KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:00:59 2014 Check: 00 .. Name: ENSP00000387535/1-623 Len: 712 Check: 3348 Weight: 1.00 Name: BACU002077/1-430 Len: 712 Check: 8498 Weight: 1.00 Name: ENSBTAP00000051361/1-622 Len: 712 Check: 5314 Weight: 1.00 Name: bmy_15978T0/1-617 Len: 712 Check: 4849 Weight: 1.00 Name: ENSTTRP00000014006/1-617 Len: 712 Check: 6546 Weight: 1.00 // 1 50 ENSP00000387535/1-623 ---------- ---------- ---------- ---------- ---------- BACU002077/1-430 MGGVLLCTGV RNDDVASLPC RTDLSLVRKC VRRSWRARAL APSLFKVRRP ENSBTAP00000051361/1-622 ---------- ---------- ---------- ---------- ---------- bmy_15978T0/1-617 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014006/1-617 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000387535/1-623 ---------- ---------- ---------- ------MPPP QGDVTALFLG BACU002077/1-430 WRSERPSAAL RRRCKGPCPR GYAFKTHPLL KGMTSAMPPP RGDVTVLFLG ENSBTAP00000051361/1-622 ---------- ---------- ---------- ------MPPP RGDVTVLFLG bmy_15978T0/1-617 ---------- ---------- ---------- ------MPPP RGDVTVLFLG ENSTTRP00000014006/1-617 ---------- ---------- ---------- ------MPPP RGDVTVLFLG 101 150 ENSP00000387535/1-623 PPGLGKSALI AALCDKDVET LEAPEGRPDS GVPSLRAAGP GLFLGELSCP BACU002077/1-430 PPGSGKSALI AALCDKDVET VEIPDGRPDS GLPSLRAAGP GLFLGELSCP ENSBTAP00000051361/1-622 PPGSGKSALI AALCDRDVET VEIPDGRPDS GLPSLRAAGP GLFLGELSCP bmy_15978T0/1-617 PPGSGKSALI AALCDKDVET VEIPDGRPDS GLPSLRAAGP GLFLGELSCP ENSTTRP00000014006/1-617 PPGSGKSAVI AALCDKDVET VEIPDGRPDS GLPSLRAAGP GLFLGELSCP 151 200 ENSP00000387535/1-623 PAAPGPWAAE ANVLVLVLPG PEGNGEPLAP ALGEAALAAL ARGTPLLAVR BACU002077/1-430 PAAPGPWAAE ANVLVLVLPG PEGNEEPLAP ALGEAARAAL ARGTPLLAVR ENSBTAP00000051361/1-622 PAEPGPWAAE ANVLVLVLPG PEGNEEPLAP ALGEAARAAL ARGTPLLAVR bmy_15978T0/1-617 PAAPGPWAAE ANVLVLVLPG PEGNEEPLAP ALGEAARAAL ARGTPLLAVR ENSTTRP00000014006/1-617 PAAPGPWAAE ANVLVLVLPG PEGSEEPLAP ALGEAARAAL ARGTPLLAVR 201 250 ENSP00000387535/1-623 NLRPGDSQTA AQARDQTAAL LNSAGLGAAD LFVLPANCGS SDGCEELERL BACU002077/1-430 NLRPEESQHV AQARDHTAAR LDSAGLGAVA LFVLQTDCRS SDGCEELERL ENSBTAP00000051361/1-622 NLRPEESQNE AQARDQTAAL LDSAGLGAAA LFVPRTDCLS TDGCEELERL bmy_15978T0/1-617 NLRPEESQHV AQARDHTAAR LDSAGLGAAA LFVLQTDCGS SDGCEELERL ENSTTRP00000014006/1-617 NLRPEESQNV AQARDQTAAR LDSAGLGAAT LFVLQTDCRS SDGCEELERL 251 300 ENSP00000387535/1-623 RAALQSQAEA LRRLLPPAQD GFEVLGAAEL EAVREAFETG GLEAALSWVR BACU002077/1-430 RAALRSQAEA LQRLLPPAQD GFEVLGAAEL EAVREAFETG GLEAALSWVR ENSBTAP00000051361/1-622 RAALRSQAEA LQRLLPPAQD GFEVLGAAEL EAVREAFETG GLEAALSWVR bmy_15978T0/1-617 RAALRSQAEA LQRLLPPAQD GFEVLGAAEL EAVREAFETG GLEAALSWVR ENSTTRP00000014006/1-617 RATLRSQAEA LQRLLPPAQD GFEVLGAAEL EAVREAFETG GLEAALSWVR 301 350 ENSP00000387535/1-623 SGLERLGSAR LDLAVAGKAD VGLVVDMLLG LDPGDPGAAP ASVPTAPTPF BACU002077/1-430 AGLERLGSAR LDLAVAGRAD VSLVLNMLLG LDSDDPGAVP ASAPAEPMPY ENSBTAP00000051361/1-622 AGLERLGSAR LDLAVAGRAD VGLVLNVLLG LDPEDPGAVP AAAPAGPTPY bmy_15978T0/1-617 AGLERLGSAR LDLAVAGRAD VSLVLNMLLG LDPDDPGAVP