KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:58 2014 Check: 00 .. Name: ENSP00000349238/1-1476 Len: 1551 Check: 2865 Weight: 1.00 Name: ENSTTRP00000009780/1-1437 Len: 1551 Check: 780 Weight: 1.00 Name: ENSBTAP00000051339/1-1463 Len: 1551 Check: 3603 Weight: 1.00 Name: bmy_10877T0/1-1180 Len: 1551 Check: 5789 Weight: 1.00 Name: BACU005331/1-1377 Len: 1551 Check: 4774 Weight: 1.00 // 1 50 ENSP00000349238/1-1476 MEGGKGPRLR DFLSGSLATW ALGLAGLVGE AEDSEGEEEE EEEEPPLWLE ENSTTRP00000009780/1-1437 ---------- ---------- ALGLAGLVGE ---PEGE-EE EEGEGPLCPE ENSBTAP00000051339/1-1463 MDGGKGPRIR DFLSGSLATW ALGLAGLVGE AEEPEGEEEE EEGEGPLCPE bmy_10877T0/1-1180 MDGGKGPRIR DFLSGSLATW ALGLAGLVGE AEEPEGE-EE EEGEGPLCPE BACU005331/1-1377 MDGGKGPRIR DFLSGSLATW ALGLAGLVGE AEEPEGE-EE EEGEGPLCPE 51 100 ENSP00000349238/1-1476 KRFLRLSDGA LLLRVLGIIA PSSRGGPRML RGLDGPAAWR VWNLNHLWGR ENSTTRP00000009780/1-1437 TRFLRLSDGA LLLRVLGVIA PSSRGGPQMI RGHDGPAAWR VWNLNHLWGR ENSBTAP00000051339/1-1463 KRFLRLSDGA LLLRVLGIIA PSSRGAPRMI RGRDGPAAWR LWNLNHLWGR bmy_10877T0/1-1180 KRFSRLSDGA LLLRVLGIIA PNSRGCPRMI RGHDGPAAWR VWNLNHLWGR BACU005331/1-1377 KRFSRLSDGA LLLRVLGIIA PNSRGGPRMI RGHDGPAAWR VWNLNHLWGR 101 150 ENSP00000349238/1-1476 LRDFY----- ---------- ---------- ---QEELQLL ILSPPPDLQT ENSTTRP00000009780/1-1437 LRDFY----- ---------- ---------- ---QEELQLL ILSPPPDLQA ENSBTAP00000051339/1-1463 LRDFY----- ---------- ---------- ---QEELQLL ILSPPPDLQM bmy_10877T0/1-1180 LRDFYQVRGQ EGEAEPGTPP VGRPFSHLPP RPPQEELQLL ILSPPPDLQA BACU005331/1-1377 LRDFY----- ---------- ---------- ---QEELQLL ILSPPPDLQA 151 200 ENSP00000349238/1-1476 LG-------- -FDPL----- ------SEEA VEQLEGVLRL LLGASVQCEH ENSTTRP00000009780/1-1437 LG-------- -FDPF----- ------SEEA VEELEGILRL LLGASVQCEH ENSBTAP00000051339/1-1463 LG-------- -FDPF----- ------SEEA VEELEGILRL LLGASVQCEH bmy_10877T0/1-1180 LGCSLPPPLP ASSPYPCPLT PCGLCPAEEA VEELEGILRL LLGASVQCEH BACU005331/1-1377 LG-------- -FDPF----- ------SEEA VEELEGILRL LLGASVQCEH 201 250 ENSP00000349238/1-1476 RELFIRHIQG LSLEVQSELA AAIQE----- ---------- ---------- ENSTTRP00000009780/1-1437 RELFIRHIQG LSLEVQSELA AAIQE----- ---------- ---------- ENSBTAP00000051339/1-1463 