KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:02 2014 Check: 00 .. Name: ENSP00000455265/1-869 Len: 960 Check: 2428 Weight: 1.00 Name: ENSBTAP00000051454/1-893 Len: 960 Check: 5889 Weight: 1.00 Name: ENSTTRP00000001938/1-851 Len: 960 Check: 2528 Weight: 1.00 Name: bmy_21381T0/1-815 Len: 960 Check: 136 Weight: 1.00 Name: BACU009705/1-706 Len: 960 Check: 177 Weight: 1.00 // 1 50 ENSP00000455265/1-869 ----MDFPSS LRPALFLTGP LGLSDVPDLS FMCSWRDALT LPEAQPQNSE ENSBTAP00000051454/1-893 ----MDFPSS LPPSLFMTGP LGQSDVPDLS FMCSWRDALT LPASSPQGSQ ENSTTRP00000001938/1-851 ----MDFPSS LPPSLFTTGP LGLSDVPDVS FMCSWRDALT LPESLPQGSE bmy_21381T0/1-815 ----MDFPSS LPPSLFTTGP LGLSDVPDVS FMCSWRDALT LPESLPQGPE BACU009705/1-706 MAVKVTMAVE VTMAVKVTMA VEVTMAVEVT MAVKVTMAV- VPNAVP---- 51 100 ENSP00000455265/1-869 NGALHVTKDL LWEPATPG-- --PLPMLPPL IDPWDPGLTA RDLLFRGGCR ENSBTAP00000051454/1-893 DSAPHVAKAL LWEPDMPG-- --PLPLLPPG PDPWDPGLTA KDLLFRGGYQ ENSTTRP00000001938/1-851 NTAPHVAKGL LWEPDTPG-- --PLPLLPPG ADPWDPGVTA QDLLFRGGYQ bmy_21381T0/1-815 -GPRHL---- -QAPRTPGSI SGPFRSLTLP SDPWDPGVTA QDLLFRGGYQ BACU009705/1-706 ----HVAKGL LWEPDTPG-- --PLPLLPPG PDPWDPGVTA QDLLFRGGYQ 101 150 ENSP00000455265/1-869 YRKRPRVVLD VTEQISRFLL DHGDVAFAPL GKLMLENFKL EGAGSRTKKK ENSBTAP00000051454/1-893 FRRHPRAVLD VTEQISRFLW NHGDIAFAPL GRLLLENFKL EGAHSRSKTK ENSTTRP00000001938/1-851 FRRQPQAVLD VTEQLSRFLW DHGDIAFAPL GKLMLENFKL EGARSRSKKK bmy_21381T0/1-815 FRRQPQAVLD VTEQLSRFLW DHGDIAFAPL GKLMLENFKL EGARGRSKKK BACU009705/1-706 FRRQPQAVLD VTEQLSRFLW DHGDIAFAPL GKLMLENFKL EGARGRSKKK 151 200 ENSP00000455265/1-869 TVVSVKKLLQ DLGGHQPWG- ---------C PWAYLSNRQR RFSILGGPIL ENSBTAP00000051454/1-893 TVVSVKRLHQ DLGGHQPWG- ---------C PWAYLSQRQR RFSILGAPIL ENSTTRP00000001938/1-851 TVVSVKRLLQ DLGGHQPWG- ---------C PWAYLSHRQR RFSILGGPIL bmy_21381T0/1-815 TVVSVKRLLQ DLGGHQPWGQ VASETGQDGC PWAYLSHRQR RFSILGGPIL BACU009705/1-706 TVVSVKRLLQ DLGGHQPWGQ VASGTGRGGC PWAYLSHRQR RFSILGGPIL 201 250 ENSP00000455265/1-869 GTSVASHLAE LLHEELVLRW EQLLLDEACT GGALAWVPGR TPQFGQLVYP ENSBTAP00000051454/1-893 STSVASLLGE LLHEELALRW ERLLLDDACT GGALAWVPGR TPGAGQLVYP ENSTTRP00000001938/1-851 STSVASLLGE LLHEELALRW EQLLLDDAFT GGALAWVPGR TPGAGQLVYP bmy_21381T0/1-815 STSVASLLGE LLHEELALRW EQLLLDDAFT GGALAWVPSR TPRAGQLVYP BACU009705/1-706 STSVASLLGE LLHEELALRW EQLLLDDAFT GGALAWVPGR TPRAGQLVYP 251 300 ENSP00000455265/1-869 AGGAQDRLH- ---FQEVVLT PGDNPQFLGK PGRIQLQGPV RQVVTCTVQG ENSBTAP00000051454/1-893 VGGAMDTLC- ---FQKVSLT PESEPQVLSD PGRIQLRGPV RQVVTRSVQG ENSTTRP00000001938/1-851 AGGALDRLY- ---FQKVNLT PGSEPWVLGD PGHIRLRGPV RQVVTRTVQG bmy_21381T0/1-815 AGGALDRLSR CPDFQKVSLI PGSEPRVLGG PGHIQLRGPV RQVVTRTVQG