KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:00:54 2014 Check: 00 .. Name: BACU003845/1-500 Len: 655 Check: 6291 Weight: 1.00 Name: bmy_19880T0/1-522 Len: 655 Check: 4812 Weight: 1.00 Name: ENSP00000310219/1-643 Len: 655 Check: 9980 Weight: 1.00 Name: ENSBTAP00000051168/1-643 Len: 655 Check: 2286 Weight: 1.00 // 1 50 BACU003845/1-500 ---------- ---------- ---------- ---------- ---------- bmy_19880T0/1-522 ---------- ---------- ---------- ---------- ---------- ENSP00000310219/1-643 MQAPRELAVG IDLGTTYSCV GVFQQGRVEI LANDQGNRTT PSYVAFTDTE ENSBTAP00000051168/1-643 MSAARELAIG IDLGTTYSCV GVFQHGRVEI LANDQGNRTT PSYVAFSDTE 51 100 BACU003845/1-500 ---------- ---------- ---------- ---------- ---------- bmy_19880T0/1-522 ---------- ---------- ---------- ---------- ---------- ENSP00000310219/1-643 RLVGDAAKSQ AALNPHNTVF DAKRLIGRKF ADTTVQSDMK HWPFRVVSEG ENSBTAP00000051168/1-643 RLVGDAAKSQ AALNPHNTVF DVKRLIGRRF TDPSVQSDMK HWPFQVVSEG 101 150 BACU003845/1-500 ---------- ---------- ---MVLSKM- ETTEAYLGQP LRHAAITVPA bmy_19880T0/1-522 ---------- ---------- ---MVLSKM- ETAEAYLGQP LRHAVITVPA ENSP00000310219/1-643 GKPKVRVCYR GEDKTFYPEE ISSMVLSKMK ETAEAYLGQP VKHAVITVPA ENSBTAP00000051168/1-643 GKPKVRVSYR GEDKAFYPEE ISSMVLSKMK ETAEAYLGQP VKHAVITVPA 151 200 BACU003845/1-500 YFNDSQRQAT KDAGAIAGLN VLRIINEPTA AAMAYGLDRQ GAGERNALIF bmy_19880T0/1-522 YFNDSQRQAT KDAGAIAGLN MLRIINEPTA AAMVYGLDRR GAGERNALIF ENSP00000310219/1-643 YFNDSQRQAT KDAGAIAGLN VLRIINEPTA AAIAYGLDRR GAGERNVLIF ENSBTAP00000051168/1-643 YFNDSQRQAT KDAGAIAGLN VLRIINEPTA AAIAYGLDRL GAGERNVLIF 201 250 BACU003845/1-500 DLGGGTFHLS ALTIDAGVFE VKATAGDTHL GGEDFDNRLA NHFVEEFRRK bmy_19880T0/1-522 DLGGGTFHVS ALTIDAGVFE VKATAGDTHL GGEDFDNLLV NHFVEEFRRK ENSP00000310219/1-643 DLGGGTFDVS VLSIDAGVFE VKATAGDTHL GGEDFDNRLV NHFMEEFRRK ENSBTAP00000051168/1-643 DLGGGTFDVS VLTIDAGVFE VKATAGDTHL GGEDFDNRLV NHFMEEFRRK 251 300 BACU003845/1-500 HGKDLSRNKR ALRRLCTTYE RAKRTLSSST QAALEIDSLF EGVDFYTSIT bmy_19880T0/1-522 HGKDLSRNKR ALRRLCTAYE RAKRTLSSST QATLEIDSLF EGVDFYTSIT ENSP00000310219/1-643 HGKDLSGNKR ALRRLRTACE RAKRTLSSST QATLEIDSLF EGVDFYTSIT ENSBTAP00000051168/1-643 HGKDLSRNKR ALRRLRTACE RAKRTLSSST QATLEIDSLF EGVDFYTSIT 301 350 BACU003845/1-500 RARFEELCSD LFCSTLEPVE