KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:58 2014 Check: 00 .. Name: ENSP00000320089/1-301 Len: 455 Check: 72 Weight: 1.00 Name: ENSBTAP00000051347/1-300 Len: 455 Check: 543 Weight: 1.00 Name: BACU001970/1-450 Len: 455 Check: 8591 Weight: 1.00 Name: bmy_00918T0/1-349 Len: 455 Check: 142 Weight: 1.00 Name: ENSTTRP00000011698/1-299 Len: 455 Check: 595 Weight: 1.00 // 1 50 ENSP00000320089/1-301 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051347/1-300 ---------- ---------- ---------- ---------- ---------- BACU001970/1-450 MGVRGFVTRP RSIGWEGWPR GRRSPGRWVS IVDLGSAESA ATKRKAQRAA bmy_00918T0/1-349 ---------- -------MAQ RKAQSGRWVS VVDLGSAESA ATKRKAQRAA ENSTTRP00000011698/1-299 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000320089/1-301 ---------- -------MLL SPVTSTPFSV KDILRLERER SCPAASPHPR ENSBTAP00000051347/1-300 ---------- -------MLL NPATCTPFSV NDILSLEREH LGPDALQLQR BACU001970/1-450 HCGDRGLPSP AP-SSFRMLL NPVTSTPFSV NDILRLEHEQ IGPEALQLRG bmy_00918T0/1-349 LCGDRGLPSP ASSSSFRMLL NPVTSTPFSV NDILRLEREQ IGPEALQLRG ENSTTRP00000011698/1-299 ---------- -------NLL KPVTSTPFSV KDI-RLEHEQ IGPETLQTQG 101 150 ENSP00000320089/1-301 VRKSPENFQY LRMDAEPRGS EVHNAGGGGG -DRKLDGSEP PGGPCEAVLE ENSBTAP00000051347/1-300 TPRSPENFQF LRPVPEQRGS EVPSIRSADG EDRRQEGSET SRGPCELVTE BACU001970/1-450 ARRSPESPQY LLPVPEQLGS EVPSAGSGDG -DRRQEGSES PKGLCETVTE bmy_00918T0/1-349 ARRSPESSQY LLPVPEQRGS EVPSTGSGDG -DRRQERSEP PEGPCETVTE ENSTTRP00000011698/1-299 ARESPESSQY LLPVPEQRGS EVPSTGSGDG -DRKQEGSEP PEGPCETVTE 151 200 ENSP00000320089/1-301 MDAERMGEPQ PGLNAASPLG GGTRVPERGV GNS-GDSVRG GRSEQPKARQ ENSBTAP00000051347/1-300 MDAKPVGEPE SVLSGASFPG GGTRVPERCA GDS-GGGARG DGAEHPIARP BACU001970/1-450 MDAEPVGEPQ SGLSAASPLC DGTRVQERDV GDR-GGGARG DGSEHPKGRP bmy_00918T0/1-349 MDAEPVGEPQ SGLSAASPPC DGTRVQERDV GDS-GGGARG DGSEHPKGRP ENSTTRP00000011698/1-299 MDAELVGEPQ SGLSAASHPC DGTRVQERDV GDSGGGGARG DGSEHPKGRP 201 250 ENSP00000320089/1-301 RRKPRVLFSQ AQVLALERRF KQQRYLSAPE REHLASALQL TSTQVKIWFQ ENSBTAP00000051347/1-300 RRKPRVLFSQ AQVLALERRF KQQRYLSAPE REHLASALQL TSTQVKIWFQ BACU001970/1-450 RRKPRVLFSQ AQVLALERRF KQQRYLSAPE REHLASALQL TSTQVKIWFQ bmy_00918T0/1-349 RRKPRVLFSQ AQVLALERRF KQQRYLSAPE REHLASALQL TSTQVKIWFQ ENSTTRP00000011698/1-299 RRKPRVLFSQ AQVLALERRF KQQRYLSAPE REHLASALQL TSTQVKIWFQ 251 300 ENSP00000320089/1-301 NRRYKCKRQR QDKSLELAGH PLTPRRVAVP VLVRDGKPCL GPGPGAPAFP ENSBTAP00000051347/1-300 NRRYKCKRQR QDKSLELAGH PLAPRRVAVP VLVRDGKPCL GPGP--PAFP BACU001970/1-450 NRRYKCKRQR QDKSLELAGH PLAPRRVAVP VLVRDGKPCL GPRT--PAFS bmy_00918T0/1-349 NRRYKCKRQR QDKSLELAGH PLAPRRVAVP VLVRDGKPCL GPRT--PAFS ENSTTRP00000011698/1-299 NRRYKCKRQR QDKSLELAGH PLAPRRVAVP VLVRDGKPCL GPRT--PAFS 301 350 ENSP00000320089/1-301 SPYSAAVSPY SCYGGYSGAP YGAGYGTCY- ----AGAPSG PAPHTPLASA ENSBTAP00000051347/1-300 GPYGAAAAPY SCYGHYAGAP YCAGYGGGY- ----AGAPPG PAPPVPQASS BACU001970/1-450 GPYGAAAAPY SCFGGYAGAA YSDRHFEAYM LDALPSLPPA PKQPQKRSRA bmy_00918T0/1-349 GPYGAAAEPY SCFGGYAGAA YSAPYGGGY- ----AGAPPG PAPPAPQASS ENSTTRP00000011698/1-299 GPYGAAAAPY SCFGGYAGAA YSAPYGGGY- ----AGAPPG PAPPVPQASS 351 400 ENSP00000320089/1-301 GFGHGGQ--- ---------- NATPQGHLAA TLQ----GVR AW-------- ENSBTAP00000051347/1-300 GFGTGGP--- ---------- SASPQSPLPA TLQ----GVR PG-------- BACU001970/1-450 AFSHTQVIEL ERKFSHQKYL SAPERAHLAK NLKLTETQVK IWFQNRRYKT bmy_00918T0/1-349 GFSGAGP--- ---------- SANPQGHLPA TLQ----GVR AW-------- ENSTTRP00000011698/1-299 GFSGGGP--- ---------- SANPQGHLPA ALQ----GVR AW-------- 401 450 ENSP00000320089/1-301 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051347/1-300 ---------- ---------- ---------- ---------- ---------- BACU001970/1-450 KRKQLTSDLG DLEKHPSLPA LKEEGFSRGS LISMQNTCPY YPYLYCLAGW bmy_00918T0/1-349 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011698/1-299 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000320089/1-301 ----- ENSBTAP00000051347/1-300 ----- BACU001970/1-450 SPAFW bmy_00918T0/1-349 ----- ENSTTRP00000011698/1-299 -----