KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:04 2014 Check: 00 .. Name: bmy_15822T0/1-482 Len: 513 Check: 790 Weight: 1.00 Name: ENSP00000371272/1-463 Len: 513 Check: 6703 Weight: 1.00 Name: ENSBTAP00000051478/1-456 Len: 513 Check: 4660 Weight: 1.00 Name: BACU002603/1-373 Len: 513 Check: 6617 Weight: 1.00 Name: ENSTTRP00000001625/1-454 Len: 513 Check: 9169 Weight: 1.00 // 1 50 bmy_15822T0/1-482 YKAGGEGWGR RLEFKCGVCR STWGLRLNAP GVTLFAVGMS EDEAAQAPRP ENSP00000371272/1-463 ---------- ---------- ---------- --------MS EEEAAQIPRS ENSBTAP00000051478/1-456 ---------- ---------- ---------- --------MS EDEAAQAPGP BACU002603/1-373 ---------- ---------- ---------- --------MS EDEAAQAPRP ENSTTRP00000001625/1-454 ---------- ---------- ---------- --------MS EDEAAQAPRP 51 100 bmy_15822T0/1-482 SLWEQDQQSV VQRVAALPLV RATCTAVSGA YSAAKDRHPL LGSACRLAEH ENSP00000371272/1-463 SVWEQDQQNV VQRVVALPLV RATCTAVCDV YSAAKDRHPL LGSACRLAEN ENSBTAP00000051478/1-456 SLWEQDQQSV VQRVAALPLI RATCSAVSEA YSAAKDRHPL LGSACRLAEH BACU002603/1-373 SLWEQDQQNV VQRVAALPLV RATCTAVSDA YSAAKDKHPL LGSACRLAEH ENSTTRP00000001625/1-454 SLWEQDQQNV VQRVAALPLV RATCTAVSDA YSAAKDRHPL LGSACRLAEH 101 150 bmy_15822T0/1-482 CVCGLTTRAL DHAQPLLSHL QPQRESPWPE SWVLWFVPLP HPLMLHLHDS ENSP00000371272/1-463 CVCGLTTRAL DHAQPLLEHL QPQLAT---- -----MNSLA CRGLDKLEEK ENSBTAP00000051478/1-456 CVCDLTTRAL DHAQPLLSHL QPQLAT---- -----VNDLA CRGLDKLEEK BACU002603/1-373 CVCGLTTRAL DHAQPLLSHL QPQ------- -------PPG SWGQGKGAGD ENSTTRP00000001625/1-454 CMCGLTTRAL DHAQPLLSHL QPQLAT---- -----VNDLA CRGLDKLGEK 151 200 bmy_15822T0/1-482 IPSLYV-PLS LDISP---IL ARCLSVSSGH SERSR----- LQGPGQAGGE ENSP00000371272/1-463 LPFLQQ-PSE TVVTSAKDVV ASSVTGVVDL ARRGRRWSVE LKRSVSHAVD ENSBTAP00000051478/1-456 LPFLQQ-PSE TVVTSAKGVV ASGVTGMVGL ARQGRRWSVE LKRSVSHAMD BACU002603/1-373 LQQLELGPFR QVVNSAKDAV ASGMTGVVGL ARQGRRWSVE LKRSMSHAVD ENSTTRP00000001625/1-454 LPFLQQ-PSE TVVTSAKDVV ASGVTGVVGL ARQGRRWSVE LKRSMSHAVD 201 250 bmy_15822T0/1-482 AALS------ ----PATFRD -AALAAEVEG PEVGSVEEQR RHQGYFVRLG ENSP00000371272/1-463 VVLEKSEELV DHFLPMTEEE LAALAAEAEG PEVGSVEDQR RQQGYFVRLG ENSBTAP00000051478/1-456 VVLEKSEELV DHFLPMTEEE LAALAAEAEG PEVGSVEEQR KHQGYFVRLG BACU002603/1-373 VVLGKSEELV DHFLPMTEEE LAALAAEVEG