KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:00:54 2014 Check: 00 .. Name: ENSBTAP00000051181/1-1455 Len: 1480 Check: 9715 Weight: 1.00 Name: ENSTTRP00000012461/1-910 Len: 1480 Check: 6719 Weight: 1.00 Name: bmy_04753T0/1-1417 Len: 1480 Check: 2599 Weight: 1.00 Name: BACU017206/1-1455 Len: 1480 Check: 5220 Weight: 1.00 // 1 50 ENSBTAP00000051181/1-1455 TKKYLILYFI VFISKFVFLR DTRPFLIYNE DHKRCVEALS PSAVQTAVCD ENSTTRP00000012461/1-910 ---------- ---------- ---------- ---------- ---------- bmy_04753T0/1-1417 ---------- ---------- -TRQFLIYNE DHKRCVEALT PSAIQTAVCN BACU017206/1-1455 MKLSALLAFL SLLPVAVQLL DTRQFLIYNE DHKRCVEALT PSAVQTAVCN 51 100 ENSBTAP00000051181/1-1455 PNNEAQKFRW VSESQIMSVA LKLCLGVPSK TDWVPVTLYA CDSRSEFQKW ENSTTRP00000012461/1-910 ---------- ---------- ---------- ---------- ---------- bmy_04753T0/1-1417 QDNEAQKFRW VSESQIMSVA FKLCLGVPSK TDWVSVTLYA CDAKSEFQKW BACU017206/1-1455 QDNDAQKFRW VSESQIMSVA FKLCLGVPSK TDWVVVTLYA CDAKSEFQKW 101 150 ENSBTAP00000051181/1-1455 ECKNDTLLGI KGEDLFFNYG NRQEKNIMLY KGSGLWSRWK IYGTTDDLCS ENSTTRP00000012461/1-910 ---------- ---------- ---------- ---------- ---------- bmy_04753T0/1-1417 ECKNDTLLGI KGEDLFFNYG NRQEKNIMLY KGSGLWSRWK VYGTTDDLCS BACU017206/1-1455 ECKNDTLLGI KGEDLFFNYG NRQEKNIMLY KGSGLWSRWK VYGTTDDLCA 151 200 ENSBTAP00000051181/1-1455 RGYEAMYTLL GNANGATCAF PFKFENKWYG ECTKAGRSDG WLWCGTTTDY ENSTTRP00000012461/1-910 ---------- ---------- ---------- ---------- ---------- bmy_04753T0/1-1417 RGYEAMYTLL GNANGATCAF PFKFENKWYA DCTTAGRSDG WLWCGTTTDY BACU017206/1-1455 RGYEAMYTLL GNANGATCAF PFKFENKWYA DCTTAGRSDG WLWCATTTDY 201 250 ENSBTAP00000051181/1-1455 DTDRLFGYCP LKFEGSESLW TKDPLTSIYY QINSKAALTW HQARKSCQQQ ENSTTRP00000012461/1-910 ---------- ---------- ---------- ---------- ---------- bmy_04753T0/1-1417 DMDRLFGYCP LKFEGSESLW NKDPLTSISY QINSKSALTW HQARKSCQQQ BACU017206/1-1455 DVDRLFGYCP LKFEGSESLW NKDPLTSISY QINSQSALTW HQARKSCQQQ 251 300 ENSBTAP00000051181/1-1455 DAELLSITEI HEQTYLTGLT NSLTSGLWIG LNSLNFNSGW QWSGGSPFRY ENSTTRP00000012461/1-910 ---------- YEQAFLTS-- -------WVG LR-------- ------PERY bmy_04753T0/1-1417 NAELLSVTEI HEQTYLTGLT SSLTSGLWIG LNSLSFNSGW QWSGGSPFRY BACU017206/1-1455 NAELLSVTEI HEQTYLTGLT SSLTSGLWIG LNSLSFNSGW QWSGGSPFRY 301 350 ENSBTAP00000051181/1-1455 LNWLPGSPSA EPGKSCVSLN PGKNAKWENL QCVQKLGYIC KKGNTTLNPF ENSTTRP00000012461/1-910 ---------- ---------- ---------- ---------- ---------- bmy_04753T0/1-1417 LNWLPGSPSA EPGKSCVSLN