RELFIRHIQG LSLEVQSELA AAIQE----- ---------- ---------- bmy_10877T0/1-1180 RELFIRHIQG LSLDVQSELA AAIQEVQLWS AVWDTLPPTS LADLLSLCLQ BACU005331/1-1377 RELFIRHIQG LSLEVQSELA AAIQE----- ---------- ---------- 251 300 ENSP00000349238/1-1476 VTQPGAGVVL ALSGPDPGEL APAELEMLSR SLMGTLSKLA RERDLGAQRL ENSTTRP00000009780/1-1437 VTQPGAGLVL ALAGPEPGEL APPELEMLSR SLVGTLLRLA RERDVGAQRL ENSBTAP00000051339/1-1463 VTQPGAGLVL ALTGPEPGEL APPELEMLSR SLMGTLLKLA RERDLGAQRL bmy_10877T0/1-1180 VTQPGAGLVL PLAGPEPGEL APPELEMLSR SLVGTLLRLA RERDVGAQRL BACU005331/1-1377 VTQPGAGLVL ALAGPEPGEL APPELEMLSR SLVGTLLRLA RERDVGAQRL 301 350 ENSP00000349238/1-1476 AELLLEREP- LCLRPEAPSR APAEGPSHHL ALQLANAKAQ LRRLRQELEE ENSTTRP00000009780/1-1437 AELLLERQP- --PRPEAPAR TPPEGASHHL ALQLANTKAQ LRRVRQELEE ENSBTAP00000051339/1-1463 AELLLDREP- APLLPEAPAK IPSEGASHHL ALQLANAKAQ LRRLRQELEE bmy_10877T0/1-1180 AELLLERQPA APLLPEAPAR TPPEGASHHL ALQLANTKAQ LRRVRQELEE BACU005331/1-1377 AELLLERQA- APLLPEAPAR TPPEGASHHL ALQLANTKAQ LRRVRQELEE 351 400 ENSP00000349238/1-1476 KAELLLDSQA EVQGLEAEIR RLRQEAQALS GQAKRAELYR EEAEALRERA ENSTTRP00000009780/1-1437 KAELLLDSQV EVQGLEAEIR RLRQEAQALS GQAKRAELYR EEAEALRERA ENSBTAP00000051339/1-1463 KAELLLDSQA EVQGLEAEIR RLRQEAQALT GQAKRAELYR EEAEALRERA bmy_10877T0/1-1180 KAELLLDSQV EVQGLEAEIR RLRQEAQALS GQAKRAELYR EEAEALRERA BACU005331/1-1377 KAELLLDSQV EVQGLEAEIR RLRQEAQALS GQAKRAELYR EEAEALRERA 401 450 ENSP00000349238/1-1476 GRLPRLQEEL RRCRERLQAA EAYKSQLEEE RVLSGVLEAS KALLEEQLEA ENSTTRP00000009780/1-1437 GRLPRLQEEL RRCRERLQAA EACKGQLEEE RALSGALEAS KALLEEQLDA ENSBTAP00000051339/1-1463 GRLPRLQEEL RRCRERLQAA EACKGRLEEE RALSGALEAS KALLEEQLEA bmy_10877T0/1-1180 GRLPRLQEEL RRCRERLQAA EACKGQLEEE RVLSGALEAS KALLEEQLEA BACU005331/1-1377 GRLPRLQEEL RRCRERLQAA EACKGQLEEE RVLSGALEAS KALLEEQLEA 451 500 ENSP00000349238/1-1476 ARERCARLHE TQRENLLLRT RLGEAHAELD SLRHQVDQLA EENVELELEL ENSTTRP00000009780/1-1437 SQERCARLHE TQRENLLLRT RLGEAHAELS SLRHQVDQLA EENVELELEL ENSBTAP00000051339/1-1463 AQERCARLHE TQRENLLLRT RLGEAHAELD SLRHQVDQLA EENVELELEL bmy_10877T0/1-1180 AQERCARLHE TQRENLLLRT RLGEAHAELD SLRHQVDQLA EENVELELEV