KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:16 2014 Check: 00 .. Name: ENSBTAP00000051748/1-631 Len: 687 Check: 5550 Weight: 1.00 Name: ENSP00000294753/1-587 Len: 687 Check: 2421 Weight: 1.00 Name: ENSTTRP00000012881/1-600 Len: 687 Check: 7267 Weight: 1.00 Name: bmy_20707T0/1-362 Len: 687 Check: 4427 Weight: 1.00 Name: BACU004879/1-527 Len: 687 Check: 7889 Weight: 1.00 // 1 50 ENSBTAP00000051748/1-631 ---------- ---------- --CAPESWLQ RKGELPNPES SRRLFRRFCY ENSP00000294753/1-587 MPTALCPRVL APKESEEPRK MRSPPGENPS PQGELPSPES SRRLFRRFRY ENSTTRP00000012881/1-600 ---------- ---------- MRSPPGENPS PQGELPSPES SRRLFRRFCY bmy_20707T0/1-362 ---------- ---------- ---------- ---------- ---------- BACU004879/1-527 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000051748/1-631 QEAAGPREAL HRLWDLCRGW LRPERHTKEQ ILELLVLEQF LAILPREVQG ENSP00000294753/1-587 QEAAGPREAL QRLWDLCGGW LRPERHTKEQ ILELLVLEQF LAILPREIQS ENSTTRP00000012881/1-600 QEAAGPREAL HRLWDLCRGW LRPERHTKEQ ILELLVLEQF LAILPREVQG bmy_20707T0/1-362 ---------- ---------- ---------- ---------- ---------- BACU004879/1-527 ---------- --MWRLCPEC PTSVLPEKAH FVKVSRAKTV TLALKPQDSG 101 150 ENSBTAP00000051748/1-631 WVRA--QEPE SGDQAVSAVE ALEREPGRPW QWINNTLNVQ VIDHWEEFPS ENSP00000294753/1-587 WVRA--QEPE SGEQAVAAVE ALEREPGRPW QWLKHCEDPV VIDDGDSPLD ENSTTRP00000012881/1-600 WVRA--QEPE SGDQAVAAVE ALEREPGRPW QWLKHCEDPV VIDDGDSPPD bmy_20707T0/1-362 ---------- ---------- ---------- ---------- ---------- BACU004879/1-527 LLSSSISGPF QEDLDTEGTS PPSSEKPSLG LQLKHCEDPV VIDDGDSPPD 151 200 ENSBTAP00000051748/1-631 HLPLFAESFA SQKCRQELVR GEKSHENIAE ALDSPGLHEV ESLILIRDPL ENSP00000294753/1-587 Q----EQEQL PVEPHSDLAK NQDAQP--IT LAQCLGLPSR PPSQLSGDPV ENSTTRP00000012881/1-600 Q----EQERL PAEPQSDLAK SQDAQP--MA LPQGPGLPSR LSGQLSGDPV bmy_20707T0/1-362 ---------- ---------- ---------- ---------- ---------- BACU004879/1-527 Q----EQERL PAEPQSDLAK SQDAQP--MA LAQGPGLPSR LSGQLSGDPV 201 250 ENSBTAP00000051748/1-631 HFYKPSWLIC SLPNTQNSSV SVSMGSLGPV SLGIIRNLSQ ---------- ENSP00000294753/1-587 LQDAFLLQEE NVRDTQQ--- -VTTLQLPP- ---------- ---------- ENSTTRP00000012881/1-600 LQDTSLLQEA SLRDAQQ--- -VTALQLPPG FFLFNNNHSS SYSEILGNGK bmy_20707T0/1-362 ---------- ---------- ---------- ---------- ---------- BACU004879/1-527 LQDTSLLQEA SLRDAQQ--- -VTALQLPP- ---------- ---------- 251 300 ENSBTAP00000051748/1-631 ---------- ---NRVSPFK DMIFCFSEED WSLLDPAQTG FYGEFIIGED ENSP00000294753/1-587 ---------- ---SRVSPFK DMILCFSEED WSLLDPAQTG FYGEFIIGED ENSTTRP00000012881/1-600 KARIISAPSH NRANRVSSFK DMIFCFSEED WSLLDPAQTG FYGEFIIGED bmy_20707T0/1-362 ---------- ---------- -MIFCFSEED WSLLDPAQTG FYGEFIIGED BACU004879/1-527 ---------- ---NRVSSFK DMIFCFSEED WSLLDPAQTG FYGEFIIGED 301 350 ENSBTAP00000051748/1-631 CGVSLPPNDA AAQLDLSQGE ENEPRVPELQ DFQVPAVPP- GLLSLGTLSW ENSP00000294753/1-587 YGVSMPPNDL AAQPDLSQGE ENEPRVPELQ DLQGKEVPQV SYLDSPSLQP