KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:15 2014 Check: 00 .. Name: ENSP00000430846/1-911 Len: 1155 Check: 849 Weight: 1.00 Name: ENSBTAP00000051715/1-911 Len: 1155 Check: 9692 Weight: 1.00 Name: ENSTTRP00000004325/1-898 Len: 1155 Check: 3972 Weight: 1.00 Name: bmy_02171T0/1-1003 Len: 1155 Check: 5438 Weight: 1.00 Name: BACU011141/1-692 Len: 1155 Check: 5675 Weight: 1.00 // 1 50 ENSP00000430846/1-911 MAEKAPPGLN RKTSRSTLSL PPEPVDIIRS KTCSRRVKIN VGGLN--HEV ENSBTAP00000051715/1-911 MAEKVPPGLN RKTSRSTLSL PPEPVDIIRS KTCSRRVKIN VGGLN--HEV ENSTTRP00000004325/1-898 ---------- ---SRSTLSL PPEPVDIIRS KTCSRRVKIN VGGLN--HEV bmy_02171T0/1-1003 ---------- ---------- ---------- --MRTNVKIY LDGLELGEGL BACU011141/1-692 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000430846/1-911 LWRTLDRLPR TRLGKLRDCN THESLLEVCD DYNLNENEYF FDRHPGAFTS ENSBTAP00000051715/1-911 LWRTLDRLPR TRLGKLRDCN THESLLEVCD DYNLNENEYF FDRHPGAFTS ENSTTRP00000004325/1-898 LWRTLDRLPR TRLGKLRDCN THESLLEVCD DYNLNENEYF FDRHPGAFTS bmy_02171T0/1-1003 LRQSLD---- --MGLTVEIN PCNSLLMVID EL-------- ---------- BACU011141/1-692 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000430846/1-911 ILNFYRTGKL HMMEEMCALS FGQELDYWGI DEIYLESCCQ ARYHQKKEQM ENSBTAP00000051715/1-911 ILNFYRTGKL HMMEEMCALS FGQELDYWGI DEIYLESCCQ ARYHQKKEQM ENSTTRP00000004325/1-898 ILNFYRTGKL HMMEEMCALS FGQELDYWGI DEIYLESCCQ ARYHQKKEQM bmy_02171T0/1-1003 ---------- ---------- ---------- ---------- ---------- BACU011141/1-692 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000430846/1-911 NEELRREAET MREREGEEFD NTCCPDKRKK LWDLLEKPNS SVAAKILAIV ENSBTAP00000051715/1-911 NEELRREAET MREREGEEFD NTCCPEKRKK LWDLLEKPNS SVAAKILAIV ENSTTRP00000004325/1-898 NEELRREAET MREREGEEFD NTCCPEKRKK LWDLLEKPNS SVAAKXXXXX bmy_02171T0/1-1003 ---------- ---------- ---------- ---------- -----ILAIV BACU011141/1-692 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000430846/1-911 SILFIVLSTI ALSLNTLPEL QETDEFGQLN DNRQLAHVEA VCIAWFTMEY ENSBTAP00000051715/1-911 SILFIVLSTI ALSLNTLPEL QEMDEFGQPN DNPQLAHVEA VCIAWFTMEY ENSTTRP00000004325/1-898 XXXXXXXXXX XXXXXXXXXX XXMDEFGQPN DNPQLAHVEA VCIAW-TMEY bmy_02171T0/1-1003 SILFIVLSTI ALSLNTLPEL QEMDEFGQPN DNPQLAHVEA VCIAWFTMEY BACU011141/1-692 ---------- ---------- --MDEFGQPN DNPQLAHVEA VCIAWFTMEY 251 300 ENSP00000430846/1-911 LLRFLSSPNK WKFFKGPLNV