KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:09 2014 Check: 00 .. Name: ENSTTRP00000013840/1-743 Len: 1249 Check: 9523 Weight: 1.00 Name: ENSP00000269848/1-780 Len: 1249 Check: 7372 Weight: 1.00 Name: ENSBTAP00000051545/1-780 Len: 1249 Check: 9271 Weight: 1.00 Name: bmy_21839T0/1-783 Len: 1249 Check: 7687 Weight: 1.00 Name: BACU004366/1-1150 Len: 1249 Check: 4090 Weight: 1.00 // 1 50 ENSTTRP00000013840/1-743 VRCKYGKGRE SLRQGHP--- ---------- ---------- ---------- ENSP00000269848/1-780 ---MAAVDLE KLR------- ---------- ---------- ---------- ENSBTAP00000051545/1-780 ---MASVDLE KLR------- ---------- ---------- ---------- bmy_21839T0/1-783 ---MATVDLE KLR------- ---------- ---------- ---------- BACU004366/1-1150 MRADAYVDLS QPRKGRRPPA GPKATVLLPR PPTKRKALEE PRATPPAALS 51 100 ENSTTRP00000013840/1-743 ---------- ---------- ---------- ---------- ---------- ENSP00000269848/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051545/1-780 ---------- ---------- ---------- ---------- ---------- bmy_21839T0/1-783 ---------- ---------- ---------- ---------- ---------- BACU004366/1-1150 PRGTSSPGSQ AKAKPSKKSE SNAEPQRLPL GNGIQTMSAS VQRAMAVSSG 101 150 ENSTTRP00000013840/1-743 ---------- ---------V RGTRHSRRAP KLPWAPARGS QCGGWARGAR ENSP00000269848/1-780 ---------- ---------A SGAGKAIGV- ---------- ---------- ENSBTAP00000051545/1-780 ---------- ---------T TGAGKAIGV- ---------- ---------- bmy_21839T0/1-783 ---------- ---------T SGAGKAIGV- ---------- ---------- BACU004366/1-1150 DVPGARGAVE GILIQQVFEA GGSKKCIQVG GEFYTPSKFE DPGGGKNKTR 151 200 ENSTTRP00000013840/1-743 TGPLTS---- ------APGG THSRAGP--- ---------- ---------- ENSP00000269848/1-780 ---------- ------LTSG GDAQ------ ---------- ---------- ENSBTAP00000051545/1-780 ---------- ------LTSG GDAQ------ ---------- ---------- bmy_21839T0/1-783 ---------- ------LTSG GDAQ------ ---------- ---------- BACU004366/1-1150 SGSLKTLVRA KGTQAPAPGG GDSRAGQPDR APGPPALPSE PQLHQKNEDE 201 250 ENSTTRP00000013840/1-743 ---------- ---------- ---------- ---------- ---------- ENSP00000269848/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051545/1-780 ---------- ---------- ---------- ---------- ---------- bmy_21839T0/1-783 ---------- ---------- ---------- ---------- ---------- BACU004366/1-1150 CAACGDGGEL LCCDGCPRAF HLACLTPPLH RIPSILGSPA HRPAGPSPVA 251 300 ENSTTRP00000013840/1-743 ---------- ---------- ---------- ---------- ---------- ENSP00000269848/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051545/1-780 ---------- ---------- ---------- ---------- ---------- bmy_21839T0/1-783 ---------- ---------- ---------- ---------- ---------- BACU004366/1-1150 PPIPLSFPMG NGKGDLEEPS VLRAWESTVP SASPCMSLAG DNASSGTWRC 301 350 ENSTTRP00000013840/1-743 ---------- ---------- ---------- ---------- ---------- ENSP00000269848/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051545/1-780 ---------- ---------- ---------- ---------- ---------- bmy_21839T0/1-783 ---------- ---------- ---------- ---------- ---------- BACU004366/1-1150 ASCLQGRAQR DLPRAEEPRP QEPPAETPVL LALRSAGEEA RGPPRERPAG 351 400 ENSTTRP00000013840/1-743 ---------- ---------- ---------- ---------- ---------- ENSP00000269848/1-780 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051545/1-780 ---------- ---------- ---------- ---------- ---------- bmy_21839T0/1-783 ---------- ---------- ---------- ---------- ---------- BACU004366/1-1150 MDVAVTYKLL ASPPAAPPLV LDPSALHPLL CVGPEGQQVS GVLGLALSCR 401 450 ENSTTRP00000013840/1-743 -----RRMNA AVRAVTRMGI YVGAKVFLIY EGYEGLVEGG ENIRPANWLS ENSP00000269848/1-780 ------GMNA AVRAVTRMGI YVGAKVFLIY EGYEGLVEGG ENIKQANWLS ENSBTAP00000051545/1-780 ------GMNA AVRAVTRMGI YVGAKVFLIY EGYEGLVEGG ENIKQANWLS bmy_21839T0/1-783 ------GMNA AVRAVTRMGI YVGAKVFLIY EGYEGLVEGG ENIRPANWLS BACU004366/1-1150 VTDVHNGMNA AVRAVTRMGI YVGAKVFLIY EGYEGLVEGG ENIRPANWLS 451 500 ENSTTRP00000013840/1-743 VSNIIQLGGT VIGSARCKAF TTREGRRAAA YNLVQRGITN LCVIGGDGSL ENSP00000269848/1-780 VSNIIQLGGT IIGSARCKAF TTREGRRAAA YNLVQHGITN LCVIGGDGSL ENSBTAP00000051545/1-780 VSNIIQLGGT VIGSARCKAF TTREGRRAAA YNLVQRGITN LCVIGGDGSL bmy_21839T0/1-783 VSNIIQLGGT VIGSARCKAF TTREGRRAAA YNLVQRGITN LCVIGGDGSL BACU004366/1-1150 VSNIIQLGGT VIGSARCKAF TTREGRRAAA YNLVQRGITN LCVIGGDGSL 501 550 ENSTTRP00000013840/1-743 TGANIFRSEW GSLLEELVSE GKISQSTAQT YSHLSIAGLV GSIDNDFCGT ENSP00000269848/1-780 TGANIFRSEW GSLLEELVAE GKISETTART YSHLNIAGLV GSIDNDFCGT ENSBTAP00000051545/1-780 TGANIFRSEW GSLLEELVSE GKISEGTAQT YSHLNIAGLV GSIDNDFCGT bmy_21839T0/1-783 TGANIFRSEW GSLLEELVSE GKISQSTAQT YSHLNIAGLV GSIDNDFCGT BACU004366/1-1150 TGANIFRSEW GGLLEELVSE GKISQSTAQT YSHLNIAGLV GSIDNDFCGT 551 600 ENSTTRP00000013840/1-743 DMTIGTDSAL HRIMEVIDAI TTTAQXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000269848/1-780 DMTIGTDSAL HRIMEVIDAI TTTAQSHQRT FVLEVMGRHC GYLALVSALA ENSBTAP00000051545/1-780 DMTIGTDSAL HRIMEVIDAI TTTAQSHQRT FVLEVMGRHC GYLALVSALA bmy_21839T0/1-783 DMTIGTDSAL HRIMEVIDAI TTTAQSHQRT FVLEVMGRHC GYLALVSALA BACU004366/1-1150 DMTIGTDSAL HRIMEVIDAI TTTAQSHQRT FVLEVMGRHC GYLALVSALA 601 650 ENSTTRP00000013840/1-743 