ENSTTRP00000012881/1-600 CGVSLPPDDP ATQLDLSQGE ENEPRVPELQ DLQGKDVSQV SYADFPSLQP bmy_20707T0/1-362 CGVSLPPNDP AAQLDLSQGE ENEPRVPELQ DLQGKDVSQV SYSDFPSLQP BACU004879/1-527 CGVSLPPNDP AAQLDLSQGE ENEPRVPELQ DLQGKDVSQV SYSDFPSLQP 351 400 ENSBTAP00000051748/1-631 HRADQYSTRH -PHLEQAARA SETVLRESPG LLLDHSLTSL KMPFPGSAAA ENSP00000294753/1-587 FQVEERRKRE ELQVPEFQAC PQTVV----- ---------- ----PQNTYP ENSTTRP00000012881/1-600 FQTEERRKRD EPQVPEFQIC QQTVL----- ---------- ----PPSTCP bmy_20707T0/1-362 FQTEERRKRD EPQVPEFQIC QQTVL----- ---------- ----PQSTCP BACU004879/1-527 FQTEERRKRD EPQVPEFQIC QQTVL----- ---------- ----PQSICP 401 450 ENSBTAP00000051748/1-631 VGKMNFSFSS LERLSKSPAI PGRTHNFPIC TPLFPHNPYL FRHLNSHCTQ ENSP00000294753/1-587 AGG------- ---------- ---------- NPRSLENS-- ---LDEEVTI ENSTTRP00000012881/1-600 AGG------- ---------- ---------- DAPFPDNS-- ---LDEEVTI bmy_20707T0/1-362 AGG------- ---------- ---------- DAPFPDNS-- ---LDEEVTI BACU004879/1-527 AGG------- ---------- ---------- DAPFPDNS-- ---LDEEVTI 451 500 ENSBTAP00000051748/1-631 SPHTCALISG DEDSQLGPYC TDEPRSPTEK QHSLPISHRS GIEAAGEVQT ENSP00000294753/1-587 EIVLSS--SG DEDSQHGPYC TEELGSPTEK QRSLPASHRS STEAGGEVQT ENSTTRP00000012881/1-600 EIVLSS--SG DEDSQLGPYC TDELQSPTEK QHSLPTSHRS GPESGGEVQT bmy_20707T0/1-362 EIVLSS--SG DEDSQLGPYC TDELQSPTEK QHSLPTSHRS GPESGGEVQT BACU004879/1-527 EIVLSS--SG DEDSQLGPYC TDELQSPTEK QHSLPTSHRS GPESGGEVQT 501 550 ENSBTAP00000051748/1-631 SSKKSYVCPN CGKIFRWRVN FIRHLRSRRE QEKPHECSVC GELFSDSEDL ENSP00000294753/1-587 -SKKSYVCPN CGKIFRWRVN FIRHLRSRRE QEKPHECSVC GELFSDSEDL ENSTTRP00000012881/1-600 SSKKSYVCPN CGKIFRWRVN FIRHLRSRRE Q-KPHECSVC GELFSDSEDL bmy_20707T0/1-362 SSKKSYVCPN CGKIFRWRVN FIRHLRSRRE QEKPHECSVC GELFSDSEDL BACU004879/1-527 SSKKSYVCPN CGKIFRWRVN FIRHLRSRRE QEKPHECSVC GELFSDSEDL 551 600 ENSBTAP00000051748/1-631 DGHLETHEVQ KPFRCGACGK SFRLNSHLLS HRRIHLQPDG LELVKKKEQE ENSP00000294753/1-587 DGHLESHEAQ KPYRCGACGK SFRLNSHLLS HRRIHLQPDR LQPVEKREQA ENSTTRP00000012881/1-600 DGHLETHEVQ KPFRCGACGK SFRLNSHLLS HRRIHLQPDR LELLKKREQE bmy_20707T0/1-362 DGHLETHEVQ KPFRCGACGK SFRLNSHLLS HRRIHLQPDR LELLKKREQE BACU004879/1-527 DGHLETHEVQ KPFRCGACGK SFRLNSHLLS HRRIHLQPDR LELLKKREQE 601 650 ENSBTAP00000051748/1-631 ASGTTGGDSD DLLTKGKAKL RCQCCDCGKV FQRPEHLARH RSNIHM-DKS ENSP00000294753/1-587 ASEDADKGPK EPLENGKAKL SFQCCECGKA FQRHDHLARH RSHFHLKDKA ENSTTRP00000012881/1-600 ASGTVGGDSD ALLAKGKAKL RFQCCDCGKV FQRPDQLARH RSSTHV-DKS bmy_20707T0/1-362 ASGTMGGDSD ALLAKGKAKL RFQCCDCGKV FQRPDHLARH RSSTHV-DKS BACU004879/1-527 ASGTMGGDSD ALLAKGKAKL RFQCCDCGKV FQRPDHLARH RSSTHV-DKS 651 700 ENSBTAP00000051748/1-631 QPFQCRYCVK SFSQNSDLLR HQRLHMKRRS K------ ENSP00000294753/1-587 RPFQCRYCVK SFTQNYDLLR HERLHMKRRS KQALNSY ENSTTRP00000012881/1-600 RPFQCRYCVK SFSQNSDLLR HQRLHMKRRS KQALNSY bmy_20707T0/1-362 RPFQCRYCVK SFSQNSDLLR HQRLHMKRRS KQALNSY BACU004879/1-527 RPFQCRYCVK SFSQNSDLLR HQRLHMKRRS KQALNSY