IDLLAILPYY VTIFLTESNK SVLQFQNVRR ENSBTAP00000051715/1-911 LLRFLSSPNK WKFFKGPLNV IDLLAILPYY VTIFLTESNK SVLQFQNVRR ENSTTRP00000004325/1-898 LLRFLSSPNK WKFFKGPLNV IDLLAILPYY VTIFLTESNK SVLQFQNVRR bmy_02171T0/1-1003 LLRFLSSPNK WKFFKGPLNV IDLLAILPYY VTIFLTESNK SVLQFQNVRR BACU011141/1-692 LLRFLSSPNK WKFFKGPLNV IDLLAILPYY VTIFLTESNK SVLQFQNVRR 301 350 ENSP00000430846/1-911 VVQIFRIMRI LRILKLARHS TGLQSLGFTL RRSYNELGLL ILFLAMGIMI ENSBTAP00000051715/1-911 VVQIFRIMRI LRILKLARHS TGLQSLGFTL RRSYNELGLL ILFLAMGIMI ENSTTRP00000004325/1-898 VVQIFRIMRI LRILKLARHS TGLQSLGFTL RRSYNELGLL ILFLAMGIMI bmy_02171T0/1-1003 VVQIFRIMRI LRILKLARHS TGLQSLGFTL RRSYNELGLL ILFLAMGIMI BACU011141/1-692 VVQIFRIMRI LRILKLARHS TGLQSLGFTL RRSYNELGLL ILFLAMGIMI 351 400 ENSP00000430846/1-911 FSSLVFFAEK DEDATKFTSI PASFWWATIT MTTVGYGDIY PKTLLGKIVG ENSBTAP00000051715/1-911 FSSLVFFAEK DEDATKFTSI PASFWWATIT MTTVGYGDIY PKTLLGKIVG ENSTTRP00000004325/1-898 FSSLVFFAEK DEDATKFTSI PASFWWATIT MTTVGYGDIY PKTLLGKIVG bmy_02171T0/1-1003 FSSLVFFAEK DEDATKFTSI PASFWWATIT MTTVGYGDIY PKTLLGKIVG BACU011141/1-692 FSSLVFFAEK DEDATKFTSI PASFWWATIT MTTVGYGDIY PKTLLGKIVG 401 450 ENSP00000430846/1-911 GLCCIAGVLV IALPIPIIVN NFSEFYKEQK RQEKAIKRRE ALERAKRNGS ENSBTAP00000051715/1-911 GLCCIAGVLV IALPIPIIVN NFSEFYKEQK RQEKAIKRRE ALERAKRNGS ENSTTRP00000004325/1-898 GLCCIAGVLV IALPIPIIVN NFSEFYKEQK RQEKAIKRRE ALERAKRNGS bmy_02171T0/1-1003 GLCCIAGVLV IALPIPIIVN NFSEFYKEQK RQEKAIKRRE ALERAKRNGS BACU011141/1-692 GLCCIAGVLV IALPIPIIVN NFSEFYKEQK RQEKAIKRRE ALERAKRNGS 451 500 ENSP00000430846/1-911 IVSMNLKDAF ARSMELIDVA VEKAGESANT KDSADDNHLS PSRWKWARKA ENSBTAP00000051715/1-911 IVSMNLKDAF ARSMELIDVA VEKTGESANT KGSTDDNHLS PSRWKWARKA ENSTTRP00000004325/1-898 IVSMNLKDAF ARSMELIDVA VEKTGESANT KDSTGDNRLS PSRWKWARKA bmy_02171T0/1-1003 IVSMNLKDAF ARSMELIDVA VEKTGESANT KDSTGDNHLS PSRWKWARKA BACU011141/1-692 IVSMNLKDAF ARSMELIDVA VEKTGESANT KDSTGDNHLS PSRWKWARKA 501 550 ENSP00000430846/1-911 LSETSSNKSF ENKYQEVSQK DSHEQLNNTS SSSPQHLSAQ KLEMLYNEIT ENSBTAP00000051715/1-911 LSETSSNKSY ENKYQEVSQK DSHEQLNNTS SSSPQHLSAQ KLEMLYNEIT ENSTTRP00000004325/1-898 LSETSSNKSY ENKYQEVSQK DSHEQLNNTS SSSPQHLSAQ KLEMLYNEIT bmy_02171T0/1-1003 LSETSSNKSY ENKYQEVSQK DSHEQLNNTS SSSPQHLSAQ KLEMLYNEIT BACU011141/1-692 LSETSSNKSY ENKYQEVSQK DSHEQLNNTS SSSPQHLSAQ KLEMLYNEIT 551 600 ENSP00000430846/1-911 KTQPHSHPNP