BACU005331/1-1377 AQERCARLHE TQRENLLLRT RLGEAHAELD SLRHQVDQLA EENVELELEV 501 550 ENSP00000349238/1-1476 QRSLEPPPGS PGEAPLAGAA PSLQDEVREA EAGRLRTLER ENRELRGLLQ ENSTTRP00000009780/1-1437 QRSLEPAPGS PGEAPLPGVA PSLHEEVREA EAGRLRTLER ENRELRGLLR ENSBTAP00000051339/1-1463 QRSLEPPPGS PGEELLPGVA PSLHDEVREA EAGRLQTLER ENQELRGLLR bmy_10877T0/1-1180 QRSLEPAPGS PGEAPLPGAA LSLQDEVREA EAGRLRTLER ENQELRGLLR BACU005331/1-1377 QRSLEPAPGS PGEAPLPGAA LSLHDEVREA EAGRLRTLER ENQELRGLLQ 551 600 ENSP00000349238/1-1476 VLQGQPGGQH PLLEAPREDP VLPVLEEAPQ TPVAFDHSPQ GLVQKARDGG ENSTTRP00000009780/1-1437 ALQGQPGGQH PLLEEPSEDS VIPEPDSAPQ TRLASDHGPQ GLAGQAGDEG ENSBTAP00000051339/1-1463 VLQRQPGGQP PLLEEQNEDS VIGEPDLAPQ TCLTSDPGPQ ALAAQAADEG bmy_10877T0/1-1180 VLQGQPGGQP PLLEEPSEDS VIPEPXSAPQ TRLASDHGPQ GLAGQAGDEG BACU005331/1-1377 VLQGRPGGQH PLLEEPSEDS VIPEPDSAPQ TRLASDHGPQ GLAGQAGDEG 601 650 ENSP00000349238/1-1476 PQALDLAPPA LDSVLEASAE CPQAPDSDPQ EAESPLQAAA MDPQASDWSP ENSTTRP00000009780/1-1437 PQALDPAPLA SDSALEGLAE CPQASDLDPK VVERPLQAAV TGL--ARW-- ENSBTAP00000051339/1-1463 SQASDPTPLL FESALEAS-- ---ASDLDPQ VVEKPLQTDV VVP--ADSMP bmy_10877T0/1-1180 PQALDPAPLA SDSALEGLAE CPQASDLDPK VVERPLQAAV MVP--VDTMX BACU005331/1-1377 PQVLDPAPLA SDSALEGLAE CPQASDLDPK VVERPLQAAV MAP--VDTMA 651 700 ENSP00000349238/1-1476 QESGSPVETQ ESPEKAGRRS SLQSPASVAP PQGPGTKIQA PQLLGGETEG ENSTTRP00000009780/1-1437 PKSGPAVGAQ ESLQKAGLGA PLQTPAAVAP PQGPDIKIEA QLSPGGET-- ENSBTAP00000051339/1-1463 QESDPDAEAQ EFPKKAGLGA PLRTPASVTP PQGPEVNIQA QLSLGGET-- bmy_10877T0/1-1180 QESGPAVEAQ ESLKKAGLGA PLQTPASVAP PQGPEIKIQA QLSLGGET-- BACU005331/1-1377 QESGPAVEAQ ESLKKAGLGA PLQTPASVAP PQGPEIKIQA QLLLGGET-- 701 750 ENSP00000349238/1-1476 REAPQGELVP EAWGLRQEGP EHKPGPSEPS -SVQLEEQEG PNQGLDLATG ENSTTRP00000009780/1-1437 -----GESVP EALGLRQEDP ESKPGLSEPS -SVQLEE--T LDQRLDLPKG ENSBTAP00000051339/1-1463 -----GESVP EALRVRQEDP ESKPGPSETS LCVRLEEQGT LDQKLDLPEG bmy_10877T0/1-1180 -----GELVP KALGLRQEDP ESKPGLSEPS LCGQLEEQET LDQRLDLPKG BACU005331/1-1377 -----GESVP EALGLRQEDP ESKPGLLEPS LCGRLEEQET LDQRLDLPKG 751 800 ENSP00000349238/1-1476 QAEAREHDQR LEGTVRDPAW QKPQQKSEGA LEVQVWEGPI PGESLASGVA