PGKSAKWENL QCVQKLGYIC KRGNTTLNSF BACU017206/1-1455 LNWLPGSPSA EPGKSCVSLN PGKSAKWENL QCVQKLGYIC KKGNTTLNSF 351 400 ENSBTAP00000051181/1-1455 VIPSESDVPT NCPSQWWPYA GHCYKIYREE KKIQRDALRA CRKEGGDLAS ENSTTRP00000012461/1-910 ---------- ---------- ---------- ---------- ---------- bmy_04753T0/1-1417 VIPSESDVPT NCPSQWWPYA GHCYKIYREE KKIQRDALIA CRKEGGDLAS BACU017206/1-1455 VIPSESDVST NCPSQWWPYA GHCYKIYREE KKIQRDALIA CRKEGGDLAS 401 450 ENSBTAP00000051181/1-1455 IHSIEEFDFI ISQLGYEPSD ELWIGLNDIK IQMYFEWSDG TPVTFTKWLH ENSTTRP00000012461/1-910 ---------- ---------- -FWIGLSDVQ NKGTFQWTIA EGVQFTHW-- bmy_04753T0/1-1417 IHSIEEFDFI ISQLGYEPSD ELWIGLNDIK IQMYFEWSDG APVTFTKWLP BACU017206/1-1455 IHSIEEFDFI ISQLGYEPSD ELWIGLNDIK IQMYFEWSDG APVTFTKWLR 451 500 ENSBTAP00000051181/1-1455 GEPSHENNRQ EDCAVMKGKD GYWADRACER PLGYICKMKS QAQTPGVVEV ENSTTRP00000012461/1-910 ---------- ---------- ---------- ---------- ---------- bmy_04753T0/1-1417 GEPSHENNRQ EDCVVMKGKD GYWADRACEQ SLGYICKMKS QAQTPGIVEV BACU017206/1-1455 GEPSHENNRQ EDCVVMKGKD GYWADRACEQ SLGYICKMKS QAQTPGIVEV 501 550 ENSBTAP00000051181/1-1455 EAGCQKGWKR HGFYCYLIGH TLSTFTEANQ TCVSEKAYLT TVEDRYEQAF ENSTTRP00000012461/1-910 ---------- ---------- ---------- ---------- ---------- bmy_04753T0/1-1417 ETGCRRGWKR HGFYCYLIGH TLSTFTEANQ TCVNEKAYLT TIEDRYEQAF BACU017206/1-1455 ETGCRRGWKR HGFYCYLIGH TLSTFTEANQ TCVNEKAYLT TIEDRYEQAF 551 600 ENSBTAP00000051181/1-1455 LTSLVGLRPE RYFWIGLSDV QHKGTFQWTV EEGVQFTHWN SDMPGRKAGC ENSTTRP00000012461/1-910 ---------- ---------- ---------- ---------N SDMPGRKAGC bmy_04753T0/1-1417 LTR------- ---------- ---------- ---------- -----RKAGC BACU017206/1-1455 LTSLVGLRPE RYFWTGLSDV QNKGTFQWTI AEGVQFTHWN SDMPGRKAGC 601 650 ENSBTAP00000051181/1-1455 VAMKTGVAGG LWDVLRCEEK AKFVCKHWAE GVTRPPEPTT TPEPKCPEDW ENSTTRP00000012461/1-910 VAMRTGVAGG LWDVLRCEEK AKFVCKHWAE GVTRPPEPTT TPEPKCPEDW bmy_04753T0/1-1417 VAMRTGVAGG LWDVLRCEEK AKFVCKHWAE GVTRPPEPTT TPEPKCPEDW BACU017206/1-1455 VAMRTGVAGG LWDVLRCEEK AKFVCKHWAE GVTRPPEPTT TPEPKCPEDW 651 700 ENSBTAP00000051181/1-1455 GASSKTSLCF KLFAKGKHEK KTWFESRDFC RALGGDLASI NSKEEQQAIW ENSTTRP00000012461/1-910 GTSSKTSLCF KLFTKGKHEK KTWFESRDFC RALGGDLASV NNKEEQQTIW bmy_04753T0/1-1417 GTSSKTSLCF KLFTKGKHEK KTWFESRDFC RALGGDLASI NNKEEQQTIW BACU017206/1-1455 GTSSKTSLCF KLFTKGKHEK KTWFESRDFC RALGGDLASI NNKEEQQTIW 701 750 ENSBTAP00000051181/1-1455 RLVTASGSYH ELFWLGLTYG SPSEGFTWSD GSPVSYENWA YGEPNNYQNV ENSTTRP00000012461/1-910 