KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:04 2014 Check: 00 .. Name: ENSP00000358799/1-977 Len: 1034 Check: 8018 Weight: 1.00 Name: ENSBTAP00000051477/1-914 Len: 1034 Check: 7838 Weight: 1.00 Name: ENSTTRP00000001236/1-975 Len: 1034 Check: 4683 Weight: 1.00 Name: BACU002724/1-990 Len: 1034 Check: 1028 Weight: 1.00 Name: bmy_11930T0/1-958 Len: 1034 Check: 8557 Weight: 1.00 // 1 50 ENSP00000358799/1-977 MRTAGRDPVP RRSPRWRRAV PLCETSAGRR VTQLRGDDLR RPATMKGKER ENSBTAP00000051477/1-914 ---------- ---------- ---------- ---------- ----MKGKER ENSTTRP00000001236/1-975 MKTAGREPLP RRSPRWRRAV PLCETSAGRR VSQFRGEDLR RPATMKGKER BACU002724/1-990 ---------- ---------- ---------- ---------- ----MKGKER bmy_11930T0/1-958 MKTVGRDPLP RRSPRWRRAV PLCETSAGRR VNQFRGEDLR RPATMKGKER 51 100 ENSP00000358799/1-977 SPVKAKRSRG GEDSTSRGER SKKLGGSGGS NGSSSGKTDS GGGSRRSLHL ENSBTAP00000051477/1-914 SPVKPKRSRG GEDSTSRGER SKKLGGSGGS NGSSSGKTDG GGGSRRSLHL ENSTTRP00000001236/1-975 SPVKPKRSRG GEDSTPRGER SKKLGGSGGS NGSSSGKTDG GGGSRRSLHL BACU002724/1-990 SPVKPKRSRG GEDSTSRGER SKKLGGSGGS NGSSSGKTDG GGGSRRSLHL bmy_11930T0/1-958 SPVKPKRSRG GEDSTSRGER SKKLGGSGGS NGSSSGKTDG GGGSRRSLHL 101 150 ENSP00000358799/1-977 DKSSSRGGSR EYDTGGGSSS SRLHSYSSPS TKNSSGGGES RSSSRGGGGE ENSBTAP00000051477/1-914 DKSSSRGGSR EYDTGGGSSS SRLHSYSSPS TKNSSGGGES RSSSRGGGGE ENSTTRP00000001236/1-975 DKSSSRGGSR EYDTGGGSSS SRLHSYSSPS TKNSSGGGES RSSSRGGGGE BACU002724/1-990 DKSSSRGGSR EYDTGGGSSS SRLHSYSSPS TKNSSGGGES RSSSRGGGGE bmy_11930T0/1-958 DKSSSRGGSR EYDTGGGSSS SRLHSYSSPS TKNSSGGGES RSSSRGGGGE 151 200 ENSP00000358799/1-977 SRSSGAASSA PGGGDGAEYK TLKISELGSQ LSDEAVEDGL FHEFKRFGDV ENSBTAP00000051477/1-914 SRSSGAASSA PGGGDGGEYK TLKISELGSQ LSDEAVEDGL FHEFKRFGDV ENSTTRP00000001236/1-975 SRSSGAASSA PGGGDGGEYK TLKISELGSQ LSDEAVEDGL FHEFKRFGDV BACU002724/1-990 SRSSGAASSA PGGGDGGEYK TLKISELGSQ LSDEAVEDGL FHEFKRFGDV bmy_11930T0/1-958 SRSSGAASSA PGGGDGGEYK TLKISELGSQ LSDEAVEDGL FHEFKRFGDV 201 250 ENSP00000358799/1-977 SVKISHLSGS GSGDERVAFV NFRRPEDARA AKHARGRLVL YDRPLKIEAV ENSBTAP00000051477/1-914 SVKISHLSGS GSGDERVAFV NFRRPEDARA AKHARGRLVL YDRPLKIEAV