ASAPAEPMPY ENSTTRP00000014006/1-617 AGLERLGSAR LDLAVAGRAD VSLVLNMLLG LDPDDPGAVP ASAPAEPMPY 351 400 ENSP00000387535/1-623 PAPERPNVVL WTVPLGHTGT ATTAAAASHP -THYDALILV TPGAPTEKDW BACU002077/1-430 PAPERPNVVL WTVPLGSAGT ----AAAPHP -THYDA---- ---------X ENSBTAP00000051361/1-622 PTPERPNVVL WSVPLSSADT ----TVAPYP TTHYDALILV TPGAPTEKDW bmy_15978T0/1-617 PAPELPNVVL WTVPLGSAGT ----AAAPHP -THYDALILV TPGAPTEKDW ENSTTRP00000014006/1-617 PAPERPNVVL WTVPLGSAGT ----AAAPHP -THYDALILV TPGAPTEKDW 401 450 ENSP00000387535/1-623 AQVQALLLPD APLVCVRTDG EGEDPECLGE GKMENPKG-E SLKNAGGGGL BACU002077/1-430 XXXXXXXXXX XP-------- ---------- ---------- ---------- ENSBTAP00000051361/1-622 AQVRPLVLPD TPLVCVRTDG EGEDPESLEE EEKAEKSGSE SLENADGEGF bmy_15978T0/1-617 AQVRPLVLPD TPLVCVRTDG EGEDPESLDE EEKS---G-E SLENAGGGGF ENSTTRP00000014006/1-617 AQVRPLVLPD TPLVCVRTDG EGEDPESLDE EEKS---G-E SLENAGGGGF 451 500 ENSP00000387535/1-623 ENALSKGREK CSAGSQKAGS GEGPGKAGSE GLQQV-VGMK KSGGGDSERA BACU002077/1-430 ---------K SGP------- ---------- ---------- ---------- ENSBTAP00000051361/1-622 ENARSDGKEN RGPGLQKGGS GEGSEEAGTE SLQPVGVSTK KSGSGDSERA bmy_15978T0/1-617 ENARSEGREK RSPGSQKAVS REGSEDAGSE SLKPVGVGVK KPGSGDSERA ENSTTRP00000014006/1-617 ENARSEGREK RGPGSQKAGS GEGSEDAGSE SLQPVGVGVK KPGSGDSERA 501 550 ENSP00000387535/1-623 AALSPEDETW EVLEEAPPPV FPLRPGGLPG LCEWLRRALP PAQAGALLLA BACU002077/1-430 ---------W ---------- ---------- -CYQIRR--- ---------- ENSBTAP00000051361/1-622 AALSPEDETW EVLEEAPPPV FPLQPAGLPG LCEWLRRALP PAQAGALLLA bmy_15978T0/1-617 AALSPEDETW EVLEEAPPPV FPLRPGGLPG LCEWLRRALP PAQAGALLLA ENSTTRP00000014006/1-617 AALSPEDETW EVLEEAPPPV FPLRPGGLPG LCEWLRRALP PAQAGALLLA 551 600 ENSP00000387535/1-623 LPPASPSAAR TKAAALRAGA WRPALLASLA AAAAPLPGLG WACDVALLRG BACU002077/1-430 ---------- ---------- WS-------- ---------- -AC------- ENSBTAP00000051361/1-622 LPPASSRAAR TKAAALRAGA WRPALLASLA AAAAPVPGLG WACDVALLRG bmy_15978T0/1-617 LPPASPRAAQ TKAAALRAGA WRPALLASLA AAAAPVPGLG WACDVALLRG ENSTTRP00000014006/1-617 LPPASPRAAR TKAAALRAGA WRPALLASLA AAAAPVPGLG WACDVALLRG 601 650 ENSP00000387535/1-623 QLAEWRRGLG LEPTALARRE RALGLASGEL AARAHFPGPV TRAEVEARLG BACU002077/1-430 ---------- ---------- --------EQ TARARIRSPW TKRKRAARA- ENSBTAP00000051361/1-622 QLAEWRRALG LEPAALARRE RALGLAPGEL AKRTHFPGPV TPAEVEARLG bmy_15978T0/1-617 QLAEWRRALG LEPAALARRE RALGLAPGEL AERTRFPGPV TRAEVEARLG ENSTTRP00000014006/1-617 QLAEWRRALG LEPAALARRE RALGLTPGEL AERTRFPGPV TRAEVEARLG 651 700 ENSP00000387535/1-623 AWAGEGTAGG AALGALSFLW PAGGAAATGG LGYRAAHGVL LQALDEMRAD BACU002077/1-430 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051361/1-622 SWAGERTAGG AALGALSFLW PAGGAAATGG LGYRAAHGVL LQALDEMCAD bmy_15978T0/1-617 SWAGEGTAGG AALSALSFLW PAGGAAATGG LGYRAAHGVL LQALDEMRAD ENSTTRP00000014006/1-617 SWAGEGTAGG AALGALSFLW PAGGAAATGG LGYRAAHGVL LQALDEMRAD 701 750 ENSP00000387535/1-623 AEAVLAPPEP AQ BACU002077/1-430 ---------- -- ENSBTAP00000051361/1-622 AEAVLAPQVP AQ bmy_15978T0/1-617 AEAVLAPQVP AQ ENSTTRP00000014006/1-617 AEAVLAPQVP AQ