KALRGAKLDK AQIHDIVLVG GSTRIPKVQK bmy_19880T0/1-522 RARFEELCSD LFCSTLEPVE KALRGAKLDK AQIHDIVLVG GSTRIPKVQK ENSP00000310219/1-643 RARFEELCSD LFRSTLEPVE KALRDAKLDK AQIHDVVLVG GSTRIPKVQK ENSBTAP00000051168/1-643 RARFEELCSD LFRSTLEPVE KALRDAKLGK AQIHDIVLVG GSTRIPKVQK 351 400 BACU003845/1-500 FLQDLFNGRE LNKSINTDEA VAYGAAVQAA VLMGG----- ---------- bmy_19880T0/1-522 FLQDFFNGRE LNKSINPDES VAYGAAVQAA VLMGDKCEKV QDLLLLDVAP ENSP00000310219/1-643 LLQDFFNGKE LNKSINPDEA VAYGAAVQAA VLMGDKCEKV QDLLLLDVAP ENSBTAP00000051168/1-643 LLQDFFDGRE LNKSINPDEA VAYGAAVQAA VLMGDTCEKV QDLLLLDVAP 401 450 BACU003845/1-500 ---------- ------QRNA TIPTKRTQTF TTYSDNQPGV LNQVYEGERP bmy_19880T0/1-522 LSLGLETAGG VMTTLIQRNA TIPTKRTQTF TTYSDNQPGV LIQVYEGERA ENSP00000310219/1-643 LSLGLETAGG VMTTLIQRNA TIPTKQTQTF TTYSDNQPGV FIQVYEGERA ENSBTAP00000051168/1-643 LSLGLETAGG VMTTLIQRNA TIPTKQTQTF TTYSDNQPGV LIQVYEGERA 451 500 BACU003845/1-500 MTRDNNRLGC FELSGIPPAP RGVPQIEVTF DMDAGGILSV TATDRSTGNA bmy_19880T0/1-522 MTRDNNQLGC FELSGIPPAP RGVPQIEVTF DMDAGGILSV TATDRSTGKA ENSP00000310219/1-643 MTKDNNLLGR FELSGIPPAP RGVPQIEVTF DIDANGILSV TATDRSTGKA ENSBTAP00000051168/1-643 MTRDNNLLGR FELSGIPPAP RGVPQIEVTF DIDANGILSV TATDRSTGKA 501 550 BACU003845/1-500 NKITITDDKG RLSKEEVEKM VCEAEQDKDV QDEDEAQRDR VAAKNSLEAC bmy_19880T0/1-522 NKITITDDKG RLSKEEVEKM VCEAEQDKDV PDEDEAQRDR VAAKNSLEAC ENSP00000310219/1-643 NKITITNDKG RLSKEEVERM VHEAEQYK-- -AEDEAQRDR VAAKNSLEAH ENSBTAP00000051168/1-643 NKITITNDKG RLSKEEVERM VREAEQYK-- -AEDEAQRDR VAAKNSLEAY 551 600 BACU003845/1-500 VFHVKSSLQE ERLRDKIPQE DRRKVQDKCQ EVLAWLEHSQ LAEKEESEHQ bmy_19880T0/1-522 VFHVKSSLQE ERLRDKIPEE DRCKVQDKCQ EVLAWLEHSQ LAEKEESEHQ ENSP00000310219/1-643 VFHVKGSLQE ESLRDKIPEE DRRKMQDKCR EVLAWLEHNQ LAEKEEYEHQ ENSBTAP00000051168/1-643 VFHVKSSLQE ERLRDKIPEE DRRKVQDKCQ EVLAWLEHNQ LADKEEYEHQ 601 650 BACU003845/1-500 KRELEHVCRP IFSRLYGSLV SLAVAVVELK PDREPPVLAL SLRKSIKWPL bmy_19880T0/1-522 KRELEHVCRP IFSRLYGGPG VPGSSSCGAQ ARQGAPSTG- --------PV ENSP00000310219/1-643 KRELEQICRP IFSRLYGGPG VPGGSSCGTQ ARQGDPSTG- --------PI ENSBTAP00000051168/1-643 KRELEQICCP IFSRLYGGPG VSVGSSCGAQ ARHGAPSTG- --------PV 651 700 BACU003845/1-500 LARQL bmy_19880T0/1-522 IEEVD ENSP00000310219/1-643 IEEVD ENSBTAP00000051168/1-643 IEEVD