ENSTTRP00000001236/1-975 SVKISHLSGS GSGDERVAFV NFRRPEDARA AKHARGRLVL YDRPLKIEAV BACU002724/1-990 SVKISHLSGS GSGDERVAFV NFRRPEDARA AKHARGRLVL YDRPLKIEAV bmy_11930T0/1-958 SVKISHLSGS GSGDERVAFV NFRRPEDARA AKHARGRLVL YDRPLKIEAV 251 300 ENSP00000358799/1-977 YVSRRRSRSP LDKDTYPPSA SVVGASVGGH RHPP-GGGGG QRSLSPGGAA ENSBTAP00000051477/1-914 YVSRRRSRSP LDKDSYPPSA SVVGSSVSGH RHPPGGGGGG QRSLSPGGAA ENSTTRP00000001236/1-975 YVSRRRSRSP LDKDSYPPSA SVVGSSVGGH RHPPGGGGGG QRSLSPGGAA BACU002724/1-990 YVSRRRSRSP LDKDSYPPSA SVVGSSVGGH RHPPGGGGGG QRSLSPGGAA bmy_11930T0/1-958 YVSRRRSRSP LDKDSYPPSA SVVGSSVGGH RHPPGGGGGG QRSLSPGGAA 301 350 ENSP00000358799/1-977 LGYRDYRLQQ LALGRLPPPP PPPLPRDLER ERDYPFYERV RPAYSLEPRV ENSBTAP00000051477/1-914 LGYRDYRLQQ LALGRLPPPP PPPLPRDLER ERDYSFYERV RPAYSLEPRV ENSTTRP00000001236/1-975 LGYRDYRLQQ LALGRLPPPP PPPLPRDLER ERDYSFYERV RPAYSLEPRV BACU002724/1-990 LGYRDYRLQQ LALGRLPPPP PPPLPRDLER ERDYSFYERV RPAYSLEPRV bmy_11930T0/1-958 LGYRDYRLQQ LALGRLPPPP PPPLPRDLER ERDYSFYERV RPAYSLEPRV 351 400 ENSP00000358799/1-977 GAGAGAAPFR EVDEISPEDD QRANRTLFLG NLDITVTESD LRRAFDRFGV ENSBTAP00000051477/1-914 GTGAGAAPFR EVDEISPEDD QRANRTLFLG NLDITVTESD LRRAFDRFGV ENSTTRP00000001236/1-975 GAGAGAAPFR EVDEISPEDD QRANRTLFLG NLDITVTESD LRRAFDRFGV BACU002724/1-990 GAGAGAAPFR EVDEISPEDD QRANRTLFLG NLDITVTESD LRRAFDRFGV bmy_11930T0/1-958 GAGAGAAPFR EVDEISPEDD QRANRTLFLG NLDITVTESD LRRAFDRFGV 401 450 ENSP00000358799/1-977 ITEVDIKRPS RGQTSTYGFL KFENLDMSHR AKLAMSGKII IRNPIKIGYG ENSBTAP00000051477/1-914 ITEVDIKRPS RGQTSTYGFL KFENLDMSHR AKLAMSGKII IRNPIKIGYG ENSTTRP00000001236/1-975 ITEVDIKRPS RGQTSTYGFL KFENLDMSHR AKLAMSGKII IRNPIKIGYG BACU002724/1-990 ITEVDIKRPS RGQTSTYGFL KFENLDMSHR AKLAMSGKII IRNPIKIGYG bmy_11930T0/1-958 ITEVDIKRPS RGQTSTYGFL KFENLDMSHR AKLAMSGKII IRNPIKIGYG 451 500 ENSP00000358799/1-977 KATPTTRLWV GGLGPWVPLA ALAREFDRFG TIRTIDYRKG DSWAYIQYES ENSBTAP00000051477/1-914 KATPTTRLWV GGLGPWVPLA ALAREFDRFG TIRTIDYRKG DSWAYIQYES ENSTTRP00000001236/1-975 KATPTTRLWV GGLGPWVPLA ALAREFDRFG TIRTIDYRKG DSWAYIQYES BACU002724/1-990 KATPTTRLWV GGLGPWVPLA ALAREFDRFG TIRTIDYRKG DSWAYIQYES bmy_11930T0/1-958 KATPTTRLWV GGLGPWVPLA ALAREFDRFG TIRTIDYRKG DSWAYIQYES 501 550 ENSP00000358799/1-977 LDAAHAAWTH MRGFPLGGPD RRLRVDFADT EHRYQQQYLQ PLPLTHYELV ENSBTAP00000051477/1-914 LDAAHAAWTH MRGFPLGGPD RRLRVDFADT EHRYQQQYLQ PLPLTHYELV ENSTTRP00000001236/1-975 LDAAHAAWTH MRGFPLGGPD RRLRVDFADT EHRYQQQYLQ PLPLTHYELV BACU002724/1-990 LDAAHAAWTH MRGFPLGGPD RRLRVDFADT EHRYQQQYLQ PLPLTHYELV bmy_11930T0/1-958 LDAAHAAWTH MRGFPLGGPD RRLRVDFADT EHRYQQQYLQ PLPLTHYELV 551 600 ENSP00000358799/1-977 TDAFGHRAPD PLRGARDRTP PLLYRDRDRD LYPDSDWVPP PPPVRERSTR ENSBTAP00000051477/1-914 TDAFGHRAPD PLRGARDRTP PILYRDRDRD LYPDSDWVPP PPPVRERSTR ENSTTRP00000001236/1-975 TDAFGHRAPD PLRGARDRTP PLLYRDRDRD LYPDSDWVPP PPPVRERSTR BACU002724/1-990 TDAFGHRAPD PLRGARDRTP PLLYRDRDRD LYPDSDWVPP PPPVRERSTR bmy_11930T0/1-958 TDAFGHRAPD PLRGARDRTP PLLYRDRDRD LYPDSDWVPP PPPVRERSTR 601 650 ENSP00000358799/1-977 TAATSVPAYE PLDSLDRRRD GWSLDRDRGD RDLPSSRDQP RKRRLPEESG ENSBTAP00000051477/1-914 TAATAVPAYE PLDSLDRRRD GWSLDRDRGD RDLPSSRDQP RKRRLPEESG ENSTTRP00000001236/1-975 TAATAVPAYE PLDSLDRRRD GWSLDRDRGD RDLPSSRDQP RKRRLPEESG BACU002724/1-990 TAATAVPAYE PLDSLDRRRD GWSLDRDRGD RDLPSSRDQP RKRRLPEESG bmy_11930T0/1-958 TAATAVPAYE PLDSLDRRRD GWSLDRDRGD RDLPSSRDQP RKRRLPEESG 651 700 ENSP00000358799/1-977 GRHLDRSPES DRPRKRHCAP SPDRSPELSS SRDRYNSDND RSSRLLLERP ENSBTAP00000051477/1-914 GRHLDRSPES DRPRKRHCAP SPDRSPELGS SRDRYNSDND RSSRLLLERP ENSTTRP00000001236/1-975 GRHLDRSPES DRPRKRHCAP SPDRSPELSS SRDRYNSDND RSSRLLLERP BACU002724/1-990 GRHLDRSPES DRPRKRHCAP SPDRSPELSS SRDRYNSDND RSSRLLLERP bmy_11930T0/1-958 GRHLDRSPES DRPRKRHCAP SPDRSPELSS SRDRYNSDND RSSRLLLERP 701 750 ENSP00000358799/1-977 SPIRDRRGSL EKSQGDKRDR KNSASAERDR KHRTTAPTEG KSPLKKEDRS ENSBTAP00000051477/1-914 SPIRDRRGSL EKSQGDKRDR KNSASAERDK KHRTTASTEG KSPLKKEDRP ENSTTRP00000001236/1-975 SPIRDRRGSL EKSQGDKRDR KNSASAERDR KHRTAASTEG KSPLKKEDRS BACU002724/1-990 SPIRDRRGSL EKSQGDKRDR KNSASAERDR KHRTAASTEG KSPLKKEDRS bmy_11930T0/1-958 SPIRDRRGSL EKSQGDKRDR KNSASAERDR KHRTAASTEG KSPLKKEDRS 751 800 ENSP00000358799/1-977 DGSAPSTSTA SSKLKSPSQK QDGGTAPVAS ASPKLCLAWQ GMLLLKNSNF ENSBTAP00000051477/1-914 DGSASSTSTA SSKLKSPSQK