ENSTTRP00000009780/1-1437 RAEAREHEQK LERMVGDPAQ QKPQQKLEGA PEAQTWEGRI PGEILSGGVP ENSBTAP00000051339/1-1463 QTEAREHEHR LGGLVGDATQ RKSQKKLEGA PEVRTWEARA PEEILVSGVP bmy_10877T0/1-1180 QAEAREHEQK LERMVGDPAQ QKPQQKLEGA PEAQTWEGRI PGEILASALP BACU005331/1-1377 QAEAREHEQK LERMVGDPAQ QKPQQKLEGA PEAQTWEGRI PGEILASGVP 801 850 ENSP00000349238/1-1476 EQEALREEVA QLRRKAEALG DELEAQARKL EAQNTEAARL SKELAQARRA ENSTTRP00000009780/1-1437 EQEALKEEMA RLRREAEALR AELEAQAWRL EARGTEAARL SEELAQARRA ENSBTAP00000051339/1-1463 EREALQEEAA RLKREAETLR AELEAQARRL EARGTEAARL SEELAQARRA bmy_10877T0/1-1180 PVD------- -----PPPLL CPLV---W-- ---------- ---------- BACU005331/1-1377 EQEALKEEMA RLRREAEALR AELEAQAWRL EARGTEAARL SEELAQARRA 851 900 ENSP00000349238/1-1476 EAEAHREAEA QAWEQARLRE AVEAAGQELE SASQEREALV EALAAAGRER ENSTTRP00000009780/1-1437 EAEAHREVEA QARELARLRE AVEAAGRELE AASRERGALA EVLAATGRER ENSBTAP00000051339/1-1463 EAEAHREVEA QARELARLRE AVESSARELE AASREREALA EALAAAGRER bmy_10877T0/1-1180 ---------- ---------- ---------- ---------- ---------- BACU005331/1-1377 EAEAH----- ---------- ---------- ---------- ---------- 901 950 ENSP00000349238/1-1476 RQWEREGSRL RAQSEAAEER MQVLESEGRQ HLEEAERERR EKEALQAELE ENSTTRP00000009780/1-1437 RQWEREAPRL RARAEAAEEQ LQVLQSESRR HLEEAERERR ERQALQEELE ENSBTAP00000051339/1-1463 RQWEREAPRL RARAEEAEER LHVLEAEGRR HLEEAETQRR ERQALQEELE bmy_10877T0/1-1180 ---------- ---------- ---------- ---------- ---------- BACU005331/1-1377 ---------- ---------- ---------- ---------- -----QEELE 951 1000 ENSP00000349238/1-1476 KAVVRGKELG DRLEHLQREL EQAALERQEF LREKESQHQR YQGLEQRLEA ENSTTRP00000009780/1-1437 KATARGQELG ARLEHLQREL ERATLEHQEF LREQEVQHQR YRGLEQRLEA ENSBTAP00000051339/1-1463 KAVVRGRELG ARLERLQNEL ERAALERQEF LREQEFQHQR YQGLEQRLEA bmy_10877T0/1-1180 --------LG S--------- ---------- ---------- ---------- BACU005331/1-1377 KATVRGQELG ARLEHLQSEL ERAALEHQGF LREQEFQHQR YQGLEQRLEA 1001 1050 ENSP00000349238/1-1476 ELQAAATSKE EALMELKTRA LQLEEELFQL RQGPAGLGPK KRAEPQLVET ENSTTRP00000009780/1-1437 ELQVAATSKE EALLALKTRA LQLEEELFQX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000051339/1-1463 ELQAAATSKE EALTELRKRA LQLEGELFKL