RLITTSGSYH ELFWLGLTYG SPSEGFTWSD GSPVSYENWA YGEPNNYQNV bmy_04753T0/1-1417 RLITASGSYH ELFWLGLTYG SPSEGFTWSD GSPVSYGNWA FGEPNNYQSV BACU017206/1-1455 RLITASGSYH ELFWLGLTYG SPSEGFTWSD GSPVSYENWA YGEPNNYQNV 751 800 ENSBTAP00000051181/1-1455 EYCGELKGDP GMSWNDINCE HLNNWICQIR KGQTPKPEPT PAPHDNLPVT ENSTTRP00000012461/1-910 EYCGELKGDP GMSWNDINCE HLNNWICQIR KGQTPKPEPT PAPQDNPPVT bmy_04753T0/1-1417 EYCGELKGDP GMSWNDINCE HLNNWICQIR KGQTPKPEPT PAPQDNPPVT BACU017206/1-1455 EYCGELKGDP GMSWNDINCE HLNNWICQIR KGQTPKPEPT PAPQDNPPVT 801 850 ENSBTAP00000051181/1-1455 DDGWVIYKDY QYYFSKEKAT MDKAREFCKR NFGDLVSIRS ESEKKFLWKY ENSTTRP00000012461/1-910 DDGWAIYKDY QYYFSKEKET MDKAREFCKR NFGDLVSIRS ESEKKFLWKY bmy_04753T0/1-1417 DDGWAIYKDY QYYFSKEKET MDKAREFCKR NFGDLVSIRS ESEKKFLWKY BACU017206/1-1455 DDGWAIYKDY QYYFSKEKET MDKAREFCKR NFGDLVSIRS ESEKKFLWKY 851 900 ENSBTAP00000051181/1-1455 VNRNDVQPAY FIGLLISLDK KFIWMDGSKV DYVAWATGEP NFANDDENCV ENSTTRP00000012461/1-910 XXXXXXXXXX XXXXXXXXXX XXXWMDGSKV DYVAWATGEP NFANDDENCV bmy_04753T0/1-1417 VNRNDAQPAY FIGLLISLDK KFTWMDGSKV DYVAWATGEP NFANDDENCV BACU017206/1-1455 VNRNDAQPAY FIGLLISLDK KFTWMDGSKV DYVAWATGEP NFANDDENCV 901 950 ENSBTAP00000051181/1-1455 TMYSNSGFWN DINCGYPNAF ICQRHNSSIN ATVVPTTVSV PGGCKEGWNF ENSTTRP00000012461/1-910 TMYSNSGFWN DINCGSPNAF ICQRHNSSIN ATALPTTPSV PGGCKEGWNF bmy_04753T0/1-1417 TMYSNSGFWN DINCGSPNAF ICQRHNSSIN ATALPTTPSV PGGCKEGWNF BACU017206/1-1455 TMYSNSGFWN DINCGSPNAF ICQRHNSSIN ATALPTTPSV PGGCKEGWNF 951 1000 ENSBTAP00000051181/1-1455 YNHKCFKIFG FVEEERKNWQ EARKDCIGFG GNLASIYSEK EQAFLTYHMK ENSTTRP00000012461/1-910 YNYKCFKIFG FVEEERKNWQ EARKACIGFG GNLVSIHNEK EQAFLTYHMK bmy_04753T0/1-1417 YNYKCFKIFG FVEEERKNWQ EARKACIGFG GNLASIHNEK EQAFLTYHMK BACU017206/1-1455 YNYKCFKIFG FVEEERKNWQ EARKACIGFG GNLASIHNEK EQAFLTYHMK 1001 1050 ENSBTAP00000051181/1-1455 NSTFNAWTGL NDINSEHTFL WTDGRGVHYT NWGKGYPGGR RSSLSYEDAD ENSTTRP00000012461/1-910 NSTFHTWTGL NDVNSEHTFL WTDGRGVLYT NWGKGYPGGR RSSLSYEDAD bmy_04753T0/1-1417 NSTFNTWTGL NDVNSEHTFL WTDGRGVHYT NWGKGYPGGR RSSLSYEDAD BACU017206/1-1455 NSTFNTWTGL NDVNSEHTFL WTDGRGVHYT NWGKGYPGGR RSSLSYEDAD 1051 1100 ENSBTAP00000051181/1-1455 CVVVIGGNTR DAGKWMDDTC DSKRGYICQT HPDRSLPSSP TTIPTDGFIK ENSTTRP00000012461/1-910 CVLIIGGKSR DAGKWMDDTC DSKRGYICRT PPDPSLPSSP TTIPTDGFIK bmy_04753T0/1-1417 CVLIIGGKSR EAGKWMDDTC DSKRGYICQT LPDPSLPSSP TTIPTDGFIK BACU017206/1-1455 CVLIIGGKSR DAGKWMDDTC DSKRGYVCQT LPDPSLPSSP TTIPTDGFIK 1101 1150 