KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:01:03 2014 Check: 00 .. Name: ENSBTAP00000051460/1-520 Len: 625 Check: 6505 Weight: 1.00 Name: ENSTTRP00000015102/1-510 Len: 625 Check: 9799 Weight: 1.00 Name: bmy_11838T0/1-479 Len: 625 Check: 3727 Weight: 1.00 Name: BACU012446/1-510 Len: 625 Check: 9790 Weight: 1.00 // 1 50 ENSBTAP00000051460/1-520 MAQQRQHQRL PMDPLCTASS GPRKKRPRQV GASMASPPHD IKFQNLVLFI ENSTTRP00000015102/1-510 ---------- -MDPLHVAPS GPRKKRPRQL GASMASPSYD IKFGDLVLFI bmy_11838T0/1-479 ---------- -MDPLHVAPS GPRKKRPRQV GASMASPSYD IKFRDLVLFI BACU012446/1-510 ---------- -MDPLHVAPS GPRKKRPRQV GASMASPSYD IKFRDLVLFI 51 100 ENSBTAP00000051460/1-520 LEKKMGTTRR NFLMELARRK GFRVENEL-- ---------- ---------- ENSTTRP00000015102/1-510 LEKKMGTTRR TFLMELARRK GFRVENEL-- ---------- ---------- bmy_11838T0/1-479 LEKKMGTTRR TFLMELARRK GFRVENELRN PCFPPPTEEV TLPLGEQMRY BACU012446/1-510 LEKKMGTTRR TFLMELARRK GFRVENEL-- ---------- ---------- 101 150 ENSBTAP00000051460/1-520 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015102/1-510 ---------- ---------- ---------- ---------- ---------- bmy_11838T0/1-479 LGMINRNLVG KFNDETIRQE LTSLVTGTAT NMHTVAEAGT RRDAGRQASS BACU012446/1-510 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000051460/1-520 ---------- ---------- ---------- --SDSVTHIV AENNSGSEVL ENSTTRP00000015102/1-510 ---------- ---------- ---------- --SDSVTHIV AENNSGSEVL bmy_11838T0/1-479 FDKRAQQAAL LPGTEPSCSG DRGNWRTLLN EQGDSVTHIV AENNSGSEVL BACU012446/1-510 ---------- ---------- ---------- --SDSVTHIV AENNSGSEVL 201 250 ENSBTAP00000051460/1-520 EWLQVQNIRA SSQLELLDVS WLIESMGAGK PVEITGKHQL VVRTDYSATP ENSTTRP00000015102/1-510 DWLQVQNVRA SSQLELLDVS WLIESMGAGK PVEITGKHQL VVRTDYSATP bmy_11838T0/1-479 DWLQVQNVRA SSQLELLDIS WLIESMGAGK P--------- -VRTDYSATP BACU012446/1-510 DWLQVQNVRA SSQLELLDVS WLIESMGAGK PVEITGKHQL VVRTDYSATP 251 300 ENSBTAP00000051460/1-520 NPGFQKTPPL AVKKISQYAC QRKTTLNNYN HIFTDAFEIL AENSEFKENE ENSTTRP00000015102/1-510 NPGFQKTPPL AVKKISQYAC QRRTTLNNRN HTFTDAFEVL AENYEFKENE bmy_11838T0/1-479 NPGFQKTPPL AVKKISQYAC QRRTTLNNWN HIFTDAFEVL AENYEFKENE BACU012446/1-510 NPGFQKTPPL AVKKISQYAC QRRTTLNNWN HIFTDAFEVL AENYEFKENE 301 350 ENSBTAP00000051460/1-520 VSYVTFMRAA SVLKSLPFTI ISMKDTEGIP CLGDKVKCII EEIIEDGESS ENSTTRP00000015102/1-510 VFCVEFTRAA SVLKSLPFTI ISMRDTEGIP CLGDRVKCVM EEIIEDGESS bmy_11838T0/1-479 VSCLEFMRAA SVLKSLPFTI ISMKDTEGIP CLGDKVKCVI EEIIEDGESS BACU012446/1-510 ISCLEFMRAA SVLKSLPFTI ISMKDTEGIP CLGDKVKYVI EEIIEDGESS 351 400 ENSBTAP00000051460/1-520 EVKAVLNDER YQSFKLFTSV FGVGLKTSEK WFRMGFRSLS KIMSDKTLKF ENSTTRP00000015102/1-510 EVKAVLNDER YQSFKLFTSV FGVGLKTSEK WFRMGFRSLS KIRSDKTLKF bmy_11838T0/1-479 EVKAVLNDER YQSFKLFTSV FGVGLKTSEK WFRMGFRSLS KIRSDKTLKF BACU012446/1-510 EVKAVLNDER YQSFKLFTSV FGVGLKTSEK WFRMGFRSLS KIRSDKTLKF 401 450 ENSBTAP00000051460/1-520 TKMQKAGFLY YEDLVSCVTR AEAEAVGVLV KEAVWAFLPD AFVTMTGGFR ENSTTRP00000015102/1-510 TRMQKAGFLY YEDLVSCVTR AEAEAVGVLV KEAVWAFMPD AFVTMTGGFR bmy_11838T0/1-479 TRMQKAGFLY YEDLVSRVTR AEAEAVSVLV KEAVWAFMPD AF-------- BACU012446/1-510 TRMQKAGFLY YEDLVSRVTR AEAEAVSVLV QEAVWAFMPD AFVTMTGGFR 451 500 ENSBTAP00000051460/1-520 RGKKIGHDVD FLITSPGSAE DEE-QLLPKV INLWEKKGLL LYYDLVESTF ENSTTRP00000015102/1-510 RRKKTGHDVD FLITSPGSTE DEEQQLLPKV INLWERKXXX XXXXXXXXXX bmy_11838T0/1-479 ---KTGHDVD FLITSPGSTE DEEQQLLPKV INLWERKA-- ---------- BACU012446/1-510 RCKKTGHDVD FLITSPGSTE DEEQQLLPKV MNLWERKGLL LYYDLVESTF 501 550 ENSBTAP00000051460/1-520 EKFKLPSRQV DTLDHFQKCF LILKLHHQRV DSSKSNQQEG KTWKAIRVDL ENSTTRP00000015102/1-510 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_11838T0/1-479 ---------- ----HSSTC- ----LHDTRI YT-------- ---------- BACU012446/1-510 EKFKVPSRQV DTLDHFQKCF LILKLHHQRV DSDTSIQEEG KTWKAIRVDL 551 600 ENSBTAP00000051460/1-520 VMCPYENRAF ALLGWTGSRQ FERDIRRYAT HERKMMLDNH ALYDKTKRVF ENSTTRP00000015102/1-510 XXXXXXXXXX XXXXXXXXXQ FERDLRRYAT HDRKMVLDNH ALYDKTKRMF bmy_11838T0/1-479 ---------- ---------- ---------- ---------- --YD------ BACU012446/1-510 VMCPYEQHAF ALLGWTGSRQ FERDLRRYAT HDRKMILDNH ALYDKTKRIF 601 650 ENSBTAP00000051460/1-520 LKAESEEEIF AHLGLDYIEP WERNA ENSTTRP00000015102/1-510 LKAGSEEEIF AHLGLDYIEP WERNA bmy_11838T0/1-479 --------VL KHL------- --QNE BACU012446/1-510 LKAESEEEIF AHLGLDYLEP WERNA