BACU009705/1-706 AGGALDRLSR CPDFQKVSLT PGSEPRVLGG PGHIRLRGPV RQVVTRTVQG 301 350 ENSP00000455265/1-869 ESKALIYTFL PHWLTCYLTP GPFHPSSALL AVRSDYHCAV WKFGKQWQPT ENSBTAP00000051454/1-893 E--------- ---------- -------ALL AVRSDHHCGL WKVSTQGQPA ENSTTRP00000001938/1-851 EGKA-IDTSP VHSLTCCLTP DPLHP-SALL AVRSDYHCAL WKVSKQGQPA bmy_21381T0/1-815 E--------- ---------- -------ALL AVRSDYHCAL WKVSKQGQPA BACU009705/1-706 E--------- ---------- -------ALL AVRSDYHCAL WKVSKQGQPA 351 400 ENSP00000455265/1-869 LLQAMQVEKG ATGISLSPHL PGELAICSRS GAVCLWSPED GLRQIYRDPE ENSBTAP00000051454/1-893 PLQVLQVDKG ATGISLSPHL PGELVICSRS GVVCLWSAED GLRQIYKDPE ENSTTRP00000001938/1-851 PLQVLQVEKG ATGISLSPHL PGELAICSRS GAICLWTPQD GLQQIYKDPE bmy_21381T0/1-815 PLQVLQVEKG ATGISLR--- ---------- ---------- -LRQIYKDPE BACU009705/1-706 PLQVLQVEKG ATGISLR--- ---------- ---------- -LQQIYKDPE 401 450 ENSP00000455265/1-869 TLVFRDSSSW RWADFTAHPR VLTVGDRTGV KMLDTQGPPG CGLLLFRLGA ENSBTAP00000051454/1-893 TLVFRDPSSW RWADFTAHPR VLTVGDRTGV KMVDTQGPPG CGLLLFRGGA ENSTTRP00000001938/1-851 TLVFRDPSPW RWADFTAHPR VLTVGDRTGV KMVDTQGPQG CGLLLFRGGA bmy_21381T0/1-815 TLVFRDPSPW RWADFTAHPR VLTVGDRTGV KMVDTQGPPG CGLLLFRGGA BACU009705/1-706 TLVFRDPSPW RWADFTAHPR VLTVGDRTGV KMVDTQGPPG CGLLLFRGGA 451 500 ENSP00000455265/1-869 EASCQKGERV LLTQYLGHSS PKCLPPTLHL VCTQFSLYLV DERLPLVPML ENSBTAP00000051454/1-893 EASCQKGERV LLTQHLGDLG PESLHPMLHL ICTQFSLYLV DERLPLVPLL ENSTTRP00000001938/1-851 EASCQKGERV LLTQYLGECG PECLHPTLHL ICTQFSLYLV DERLPLVPLL bmy_21381T0/1-815 EASCQKGERV LLTQYLGECG PECLHPTLHL ICTQFSLYLV DERLPLVPLL BACU009705/1-706 EASCQKGERV LLTQYLGECG PECLHPTLHL ICTQVSDTF- ---------- 501 550 ENSP00000455265/1-869 KWNHGLPSPL LLARLLPPPR PSCVQPLLLG GQGGQLQLLH LAGEGASVPR ENSBTAP00000051454/1-893 KWNHGLRSAP LLARLLPPPR PGLPQPLLLA SQGGELQLLH LAGVGASTPR ENSTTRP00000001938/1-851 KWNHGLPSAP LLARLLPPPR TGLPRPLLLA GQGGELQLLH IA-EGTSTPR bmy_21381T0/1-815 KWNHGLPSAP LLARLLPPPR TGLPRPLLLA GQGGELQLLH IAGEGASTPR BACU009705/1-706 ---------- -------PSS PSCT----VS G--------- --GEGASTPR 551 600 ENSP00000455265/1-869 LAGPPQSLPS RIDSLPAFPL LEPKIQ--WR LQERLKAPTI GLAAVVPPLP ENSBTAP00000051454/1-893 LVGLPQSLPT RSDSLSAFPL LEPKSH--RR LQERLKAPTV GLAAAIP--P ENSTTRP00000001938/1-851 LTRSPQFSSS WSDSLSAFPX XXXXXXXXXX XXXXXXXXXX XXXXXXX--X bmy_21381T0/1-815 LAGPPQSLPS RSDSLSAFPL LEPKSQ--WR LQERLKAPAI GLATAIP--P BACU009705/1-706 LAGPPQSLPS RSDSLSAFPL LEPKSQ--WR LQGGLKAPAI GLAAAIP--P 601 650 ENSP00000455265/1-869 SAPTPGLVLF QLSAAGDVFY QQLRPQVDSS LRRDAGPPGD TQPDCHAPTA ENSBTAP00000051454/1-893 PASTPVLSLF QLSAAGDVFH QRLHLR---- --------AD PGPNARAPAA ENSTTRP00000001938/1-851 XXXXXXXXXX XXXAAGDVFH QGLHLQ---- --------AD PGPDSSAPTA