XXXXXXXXXE APPEDGWENF MCERLGEXXX XXXXXXXXXX XXXXXXXXXX ENSP00000269848/1-780 SGADWLFIPE APPEDGWENF MCERLGETRS RGSRLNIIII AEGAIDRNGK ENSBTAP00000051545/1-780 SGADWLFIPE APPEDGWENF MCERLGETRS RGSRLNIIII AEGAIDRNGK bmy_21839T0/1-783 SGADWLFIPE APPEDGWENF MCARLGETRS RGSRLNIIII AEGAIDRNGK BACU004366/1-1150 SGADWLFIPE APPEDGWENF MCERLGETRS RGSRLNIIII AEGAIDRNGK 651 700 ENSTTRP00000013840/1-743 XXXXXXXXX- ---------- ---------- ---------- ---------- ENSP00000269848/1-780 PISSSYVKD- ---------- ---------- ---------- ---------- ENSBTAP00000051545/1-780 PISSRYVKD- ---------- ---------- ---------- ---------- bmy_21839T0/1-783 PISSRYVKDI IPHPRGPVQP PNSVPVTGSS PCRPPIDRGA HCLSSTRFIT BACU004366/1-1150 PISSRYVKD- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000013840/1-743 ---------- LVVQRLGFDT RVTVLGHVQR GGTPSAFDRI LSSKMGMEAV ENSP00000269848/1-780 ---------- LVVQRLGFDT RVTVLGHVQR GGTPSAFDRI LSSKMGMEAV ENSBTAP00000051545/1-780 ---------- LVVQRLGFDT RVTVLGHVQR GGTPSAFDRI LSSKMGMEAV bmy_21839T0/1-783 EQLWGDSFVP LVVQRLGFDT RVTVLGHVQR GGTPSAFDRV LSSKMGMEAV BACU004366/1-1150 ---------- LVVQRLGFDT RVTVLGHVQR GGTPSAFDRI LSSKMGMEAV 751 800 ENSTTRP00000013840/1-743 MALLEATPHT PACVVSLSGN QSVRLPLMEC VQMTKEVQKA MDEKRFEEAI ENSP00000269848/1-780 MALLEATPDT PACVVTLSGN QSVRLPLMEC VQMTKEVQKA MDDKRFDEAT ENSBTAP00000051545/1-780 MALLEATPDT PACVVSLSGN QSVRLPLMEC VQMTKEVQKA MDEKRFDEAI bmy_21839T0/1-783 MALLETTPDT PACVVSLSGN QSVRLPLMEC VQMTKEVQKA MDEKRFEEAI BACU004366/1-1150 MALLETTPDT PACVVSLSGN QSVRLPLMEC VQMTKEVQKA MDEKRFEEAI 801 850 ENSTTRP00000013840/1-743 QLRGRSFENN WNIYKLLAHQ KISKEKTSFS LAILNVGAPA AGMNAAVRSA ENSP00000269848/1-780 QLRGGSFENN WNIYKLLAHQ KPPKEKSNFS LAILNVGAPA AGMNAAVRSA ENSBTAP00000051545/1-780 QLRGGSFENN WNIYKLLSHQ KISKEKTNFS LAILNVGAPA AGMNAAVRSA bmy_21839T0/1-783 QLRGRSFENN WNIYKLLAHQ KISKEKTSFS LAILNVGAPA AGMNAAVRSA BACU004366/1-1150 QLRGRSFENN WNIYKLLAHQ KISKEKTSFS LAILNVGAPA AGMNAAVRSA 851 900 ENSTTRP00000013840/1-743 VRTGISQGHT VYVVHDGFEG LAKGQVQEVG WHDVAGWLGR GGSMLGTKRT ENSP00000269848/1-780 VRTGISHGHT VYVVHDGFEG LAKGQVQEVG WHDVAGWLGR GGSMLGTKRT ENSBTAP00000051545/1-780 VRSGISQGHT VYVVHDGFEG LAKNQVQEVS WHDVAGWLGR GGSMLGTKRT bmy_21839T0/1-783 VRTGISQGHT VYVVHDGFEG LAKGQVQEVG WHDVAGWLGR GGSMLGTKRT BACU004366/1-1150 VRTGISQGHT VYVVHDGFEG LAKGQVQEVG WHDVAGWLGR GGSTLGTKRT 901 950 ENSTTRP00000013840/1-743 LPKGXXXXXX XXXXXXXXXX XXXXXXXXAY EGVLQLVEAR ERYEELCIVM ENSP00000269848/1-780 LPKGQLESIV ENIRIYGIHA LLVVGGFEAY EGVLQLVEAR GRYEELCIVM ENSBTAP00000051545/1-780 LPKGFMEKIV ENIRLHNIHA LLVIGGFEAY