PEVGSVEEQR RQQGYFVRLG ENSTTRP00000001625/1-454 VVLGKSEELV DHFLPMTEEE LAALAAEVEG PEVGSVEEQR RHQGYFVRLG 251 300 bmy_15822T0/1-482 SLSARLRHLA YEHSLGKLRR KKHHAQDTLA QLQETLELID HMQCGVTPIT ENSP00000371272/1-463 SLSARIRHLA YEHSVGKLRQ SKHRAQDTLA QLQETLELID HMQCGVTPTA ENSBTAP00000051478/1-456 SLSTRLRHLA YEHSLGKLRQ KKHHAQDMLA QLQETLELIH RMQCGVTPIT BACU002603/1-373 SLSARLRHLA YEHSLGKLRR RKHHAQDTLA QLQETLELID HMQCGVTPIT ENSTTRP00000001625/1-454 SLSARLRHLA YEHSLGKLRR RKHHAQDTLA QLQETLELID HMQCGVTPIT 301 350 bmy_15822T0/1-482 PACPGKVHEL WEGWSQHSPE NSCR--NQAE LETLVLSRSL MRELQSTVDA ENSP00000371272/1-463 PACPGKVHEL WGEWGQRPPE SRRR--SQAE LETLVLSRSL TQELQGTVEA ENSBTAP00000051478/1-456 PARPGKVHEL WEDWSQRPLE NGRRRHSQAE LETLVLSRGL MEELQSTVDA BACU002603/1-373 PACPGKVHEL WEGWSQHSPE NSCR--SQ-- ---------- ---------- ENSTTRP00000001625/1-454 PAHPGKVHEL WEGWSQHSPE NGRR--SQAE LETLVLSRSL MRELQSTVDA 351 400 bmy_15822T0/1-482 LETSVRGLPP SAQEKVAEVR RSVDALQAAF ADASCFEDVP AAVLAEGRGR ENSP00000371272/1-463 LESSVRGLPA GAQEKVAEVR RSVDALQTAF ADARCFRDVP AAALAEGRGR ENSBTAP00000051478/1-456 LETSVRGLPP SAQEKVAEVR RSVDALQAAF ADARRFGDVP AAVLAEGRGS BACU002603/1-373 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001625/1-454 LETSVRGLPP SAQEKVAEVR RSVDALQAAF ADASCFEDVP AAVLAEGRGS 401 450 bmy_15822T0/1-482 VARAQMCVEE LLELVVQAVP LPWLVGPFAP ILVERPGPRP DLEALVDEVV ENSP00000371272/1-463 VAHAHACVDE LLELVVQAVP LPWLVGPFAP ILVERPEPLP DLADLVDEVI ENSBTAP00000051478/1-456 MARAHACVDE LLELVVQAVP LPWLVGPFAP ILVERPEPPP DLEALVDEVV BACU002603/1-373 -----MCVEE LLELVVQAVP LPWLVGPFAP ILVERPGPPP DLEALVDEVV ENSTTRP00000001625/1-454 VARAYTCVEE LLELVVQAVP LPWLVGPFAP ILVERPGPPP DLEALVDEVV 451 500 bmy_15822T0/1-482 GGPDPRWAHL NWPAQQRAWQ AQY------- -GDGMGLPGD IPEEEPKPPS ENSP00000371272/1-463 GGPDPRWAHL DWPAQQRAWE AEHRDGSGNG DGDRMGVAGD ICEQEPETPS ENSBTAP00000051478/1-456 GGPDPRWAHL DWPAQQRAWQ AQH------- -GEGTVLSGN IPEEEPEPPS BACU002603/1-373 GGPDPRWAHL NWPAQQRAWQ AQY------- -GDGMGLPGD ILEEEPKSPS ENSTTRP00000001625/1-454 GGPDPRWAHL NWPAQQRAWQ AQY------- -GDGMGLSGD IPEEEPEPPS 501 550 bmy_15822T0/1-482 RR-KHTLMPE LDF ENSP00000371272/1-463 CPVKHTLMPE LDF ENSBTAP00000051478/1-456 RP-KHTLMPE LDF BACU002603/1-373 RR-KHTLMPE LDF ENSTTRP00000001625/1-454 RR-KHTLMPE LDF