DCQEKPERPS AYEEEIEMEE VVCPQEQLAV AQTEVIVDMK ENSBTAP00000051715/1-911 KTQPHSHPNP NGQEQAERPS TYEEEIEMEE VVCPQEQLAV AQTEGVVDMK ENSTTRP00000004325/1-898 KTQPHSHPNP ERQQQPERPS AYEEEIEMEE VICPQEQLAV AQAEGIVDMK bmy_02171T0/1-1003 KTQPHSHPNP DCHEQPERPS AYEEEIEMEE VVCPQEQLAV AQTEGIVDMK BACU011141/1-692 KTQPHAHPNP DGHEQPERPS AYEEEIEMEE VVCPQGQLAV AQTEGIVDMK 601 650 ENSP00000430846/1-911 STSSIDSFTS CATDFTETER SPLPPPSASH LQMKFPTDLP GTEEHQRARG ENSBTAP00000051715/1-911 STSSIDSFTS CATDFTETER SPLPPPSASH LQMKFPPDLA GLEEHQRARA ENSTTRP00000004325/1-898 STSSIDSFTS CATDFTETER SPLPPPSACH PQMKFPPDLA RIEEHQRARA bmy_02171T0/1-1003 STSSIDSFTS CATDFTETER SPLPPPCASH LQMKFPPDLA RIEEHQRARG BACU011141/1-692 STSSIDSFTS CATDFTETER SPLPPPSASH LQMKFPPDLA RIEEHQRARG 651 700 ENSP00000430846/1-911 PPFLTLSREK GPAARDGTLE YAPVDITVNL DAS-GSQCGL HSPLQSDNAT ENSBTAP00000051715/1-911 PPFLALIRQK GPTVREATPE YAPIDITVNL DAAGGPQGGP HGPLPTDCAS ENSTTRP00000004325/1-898 PPFLTLTREK MPAARDASPE YAPIDVTVNL DSS-GSQGGP HGPSQSDSAA bmy_02171T0/1-1003 PPFLTLTREK GPAARDASQE YAPIDVTVNL DSS-GSQGGP HGPLQSDSAT BACU011141/1-692 PPFLTLTREK GPAARDASQE YAPIDVTVNL DSS-GSQGGP HGPLQSDSAT 701 750 ENSP00000430846/1-911 DSPKSSLKGS NPLKSRSLKV NFKENRGSAP QTPPSTARPL PVTTADFSLT ENSBTAP00000051715/1-911 ESPKSSLKGS NPLKSRSLKV NFKDSRGGAP PTPPSTARPL PVTAADFPLT ENSTTRP00000004325/1-898 ESPRSSLKGS NPLKSGSLKV NFKDNRGGAP QTPPSTARPL PVTAADFPLT bmy_02171T0/1-1003 ESPKSSLKGS NPLKSRSLKV NFKDNRGGAP QTPPSTARPL PVTTADFPLT BACU011141/1-692 ESPKSSLKGS NPLKSRSLKV NFKDNRGGAP QTPPSTARPL PVTTADFPLG 751 800 ENSP00000430846/1-911 TPQHISTILL EETPSQGDRP LLGTEVSAPC QGPSKGLSPR FPKQKLFPFS ENSBTAP00000051715/1-911 APQLISTILL EETPSQGDRP LLGAEV--HC QGPSKGLTPR FPKQKLFTFS ENSTTRP00000004325/1-898 TPQLISTILL EETPSQGDRP LLGAEVPAHC QGPSKGLTPR FPKQKLFPFS bmy_02171T0/1-1003 APQLISTILL EETPSQGDRP LLGAEVPAHC QGPSKGLTPR FPKQKLFPFS BACU011141/1-692 APQLISTILL EETPSQGDRP LLGAEVPAHC QGPSKGLTPR FPRQKLFAFS 801 850 ENSP00000430846/1-911 SRERRSFTEI DTGDDEDFLE LPGA-REEKQ VDSSPNCFAD KPSDGRDPLR ENSBTAP00000051715/1-911 ARERRSFTEI DTGEDDDFLE LQGTRRPDKQ ADSSPNCLTD KPSDGRDPLR ENSTTRP00000004325/1-898 SRERRSFTEI DTGEDDDFLE LQGTTRQDKQ ADSNPNCFAD KPSDGRDPLR bmy_02171T0/1-1003 SRERRSFTEI DTGEDDDFLE LQGTTRRDKQ ADSNPNCFAD KPSDGRDPLR BACU011141/1-692 SRERRSFTEI DTGEDDDFLE LQGTTRRDKR ADSNPSCFAD KPSDGRDPLR 851 900 ENSP00000430846/1-911 