RQGAAGLGPQ EQTELKGTEA bmy_10877T0/1-1180 ---------- ---------- -------LHF RGGLT----- ---------- BACU005331/1-1377 ELQVAATSKE EALMALKKRA LQLEQELFQL RQGAAGQGPE EQAEPRVTEA 1051 1100 ENSP00000349238/1-1476 QNVRLIEVER SNAMLVAEKA ALQGQLQHLE GQLGSLQGRA QELLLQSQRA ENSTTRP00000009780/1-1437 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000051339/1-1463 QSMRLIEVER SNATLAAEKA ALQGQLQHLE GQLGSLQGRA QELLLQSQRA bmy_10877T0/1-1180 ---------- ---------- ---------- --LGLIGGRE ---------- BACU005331/1-1377 QSARLIEVER SNATLAAEKA ALQGQLQHLE GQLGSLQGRA QELLLQSQRA 1101 1150 ENSP00000349238/1-1476 QEHSSRLQAE KSVLEIQGQE LHRKLEVLEE EVRAARQSQE ETRGQQQALL ENSTTRP00000009780/1-1437 XXXXXXXXAE KSVLELQGQE LHRKLGVLEE EVRAARRSQE ETRGQQQALL ENSBTAP00000051339/1-1463 QENSSRLQAE KSVLETQGQE LHRRLGLLEE EVQAARRSQE ETRGQQQALL bmy_10877T0/1-1180 ---------- ---------- ---------- ---------- ---------- BACU005331/1-1377 QEHSSCLQAE KSVLELQGQE LHRKLGVLEE EVQAARRSQE ETRGQQQALL 1151 1200 ENSP00000349238/1-1476 RDHKALAQLQ RRQEAELEGL LVRHRDLKAN MRALELAHRE LQGRHEQLQA ENSTTRP00000009780/1-1437 RDHEALAQLQ RRQEAELEGL LARHRDLKAN MRALELAHRE LQGRHEQLQA ENSBTAP00000051339/1-1463 RDHEALAQLQ RRQEAELEGL LARHRDLKAN MRALELAHRE LQGRHEQLQA bmy_10877T0/1-1180 ---------- ---------- ---------- ---------- ---RHEQLQA BACU005331/1-1377 RDHEALAQLQ RRQEAELEGL LARHRDLKAN MRALELAHRE LQGRHEQLQA 1201 1250 ENSP00000349238/1-1476 QRASVEAQEV ALLAERERLM QDGHRQRGLE EELRRLQSEH DRAQMLLAEL ENSTTRP00000009780/1-1437 QRAHVEAQEV ALLAERERLV QDGHRQRGLE EELRRLQSEH DRAQMLLAEV ENSBTAP00000051339/1-1463 QKANVEAQEV ALLAERERLV QDGHRQRGLE EELRRLQSEH DRAQMLLAEV bmy_10877T0/1-1180 QRAHVEAQEV ALLAERERLM QDGHRQRGLE EELRRLQSEH DRAQMLLAEV BACU005331/1-1377 QRAHVEAQEV ALLAERERLM QDGHRQRGLE EELRRLQSEH DRAQMLLAEV 1251 1300 ENSP00000349238/1-1476 SRERGELQGE RGELRGRLAR LELERAQLEM QSQQLRESNQ QLDLSACRLT ENSTTRP00000009780/1-1437 SQERGELQGE RGELRGRLAR LELERAQLEA QSLRLRESNQ QLDLSACRLA ENSBTAP00000051339/1-1463 SRERGELQGE RGELRGRLAR LELERAQLEA QSQRLRESNQ QLDLSACRLT bmy_10877T0/1-1180 SRERGELQGE RGELRGRLAR LELERAQLEA QSLRLRESNQ QLDLSACRLA BACU005331/1-1377 SRERGELQGE RGELRGRLAR LELERAQLEA QSLRLRESNQ QLDLSACRLA 1301 1350 ENSP00000349238/1-1476 TQCELLTQLR SAQEEENRQL LAEVQALSRE NRELLERSLE SRDHLHREQR ENSTTRP00000009780/1-1437 TQCELLTELR SAQEEENRQL LAEVQALSRE NRELLERSLE SRDHLHREQR ENSBTAP00000051339/1-1463 TQCELLTELR SAQEEENRQL LAEVQALSRE NRELLERSLE SRDHLHREQR bmy_10877T0/1-1180 TQCELLTELR SAQEEENRQL LAEVQALSRE NRELLERSLE SRDHLHREQR BACU005331/1-1377 TQCELLTELR SAQEEENRQL LAEVLALSRE NRELLERSLE SRDHLHREQR 1351 1400 ENSP00000349238/1-1476 EYLDQLNALR REKQKLVEKI MDQYRVLEPV PLPRTKKGSW LADKVKRLMR ENSTTRP00000009780/1-1437 EYLDQLNALR REKQKLVEKI MDQYRVLEPG PLPRTXXXXX XXXXXXXXXX ENSBTAP00000051339/1-1463 EYLDQLNALR REKQKLVEKI MDQYRVLEPG PLPRTKKGSW LADKVKRLMR bmy_10877T0/1-1180 EYLDQLNALR REKQKLVEKI MDQYRVLEPG PLPRTKKGSW LADKVKRLMR BACU005331/1-1377 EYLDQLNALR REKQKLVEKI MDQYRVLEPG PLPRTKKGSW LADKVKRLMR 1401 1450 ENSP00000349238/1-1476 PRREGGPPGG LRLGADGAGS TESLGGPPET ELPEGREADG TGSPSPAPMR ENSTTRP00000009780/1-1437 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXSPSPAPVR ENSBTAP00000051339/1-1463 PRREGGPHGG PRLGADGAGS TESLGGPSET ELPEGREADG TGSPSPAPMR bmy_10877T0/1-1180 PRREGGPHGG PRLGADGAGS TESLGGPPET ELSEGREADG TGSPSPAPMR BACU005331/1-1377 PRREGGPHGG PRLGADGAGS TESLGGPPET ELSEGREADG TGSPSPAPMR 1451 1500 ENSP00000349238/1-1476 RAQSSLCLRD ETLAGGQRRK LSSRFPVGRS SESFSPGDTP RQRFRQRHPG ENSTTRP00000009780/1-1437 RAQSSLCLRD ETLAGGQRRK LSSRFPVGRS SESFSPGDTP RQRFRQRRPG ENSBTAP00000051339/1-1463 RAQSSLCLRD ETLAGGQRRK LSSRFPVGRS SESFSPGDTP RQRFRQRRPG bmy_10877T0/1-1180 RAQSSLCLRD ETLAGGQRRK LSSRFPVGRS SESFSPGDTP RQRFRQRRPG BACU005331/1-1377 RAQSSLCLRD ETLAGGQRRK LSSRFPVGRS SESFSPGDTP RQRFRQRRPG 1501 1550 ENSP00000349238/1-1476 PLGAPVSHSK GPGVGWENSA ETLQEHETDA NREGPEVQEP EKRPLTPSLS ENSTTRP00000009780/1-1437 PLGAPSSHGK GPSVGWDGSV ETLAEREADA NREDVEVQES EKRALAPSLS ENSBTAP00000051339/1-1463 PLGAPSSHGK GPGVGWGGSI ETLAEHEADA NGESLEVQEP EKRTLAPSLS bmy_10877T0/1-1180 PLGAPSSHGK GPGVGWDGSV ETLAEREADA NREGVEVQES EKRALAPSLS BACU005331/1-1377 PLGAPSSHGK GPGVGWDGSF ETLAEREADA NREGVEVQES EKRALAPSLS 1551 1600 ENSP00000349238/1-1476 Q ENSTTRP00000009780/1-1437 Q ENSBTAP00000051339/1-1463 Q bmy_10877T0/1-1180 Q BACU005331/1-1377 Q