAIPGGKET SVTIDIQHPP ENSBTAP00000051156/1-573 RDGKRESIVS TLFISPGDVE NGQSIVCRAT NKAIPGGKET SVTIDIQHPP 251 300 ENSTTRP00000005577/1-755 LVNLSVEPQP VLEDNVVTFH CSAKANPAVT QYRWAKRGQI IKEASGEVYR BACU010181/1-514 ---------- ---------- -RGPHQPGRL RCRWAKRGQI IKEASGEVYR ENSP00000435466/1-778 LVNLSVEPQP VLEDNVVTFH CSAKANPAVT QYRWAKRGQI IKEASGEVYR bmy_16812T0/1-556 LVNLSVEPQP VLEDNVVTFH CSAKANPAVT QYRWAKRGQI IKEASGEVYR ENSBTAP00000051156/1-573 LVNLSVEPQP VLEDNVVTFH CSAKANPAVT QYRWAKRGQI IKEASGEVYR 301 350 ENSTTRP00000005577/1-755 TTVDYTYFSE PISCEATNAL GSTNISRNVD VYXXXXXXXX XXXXXXXXXX BACU010181/1-514 TTVDYTYFSE PISCEATNAL GSTNVSRNVD VYFGPRMTTE PQSLLVDLGS ENSP00000435466/1-778 TTVDYTYFSE PVSCEVTNAL GSTNLSRTVD VYFGPRMTTE PQSLLVDLGS bmy_16812T0/1-556 TTVDYTYFSE PISCEATNAL GSTNVSRNVD VYFGPRMTTE PQSLLVDLGS ENSBTAP00000051156/1-573 TTVDYTYFSE PVSCEVTNAL GSTNISRTVD VYFGPRMTTE PQSLLVDLGS 351 400 ENSTTRP00000005577/1-755 XXXXXXXXXX XXXXXXXXXX XXXXXVLSNE KTLTLKTVRQ EDAGKYVCRA BACU010181/1-514 DAVFSCAWTG NPSLTIVWMK RGSGVVLSNE KTLTLKTVRQ EDAGKYVCRA ENSP00000435466/1-778 DAIFSCAWTG NPSLTIVWMK RGSGVVLSNE KTLTLKSVRQ EDAGKYVCRA bmy_16812T0/1-556 DAVFSCAWTG NPSLTIVWMK RGSGVVLSNE KTLTLKTVRQ EDAGKYVCRA ENSBTAP00000051156/1-573 DAVFSCAWTG NPSLTIVWMK RGSGVVLSNE KTLTLKAVRQ EDAGKYVCRA 401 450 ENSTTRP00000005577/1-755 VVPRVGAGER EVTLTVNG-P IISSTQTQHA LHGXXXXXXX XXXXXXXXXX BACU010181/1-514 VVPRVGAGER EVTLTVNGPP IISSTQTQHA LHGEKGQIKC FIRSTPPPDR ENSP00000435466/1-778 VVPRVGAGER EVTLTVNGPP IISSTQTQHA LHGEKGQIKC FIRSTPPPDR bmy_16812T0/1-556 VVPRVGAGER EVTLTVNGPP IISSTQTQHA LHGEKGQIKC FIRSTPPPDR ENSBTAP00000051156/1-573 VVPRVGAGER EVTLTVNGPP IISSTQTQHA LHGEKGQIKC FIRSTPPPDR 451 500 ENSTTRP00000005577/1-755 XAWSWKENVL ESGTSGRYTV ETVSTEEGVI STLTISSIVR ADFQTIYNCT BACU010181/1-514 IAWSWKENVL ESGTSGRYTV ETVSTEEGVI STLTISNIVR ADFQTIYNCT ENSP00000435466/1-778 IAWSWKENVL ESGTSGRYTV ETISTEEGVI STLTISNIVR ADFQTIYNCT bmy_16812T0/1-556 IAWSWKENVL ESGTSGRYTV ETVSTEEGVI STLTISNIVR ADFQTIYNCT ENSBTAP00000051156/1-573 IAWSWKENVL ESGTSGRYTV ETVSTEEGVI STLTISNIVR ADFQTIYNCT 501 550 ENSTTRP00000005577/1-755 AWNSFGSDTE IIRLKEQGSE MKSGAGLEAE