QDGGTAPAAA ASPKLCLAWQ GMLLLKNSNF ENSTTRP00000001236/1-975 DGSAPSTSTA SSKLKSPSQK QDGGTAPAAA ASPKLCLAWQ GMLLLKNSNF BACU002724/1-990 DGSAPSTSTA SSKLKSPSQK QDGGTAPAAA ASPKLCLAWQ GMLLLKNSNF bmy_11930T0/1-958 DGSAPSTSTA SSKLKSPSQK QDGGTAPAAA ASPKLCLAWQ GMLLLKNSNF 801 850 ENSP00000358799/1-977 PSNMHLLQGD LQVASSLLVE GSTGGKVAQL KITQRLRLDQ PKLDEVTRRI ENSBTAP00000051477/1-914 PSNMHLLQGD LQVASSLLVE GSTGGKVAQL KITQRLRLDQ PKLDEVTRRI ENSTTRP00000001236/1-975 PSNMHLLQGD LQVASSLLVE GSTGGKVAQL KITQRLRLDQ PKLDEVTRRI BACU002724/1-990 PSNMHLLQGD LQVASSLLVE GSTGGKVAQL KITQRLRLDQ PKLDEVTRRI bmy_11930T0/1-958 PSNMHLLQGD LQVASSLLVE GSTGGKVAQL KITQRLRLDQ PKLDEVTRRI 851 900 ENSP00000358799/1-977 KVAGPNGYAI LLAVPGSSDS RSSSSSAASD TATSTQRPLR NLVSYLKQKQ ENSBTAP00000051477/1-914 KVAGPNGYAI LLAVPGSSDS RSSSSSATSD TATSTQRPLR NLVSYLKQKQ ENSTTRP00000001236/1-975 KVAGPNGYAI LLAVPGSSDS RSSSSSATSD TATSTQRPLR NLVSYLKQKQ BACU002724/1-990 KVAGPNGYAI LLAVPGSSDS RSSSSSATSD TATSTQRPLR NLVSYLKQKQ bmy_11930T0/1-958 KVAGPNGYAI LLAVPGSSDS RSSSSSATSD TATSTQRPLR NLVSYLKQKQ 901 950 ENSP00000358799/1-977 AAGVISLPVG GNKDKENTGV LHAFPPCEFS QQFLDSPAKA LAKSEEDYLV ENSBTAP00000051477/1-914 AAGVISLPVG GNKDKENTGV LHAFPPCEFS QQFLDSPAKA LAKSEEDYLV ENSTTRP00000001236/1-975 AAGVISLPVG GNKDKENTGV LHAFPPCEFS QKFLDSPAKA LAKSEEDYLV BACU002724/1-990 AAGVISLPVG GNKDKENTGV LHAFPPCEFS QQFLDSPAKA LAKSEEDYLV bmy_11930T0/1-958 AAGVISLPVG GNKDKENTGV LHAFPPCEFS QQFLDSPAKA LAKSEEDYLV 951 1000 ENSP00000358799/1-977 MIIVRGFGFQ IGVRYENKKR ENL------- ---------- ---------- ENSBTAP00000051477/1-914 MIIVRGAS-- ---------- ---------- ---------- ---------- ENSTTRP00000001236/1-975 MIIVRVFGLE IGVRYENKR- ---------- ---------- ---------- BACU002724/1-990 MIIVRVFGLE IGVRYENKKR NGADPVNILV IVVCLKGEND FSEGDHLLLS bmy_11930T0/1-958 MIIVRGAS-- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000358799/1-977 ---------- ---------- -ALTLL---- ---- ENSBTAP00000051477/1-914 ---------- ---------- ---------- ---- ENSTTRP00000001236/1-975 ---------- ---------- -ELTLLH--- ---- BACU002724/1-990 PQLYEEMVLF AGTQEAGAST VSLTTVHESG ALLV bmy_11930T0/1-958 ---------- ---------- ---------- ----