KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:12 2014 Check: 00 .. Name: ENSTTRP00000008204/1-608 Len: 1052 Check: 5081 Weight: 1.00 Name: ENSP00000268613/1-760 Len: 1052 Check: 6790 Weight: 1.00 Name: BACU009713/1-713 Len: 1052 Check: 9041 Weight: 1.00 Name: ENSBTAP00000051651/1-663 Len: 1052 Check: 6139 Weight: 1.00 Name: bmy_13677T0/1-993 Len: 1052 Check: 1233 Weight: 1.00 // 1 50 ENSTTRP00000008204/1-608 ---------- ---------- ---------- ---------- ---------- ENSP00000268613/1-760 MKTPPGASSR TKCSRELRSF CAFSCPRAKQ PTCTAWFPQQ EHPSENGPQM BACU009713/1-713 --MQPTTPLV LCVLLS---- ---------- ---------- ---------- ENSBTAP00000051651/1-663 ---------- ---------- ---------- ---------- ---------- bmy_13677T0/1-993 MRSSFSENNL LCFKKK---- ---------- ---------- ---------- 51 100 ENSTTRP00000008204/1-608 ---------- ---------- ---------- ---------- ---------- ENSP00000268613/1-760 PGRDPPAAST MQVLLLTSAE DLDCTPGFQQ KVFHINQPAE FIEDQSILNL BACU009713/1-713 ---------- -QVLLLTSAE DLDCTPGFQQ KLFHINQPAE FIEDQAILNL ENSBTAP00000051651/1-663 ---------- ---------- ---------- ---------- -------LPV bmy_13677T0/1-993 ---------- -SVA------ --------RG KCKTLAEKTK SRASSSVFNV 101 150 ENSTTRP00000008204/1-608 ---------- ---------- ---------- ---------- ---------- ENSP00000268613/1-760 TFSDCKGNDK LRYEVSSPYF KVNSDGGLVA LRNITAVGKT LFVHARTPHA BACU009713/1-713 TFSDCKGNDK LHYEVSSPYF KVNNDGSLVA LRNITAVGKT LFVHARTPHA ENSBTAP00000051651/1-663 TFSDCKGNDK LHYEVSSPYF RVNTDGSLVA LRNITAVGKT LFVHARTPHA bmy_13677T0/1-993 TFNDCKGNDK LHYEVSSPYF KVNNDGSLVA LRNITAVGKT LFVHARTPHA 151 200 ENSTTRP00000008204/1-608 --MAELVIVG GKDIRGSLQD IFKFERTSPV PRQKRSIVVS PILIPENQRQ ENSP00000268613/1-760 EDMAELVIVG GKDIQGSLQD IFKFARTSPV PRQKRSIVVS PILIPENQRQ BACU009713/1-713 EDMAELVIVG GKDIRGSLQD IFKFERTSPV PRQKRSIVVS PILIPENQRQ ENSBTAP00000051651/1-663 EDMAELVIVG GKDIQGSLQD IFKFARTSPV PRQKRSIVVS PILIPENQRQ bmy_13677T0/1-993 EDMAELVIVG GKDIRGSLQD IFKFERTSPV PRQKRSIVVS PILIPENQRQ 201 250 ENSTTRP00000008204/1-608 PFPRDVGK-- ---------- ---------- ---------- ---------- ENSP00000268613/1-760 PFPRDVGK-- ---------- ---------- ---------- ---------- BACU009713/1-713 PFPRDVGK-- ---------- ---------- ---------- ---------- ENSBTAP00000051651/1-663 PFPRDVGK-- ---------- ---------- ---------- ---------- bmy_13677T0/1-993 PFPRDVGKAR FPERITQESR CQNEFVTCEQ QAPSTQXSVS XAASSSAKCW 251 300 ENSTTRP00000008204/1-608 ---------- ---------- ---------- ---------- ---------- ENSP00000268613/1-760 ---------- ---------- ---------- ---------- ---------- BACU009713/1-713 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051651/1-663 ---------- ---------- ---------- ---------- ---------- bmy_13677T0/1-993 QKWPSLLTNS SYRACFSCAT QXSTSPMLRX VGFXEXTELR ALEHSGTREW 301 350 ENSTTRP00000008204/1-608 ---------- ---------- ---------- ---------- ------VVDS ENSP00000268613/1-760 ---------- ---------- ---------- ---------- ------VVDS BACU009713/1-713 ---------- ---------- ---------- ---------- ------VVDS ENSBTAP00000051651/1-663 ---------- ---------- ---------- ---------- ------VVDS bmy_13677T0/1-993 SVNILNRREE EKKPVSRELK IIQMSNLELH EVTSLLDSSL YVTPGLVVDS 351 400 ENSTTRP00000008204/1-608 DRPEGSKFRL TGKGVDQEPK GIFRINENTG SVSVTRNLDR ETIATYQLLV ENSP00000268613/1-760 DRPERSKFRL TGKGVDQEPK GIFRINENTG SVSVTRTLDR EVIAVYQLFV BACU009713/1-713 DRPEGSKFRL TGKGVDQEPK GIFRINENTG SVSVTRNLDR ETIATYQLLV ENSBTAP00000051651/1-663 DRPEGSKFRL TGKGVDQEPK GIFRINENTG SVSVTRNLDR ETIATYQLFV bmy_13677T0/1-993 DRPEGSKFRL TGKGVDQEPK GIFRINENTG GVSVTRNLDR ETIATYQLLV 401 450 ENSTTRP00000008204/1-608 ETIDVNGRTL EGPVPLEVIV IDQNDNRPIF QEGPYIGHVM EGSPT----- ENSP00000268613/1-760 ETTDVNGKTL EGPVPLEVIV IDQNDNRPIF REGPYIGHVM EGSPT----- BACU009713/1-713 ETIDVNGRTL EGPVPLEVIV IDQNDNRPIF REGPYIGHVM EGSPT----- ENSBTAP00000051651/1-663 ETVDVNGRTL EGPVPLEVIV IDQNDNRPIF REGPYIGHVM EGSPT----- bmy_13677T0/1-993 ETIDVNGRTL EGPVPLEVIV IDQNDNRPIF REGPYIGHVM EGSPTECHSS 451 500 ENSTTRP00000008204/1-608 ---------- ---------- --GTTVMRMT AFDADDPATD NALLRYNIRQ ENSP00000268613/1-760 ---------- ---------- --GTTVMRMT AFDADDPATD NALLRYNIRQ BACU009713/1-713 ---------- ---------- --GTTVMRMT AFDADDPATD NALLRYNIRQ ENSBTAP00000051651/1-663 ---------- ---------- --GTTVMRMT AFDADDPATD NALLRYNIRQ bmy_13677T0/1-993 EDKIPGLQGQ YSEHDRMDFI LQGTTVMRMT AFDADDPATD NALLRYNIRQ 501 550 ENSTTRP00000008204/1-608 QTPDRPSPNM FYIDPEKGDI VTVVSPALLD RE-------- -----TLENP ENSP00000268613/1-760 QTPDKPSPNM FYIDPEKGDI VTVVSPALLD RE-------- -----TLENP BACU009713/1-713 QTPDKPSPNM FYIDPEKGDI VTVVSPALLD RE-------- -----TLENP ENSBTAP00000051651/1-663 QTPDKPSPNM FYIDPEKGDI VTVVSPALLD RE-------- -----TLENP bmy_13677T0/1-993 QTPDKPSPNM FYIDPEKGDI VTVVSPALLD RENSDSASLN LIGFQTLENP 551 600 ENSTTRP00000008204/1-608 KYELIIEAQD MAGLDVGLTG TATATIMIDD KNDHSPKFTK KEFQATVEEG ENSP00000268613/1-760 KYELIIEAQD MAGLDVGLTG TATATIMIDD KNDHSPKFTK KEFQATVEEG BACU009713/1-713 KYELIIEAQD MAGLDVGLTG TATATIMIDD KNDHSPKFTK KEFQATVEEG ENSBTAP00000051651/1-663 KYELIIEAQD MAGLDVGLTG TATATIMIDD KNDHSPKFTK KEFQATVEEG bmy_13677T0/1-993 KYELIIEAQD MAGLDVGLTG TATATIMIDD KNDHSPKFTK KEFQATVEEG 601 650 ENSTTRP00000008204/1-608 AVGVIVNLTV EDKDDPTTGA WRAAYTIING NPGQSFEIHT NPQTNEGMLS ENSP00000268613/1-760 AVGVIVNLTV EDKDDPTTGA WRAAYTIING NPGQSFEIHT NPQTNEGMLS BACU009713/1-713 AVGVIVNLTV EDKDDPTTGA WRAAYTIING NPGQSFEIHT NPQSNEGMLS ENSBTAP00000051651/1-663 AMGVIVNLTV EDKDDPTTGA WRAAYTIING NPGQSFEIHT NPQTNEGMLS bmy_13677T0/1-993 AVGVIVNLTV EDKDDPTTGA WRAAYTIING NPGQSFEIHT NPQTNEGMLS 651 700 ENSTTRP00000008204/1-608 VVKPLDYEIS AFHTLLIKVE NEDPLVPXXX XXXXXXXXXX XXXXXXXXXX ENSP00000268613/1-760 VVKPLDYEIS AFHTLLIKVE NEDPLVPDVS YGPSSTATVH ITVLDVNEGP BACU009713/1-713 VVKPLDYEIS AFHTLLIKVE NEDPLVPDVS YGPSSTATVH ITVLDVNEGP ENSBTAP00000051651/1-663 VVKPLDYEIS AFHTLLIKVE NEDPLVPDVS YGSSSTATVH ITVLDANESP bmy_13677T0/1-993 VVKPLDYEIS