AVPMAVIIGV AVGAGVAFLV BACU010181/1-514 AWNSFGSDTE IIRLKEQ--- ---------E AVPMAVIIGV AVGAGVAFLV ENSP00000435466/1-778 AWNSFGSDTE IIRLKEQGSE MKSGAGLEAE SVPMAVIIGV AVGAGVAFLV bmy_16812T0/1-556 AWNSFGSDTE IIRLKEQGSE MKSGAGLEAE AVPMAVIIGV AVGAGVAFLV ENSBTAP00000051156/1-573 AWNSFGSDTE IIRLKEQGSE MKSGAGLEAE AVPMAVIIGV AVGAGVAFLV 551 600 ENSTTRP00000005577/1-755 LLATIVAFCC ARSQRNLKGV VSARNDIRVE IVHKEPASGR EAEEQPTIKQ BACU010181/1-514 LLATIVAFCC ARSQRNLKGV VSAKNDIRVE IVHKEPASGR EAEEHPTIKQ ENSP00000435466/1-778 LMATIVAFCC ARSQRNLKGV VSAKNDIRVE IVHKEPASGR EGEEHSTIKQ bmy_16812T0/1-556 LLATIVAFCC ARSQRNLKGV VSAKNDIRVE IVHKEPASGR EAEEHPTIKQ ENSBTAP00000051156/1-573 LLATIVAFCC ARSQRNLKGV VSAKNDIRVE IVHKEPTSGR EAEEHPTIKQ 601 650 ENSTTRP00000005577/1-755 LMMDRGEFQQ DSVLKQLEVL KEEEKEFQNL KDPTNGYYSV NTFKEHHSTP BACU010181/1-514 LMMDRGEFQQ DSVLKQLEVL KEEEKEFQNL KDPTNGYYSV NTFKEHHSTP ENSP00000435466/1-778 LMMDRGEFQQ DSVLKQLEVL KEEEKEFQNL KDPTNGYYSV NTFKEHHSTP bmy_16812T0/1-556 LMMDRGEFQQ DSVLKQLEVL KEEEKEFQNL KVRRA----- ----PGHNTP ENSBTAP00000051156/1-573 LMVRMSSY-- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000005577/1-755 AISLSGCQPD LRPAGKQRVP TGMSFTNIYS TLSGQGRLYD YGQRFVLGTG BACU010181/1-514 AISLSGCQAD LRPAGKQRVP TGMSFTNIYS TLSGQGRLYD YGQRFVLGTG ENSP00000435466/1-778 TISLSSCQPD LRPAGKQRVP TGMSFTNIYS TLSGQGRLYD YGQRFVLGMG bmy_16812T0/1-556 GIWSSALMTQ APDPGTDR-- ---------- ---------- ---------- ENSBTAP00000051156/1-573 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000005577/1-755 SSSIELCERE FQRGSLSDSS SFLDTQCDSS VSSSGKQDGY VQFDKASKAS BACU010181/1-514 SSSIELCERE FQRGSLSDSS SFLDTQCDSS VSSSGKQDGY VQFDKASKAS ENSP00000435466/1-778 SSSIELCERE FQRGSLSDSS SFLDTQCDSS VSSSGKQDGY VQFDKASKAS bmy_16812T0/1-556 ---------- ---------- ---------- ------RDSP PQRHLLSRPN ENSBTAP00000051156/1-573 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000005577/1-755 ASSSHHSQSS SQNSDPSRPL QRRMQTHV BACU010181/1-514 ASSSHHSQSS SQNSDPSRPL QRRMQTHV ENSP00000435466/1-778 ASSSHHSQSS SQNSDPSRPL QRRMQTHV bmy_16812T0/1-556 TKEVRELRLS FHSSPLPRPP HQ------ ENSBTAP00000051156/1-573 ---------- ------PCPI QTSVP---