bmy_21381T0/1-815 SASTPVLSLF QLSAAGDVFH QHLHLQ---- --------GE AGPDSPAPTA BACU009705/1-706 SASTPVLSLF QLSAAGDVFH QRLHLQ---- --------GE PGPDSPAPTA 651 700 ENSP00000455265/1-869 SWTSQDTAGC SQWLKALLKV PLAPPVWTAP TFTHRQMLGS TELRREEEEG ENSBTAP00000051454/1-893 SWTPQATACC SRWLEALLEV PLTPPVWAAP TFSHRRLLGG FEPQK--VEG ENSTTRP00000001938/1-851 SWTPQATASC SRWLKALLEV PPAPPVWAAP TFSHRRLLGC FEPQK--AEG bmy_21381T0/1-815 SWTPQATASC SRWLKALLEV PPAPPVWAAP TFSHRRLLGC FEPQK--AEG BACU009705/1-706 SWTPQATASC SRWLKALL-- ---------- ---------- ---------- 701 750 ENSP00000455265/1-869 QRLGVLRKAM ARGQLLLQRD LGSLPAAEPP PAPESGLEDK LSERLGEAWA ENSBTAP00000051454/1-893 PVPEGFRRAM AQGRLLQRRD LGLLPTEERP PAPEPGPEDE LSERLEAAWE ENSTTRP00000001938/1-851 KA-QRLRTAM AKGRLLQLRD LGLLPTEERA PAPEPGPEDE LSERLEAAWE bmy_21381T0/1-815 KAPEGLRMAM AKGRLLQPRD LGLLPTEERA PAPEPGPEDE LSERLEAAWE BACU009705/1-706 ---------- ---------- ---------- ---EPGPEDE LSERLEAAWE 751 800 ENSP00000455265/1-869 GRGAAWWERQ QGRTSEPGRQ TRRPKRRTQL SSSF-SLSGH VDPSEDTSSP ENSBTAP00000051454/1-893 FGAAAWWERQ RGSRAGPGKQ PKRHKRRTQL SSTFSSLSGR VDLSDAASPA ENSTTRP00000001938/1-851 GQAAAWWERR RGSSLGPGKQ PKRHKRRTQL SNTFSSLSGR LDLSDAASPP bmy_21381T0/1-815 GQAAAWWERR RGSGSGPGKQ PKRHKRRTQL SSTFSSLSGR LDLSDAASPP BACU009705/1-706 GQAAAWWERR RGSGSGPGKQ PKRHKRRTQL SSTFSSLSGR LDLSDAASPP 801 850 ENSP00000455265/1-869 HSPEWPPADA LPLPPTTPPS QELTPDACAQ GVPSEQRQML RDYMAKLPPQ ENSBTAP00000051454/1-893 PSPDHTLPEA RPQPPRTPPS QELTQEPWAQ GVPSERQQTL RDYMAELPLR ENSTTRP00000001938/1-851 PSPERTLPAA RPQPPVTPPS QESTQELWAR AVPSERQQTL RDYMAELPLR bmy_21381T0/1-815 PSPERTLPEA RPQPPVTPPS QESTQELWAR GVPSERQQTL RDYMAELPLR BACU009705/1-706 PSPERTLPEA RPQPPVTPPS QESTQELWAR GVPSERQQTL RDYMAELPLG 851 900 ENSP00000455265/1-869 RDTPGCATTP PHSQASSVRA TRSQQHTP-- ---------- ---------- ENSBTAP00000051454/1-893 TDTPGGASVL S-SQTPSVRA TPSRQHAPQD CTVQQLPRGD TPEGTTLLSS ENSTTRP00000001938/1-851 GDAPGGASVP S-SQTSSVRA TPSRQRAA-- ---------- ---------- bmy_21381T0/1-815 GDAPGAASVP S-SQTSSVRA TPSRQRAA-- ---------- ---------- BACU009705/1-706 GDAPGAASVP S-SQASSVRA TPSRQRAA-- ---------- ---------- 901 950 ENSP00000455265/1-869 ---------- ---------- ---------- ---------- ----VLSSSQ ENSBTAP00000051454/1-893 QTPSVRATPS RPHTPRDGIV QQLPRGDTPE GATPPSSQTP SFLATRSGSQ ENSTTRP00000001938/1-851 ---------- ---------- ---------- ---------- ----VRSGSQ bmy_21381T0/1-815 ---------- ---------- ---------- ---------- ----VRSGSQ BACU009705/1-706 ---------- ---------- ---------- ---------- ----VRSGSQ 951 1000 ENSP00000455265/1-869 PLRKKPRMGF ENSBTAP00000051454/1-893 RLRKKPRMGF ENSTTRP00000001938/1-851 PHCKKPRMGF bmy_21381T0/1-815 PHWKKPRMGF BACU009705/1-706 PHCKKPRMGF