AFHTLLIKVE NEDPLVPDVS YGPSSTATVH ITVLDVNEDP 701 750 ENSTTRP00000008204/1-608 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXYS VYKDPAGWLN ENSP00000268613/1-760 VFYPDPMMVT RQEDLSVGSV LLTVNATDPD SLQHQTIRYS VYKDPAGWLN BACU009713/1-713 VFHPDPMMVT KQEHISVGSV LLTVNATDPD SLQHQTIRYS AYKDPAGWLN ENSBTAP00000051651/1-663 VFYPDPMMVT KQENISVGSV LLTVNATDPD SLQRQTIRYS VYKDPAGWLN bmy_13677T0/1-993 VFHPDPMMVT KQEHISVGSV LLTVNATDPD SLQHQTIRYS VYKDPAGWLN 751 800 ENSTTRP00000008204/1-608 INPINGTVDT TAVLDRESPF VHNSVYTALF LAIDSGNPPA TGTGTLLITL ENSP00000268613/1-760 INPINGTVDT TAVLDRESPF VDNSVYTALF LAIDSGNPPA TGTGTLLITL BACU009713/1-713 INPINGTVDT TAVLDRESPF VHNSVYTALF LAIDSGDPPA TGTGTLLITL ENSBTAP00000051651/1-663 INPINGTVDT TALLDRESPF VHNSVYTALF LATDSGNPPA TGTGTLLITL bmy_13677T0/1-993 INPINGTVDT TAVLDRESPF VHNSVYTALF LAIDSGNPPA TGTGTLLITL 801 850 ENSTTRP00000008204/1-608 EDVNDNAPFI YPTVAEVCDD AKNLSVVILG ASDKDLHPNT DPFKFEIHKP ENSP00000268613/1-760 EDVNDNAPFI YPTVAEVCDD AKNLSVVILG ASDKDLHPNT DPFKFEIHKQ BACU009713/1-713 EDVNDNAPFI YPTVAEVCDD AKNLSVVILG ASDKDLHPNT DPFKFEIHKP ENSBTAP00000051651/1-663 EDVNDNAPFI YPTVAEVCDD AKNLSVVILG ATDKDLHPNT DPFKFEIHKQ bmy_13677T0/1-993 EDVNDNAPFI YPTVAEVCDD AKNLSVVILG ASDKDLHPNT DPFKFEIHKP 851 900 ENSTTRP00000008204/1-608 TVPDKVWKIS KINNTHALVS LLQNLNKANY HLPIMVTDSG KPPMTNITDL ENSP00000268613/1-760 AVPDKVWKIS KINNTHALVS LLQNLNKANY NLPIMVTDSG KPPMTNITDL BACU009713/1-713 TVPDKVWKIS KINNTHALVS LLQNLNKANY HLPIMVTDSG KPPMTNITDL ENSBTAP00000051651/1-663 TVPDKVWKIS KINNTHALVS LLQNLNKANY HLPIMVTDSG KPPMTNITDL bmy_13677T0/1-993 TVPDKVWKIS KINNTHALVS LLQNLNKANY HLPIMVTDSG KPPMTNITDL 901 950 ENSTTRP00000008204/1-608 RVQVCSCKNS KVDCNTAGAP HFSTTAVLLL SFFSLARL-- ---------- ENSP00000268613/1-760 RVQVCSCRNS KVDCNAAGAL RFSLPSVLLL SLFSLACL-- ---------- BACU009713/1-713 RVQVCSCKNS KVDCNTAGAP HFSATAVLLL SFFSLARL-- ---------- ENSBTAP00000051651/1-663 RVQVCSCKNS KVDCNAAGAP HFSAATALLL SLFSLARL-- ---------- bmy_13677T0/1-993 RVQVCSCKNS KVDCNTAGAP HFSATAVLLL SFFSLARESE GYSLLQPRIH 951 1000 ENSTTRP00000008204/1-608 ---------- ---------- ---------- ---------- ---------- ENSP00000268613/1-760 ---------- ---------- ---------- ---------- ---------- BACU009713/1-713 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051651/1-663 ---------- ---------- ---------- ---------- ---------- bmy_13677T0/1-993 IPSGFSGDPD HDRESRPPRH MYNSQCHRGG HTCIRRGHQV VVCRALEERG 1001 1050 ENSTTRP00000008204/1-608 ---------- ---------- ---------- ---------- ---------- ENSP00000268613/1-760 ---------- ---------- ---------- ---------- ---------- BACU009713/1-713 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051651/1-663 ---------- ---------- ---------- ---------- ---------- bmy_13677T0/1-993 KKWKLLVPSL TSPLDDMSSR IDDLEKNIAD LMTQAGVEEL DGENKIPATQ 1051 1100 ENSTTRP00000008204/1-608 -- ENSP00000268613/1-760 -- BACU009713/1-713 -- ENSBTAP00000051651/1-663 -- bmy_13677T0/1-993 KS