EGVLQLVEAR GRYEELCIVM bmy_21839T0/1-783 LPKGYMEKIV ENIHIHNIHA LLVIGGFEAY EGVLQLVEAR ERYEELCIVM BACU004366/1-1150 LPKGYMEKIV ENIRMHNIHA LLVIGGFEAY EGVLQLVEAR ERYEELCIVM 951 1000 ENSTTRP00000013840/1-743 CVIPATISNN VPGTDFSLGS DTAVNAAMES CDRIKQSASG TKRRVFIVET ENSP00000269848/1-780 CVIPATISNN VPGTDFSLGS DTAVNAAMES CDRIKQSASG TKRRVFIVET ENSBTAP00000051545/1-780 CVIPATISNN VPGTDFSLGS DTAVNAAMES CDRIKQSASG TKRRVFIVET bmy_21839T0/1-783 CVIPATISNN VPGTDFSLGS DTAVNAAMES CDRIKQSASG TKRRVFIVET BACU004366/1-1150 CVIPATISNN VPGTDFSLGS DTAVNAAMES CDRIKQSASG TKRRVFIVET 1001 1050 ENSTTRP00000013840/1-743 MGGYCGYLAT VTGIAVGADA AYVFEDPFNI QDLK------ ---------- ENSP00000269848/1-780 MGGYCGYLAT VTGIAVGADA AYVFEDPFNI HDLK------ ---------- ENSBTAP00000051545/1-780 MGGYCGYLAT VTGIAVGADA AYVFEDPFNI QDLK------ ---------- bmy_21839T0/1-783 MGGYCGYLAT VTGIAVGADA AYVFEDPFNI QDLK------ ---------- BACU004366/1-1150 MGGYCGYLAT VTGIAVGADA AYVFEDPFNI QDLKAHLLAS PEEPLPDSLR 1051 1100 ENSTTRP00000013840/1-743 ---------- ---------- ----ANVEHM TEKMKTDIQR GLVLRNEKCH ENSP00000269848/1-780 ---------- ---------- ----VNVEHM TEKMKTDIQR GLVLRNEKCH ENSBTAP00000051545/1-780 ---------- ---------- ----ANVEHM TEKMKTEIQR GLVLRNEKCH bmy_21839T0/1-783 ---------- ---------- ----ANVEHM TEKMKTDIQR GLVLRNERCH BACU004366/1-1150 LREGVCSAGC CPRRLRSAQV LTPQANVEHM TEKMKTDIQR GLVLRNEKCH 1101 1150 ENSTTRP00000013840/1-743 EHYTTEFLYN LYSSEGKGIF DCRTNVLGHL QQGGAPTPFD RNYGTKLGVK ENSP00000269848/1-780 DYYTTEFLYN LYSSEGKGVF DCRTNVLGHL QQGGAPTPFD RNYGTKLGVK ENSBTAP00000051545/1-780 EHYTTEFLYN LYSSEGKGVF DCRTNVLGHL QQGGAPTPFD RNYGTKLGVK bmy_21839T0/1-783 EYYTTEFLYN LYSSEGKGIF DCRTNVLGHL QQGGAPTPFD RNYGTKLGVK BACU004366/1-1150 EYYTTEFLYN LYASEGKGIF DCRTNVLGHL QQGGAPTPFD RNYGTKLGVK 1151 1200 ENSTTRP00000013840/1-743 AILWMSEKLR AVYRKGRVFA NAPD------ ---------- ---------- ENSP00000269848/1-780 AMLWLSEKLR EVYRKGRVFA NAPDSACVIG LKKKAVAFSP VTELKKDTDF ENSBTAP00000051545/1-780 AIIWMSEKLR AVYRNGRVFA NASDSACVIG LQKKVVAFSP VTELKKDTDF bmy_21839T0/1-783 AILWMSEKLR AVYRKGRVFA NAPGSACVIG LQKKAVAFSP VTELKKDTDF BACU004366/1-1150 AILWMSEKLR AVYRKGRVFA NAPDSACVIG LQKKAVAFSP VTELKKDTDF 1201 1250 ENSTTRP00000013840/1-743 ---------- ---------- ---------- ---------- --------- ENSP00000269848/1-780 EHRMPREQWW LSLRLMLKML AQYRISMAAY VSGELEHVTR RTLSMDKGF ENSBTAP00000051545/1-780 EHRMPREQWW LNLRLMLKML AHYRISMADY VSGELEHVTR RTLSIETGF bmy_21839T0/1-783 E--------- ---------- ---------- ---------- --------- BACU004366/1-1150 E--------- ---------- ---------- ---------- ---------