ENSBTAP00000051181/1-1455 YGESSYSLMK LKLQWHEADD YCKMHTSHIA SILDPYSNAF AWMHMQTLNE ENSTTRP00000012461/1-910 YGESSYSLMK LKLQWHEADD YCKLHTSLIA SILDPYSNAF AWMQMQTLNE bmy_04753T0/1-1417 YGESSYSLVK LKLQWHEADD YCKLHTSLIA SILHPYSNAF AWMQMQTLNE BACU017206/1-1455 YGESSYSLVK LKLQWHEADD YCKLHTSLIA SILHPYSNAF AWMQMQTLNE 1151 1200 ENSBTAP00000051181/1-1455 PVWIALNSNL TNNDYIWTDK WRVRYTNWAP DEPRLKSACA YMDLDGYWKT ENSTTRP00000012461/1-910 PVWIALNSNL TNNEYVWTDK WRVRYTNWAS DEPRLKSACV YMDLDGYWKT bmy_04753T0/1-1417 PVWIALNSNL TNNEYVWTDK WRVRYTNWAX DEPRLKSACV YMDLDGYWKT BACU017206/1-1455 PVWIALNSNL TNNEYVWTDK WRVRYTNWAT DEPRLKSACV YMDLDGYWKT 1201 1250 ENSBTAP00000051181/1-1455 AQCNESFYFL CKRSDEIPAT EPPQLPGRCP ETEHSAWIPF HGHCYYIESS ENSTTRP00000012461/1-910 ARCNESFYFL CKRSDEIPAT EPPQLPGRCP ESEHTAWIPF HGHCYYIESS bmy_04753T0/1-1417 AHCNESFYFL CKRSDEIPAT EPPQLPGRCP ESEHTAWIPF HGHCYYIESS BACU017206/1-1455 AHCNESFYFL CKRSDEIPAT EPPQLPGRCP ESEHTAWIPF HGHCYYIESS 1251 1300 ENSBTAP00000051181/1-1455 FTRNWGQASL ECLRMGSSLV TIESAAELSF LSYRVEPLQS KTNFWIGLYR ENSTTRP00000012461/1-910 YTRNWGQASL ECLRMGSSLV TIESAAESSF LSYRVEPLQS KANFWIGLYR bmy_04753T0/1-1417 YTRNWGQASL ECLRMGSSLV TIESAAESSF LSYRVEPLQS KANFWIGLYR BACU017206/1-1455 YTRNWGQASL ECLRMGSSLV TIESAAESSF LSYRVEPLQS KANFWIGLYR 1301 1350 ENSBTAP00000051181/1-1455 NVEGMWVWIN NNPLSFVNWK TGDPSGERND CVTLYASSGL WSNIHCSSYK ENSTTRP00000012461/1-910 NVEGMWLWIN NNPLSFVNWK TGDPSGERND CVALYASSGF WSNIHCSSYK bmy_04753T0/1-1417 NVEGMWLWIN NNPLSFVNWK TGDPSGERND CVALYASSGF WSNIHCSSYK BACU017206/1-1455 NVEGMWLWIN NNPLSFVNWK TGDPSGERND CVALYASSGF WSNIHCSSYK 1351 1400 ENSBTAP00000051181/1-1455 GYICKRPK-- ---------- ------IVDA EPTHTLITTK ADPRKMEPSK ENSTTRP00000012461/1-910 GYICKRPK-- ---------- ------LVDA EPTHTLITTK ADPRKMGPSK bmy_04753T0/1-1417 GYICKRPKCK LEFVLWLPSL SNIKISVVDA EPTHALITTK ADPRKMGPSK BACU017206/1-1455 GYICKRPK-- ---------- ------FVDA EPTHTLITTK ADPRKMGPSK 1401 1450 ENSBTAP00000051181/1-1455 PSSSATGVVV IVVLLIIMGA GFAVYFFYKK RRVHLPREDA FENTLYFNSG ENSTTRP00000012461/1-910 PSSNVAGVVV IVVLLIITGA GFAAYLFYKK RRVPFPREDT FENTLYFNSG bmy_04753T0/1-1417 PSSNVAGVVV IVVLLIITGA GFAAYFFYKK RRVHFPREDT FENTLYFNSG BACU017206/1-1455 PSSNVAGVVV IVILLIITGA GFAAYFFYKK RRVHFPREDT FENTLYFNSG 1451 1500 ENSBTAP00000051181/1-1455 SSPGTNDTKD LMGNIEQNEH AAI------- ENSTTRP00000012461/1-910 SSPGTSDTKD LMGNIEQNEH AVI------- bmy_04753T0/1-1417 SSPGTSDTKD LMGNIEQNEH AIQEKDTEEN BACU017206/1-1455 SSPGTSDTKD LMGNIEQNEH AVV-------