EEGSVGSSSP QDTGHNCRQD IYHAVSEVKK DSSQEGCKME NHLFAPEIHS ENSBTAP00000051715/1-911 EEACVGSSSA QDTSHNCRQD IYHGVAEVKK DNSQEGCKME NHLFAPEIHS ENSTTRP00000004325/1-898 EEASVGASSP QDTSHNCRQD IYHAVAEVKK DTSQEGCKME NHLFAPEIHS bmy_02171T0/1-1003 EEASVGSSSP QDTSHNCRQD IYHAVAEVKQ DNSQEGCKME NHLFAPEIHS BACU011141/1-692 EEASVGSSSP QHTSHNCRQD IYHAVAEVKQ DNSQEGCKME NHLFAPEIHS 901 950 ENSP00000430846/1-911 NPGDTG---- ---------- ---------- YC-------- ---------- ENSBTAP00000051715/1-911 NPGDTG---- ---------- ---------- YC-------- ---------- ENSTTRP00000004325/1-898 NPGDTG---- ---------- ---------- YC-------- ---------- bmy_02171T0/1-1003 NPGDTGKMDT LLTSNTSFVP PWKTHPQFEK YCNFIYYAFQ DYAQFESDER BACU011141/1-692 NPGDTG---- ---------- ---------- YC-------- ---------- 951 1000 ENSP00000430846/1-911 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051715/1-911 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004325/1-898 ---------- ---------- ---------- ---------- ---------- bmy_02171T0/1-1003 ITPLESALMI WASIEKEHDK LHEEIQNLIK IQAIAVCMEN GNFKEAEEVF BACU011141/1-692 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000430846/1-911 ------PTRE TSM------- ---------- ---------- ---------- ENSBTAP00000051715/1-911 ------PTRE TSM------- ---------- ---------- ---------- ENSTTRP00000004325/1-898 ------PTRE TSM------- ---------- ---------- ---------- bmy_02171T0/1-1003 ERIFGDPNSY TPLKRKLLMI ISQKDTFHSF FQHFSYNHMM EKIKSYVNYV BACU011141/1-692 ------PTRE TSM------- ---------- ---------- ---------- 1051 1100 ENSP00000430846/1-911 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051715/1-911 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004325/1-898 ---------- ---------- ---------- ---------- ---------- bmy_02171T0/1-1003 LNEKSSTFLM KAAAKVVESK RARTTASQDK PNSNDIELEA EANLDIGKRS BACU011141/1-692 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000430846/1-911 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051715/1-911 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004325/1-898 ---------- ---------- ---------- ---------- ---------- bmy_02171T0/1-1003 HKNLFLSKLK HGNRQQDVNK KEERVETLQK CGNDIYSGXL AKEFLKNYEA BACU011141/1-692 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000430846/1-911 ----- ENSBTAP00000051715/1-911 ----- ENSTTRP00000004325/1-898 ----- bmy_02171T0/1-1003 LSMTC BACU011141/1-692 -----