KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:17 2014 Check: 00 .. Name: ENSBTAP00000051776/1-895 Len: 961 Check: 5648 Weight: 1.00 Name: bmy_12053T0/1-595 Len: 961 Check: 7612 Weight: 1.00 Name: ENSP00000255006/1-944 Len: 961 Check: 2885 Weight: 1.00 Name: BACU014858/1-464 Len: 961 Check: 4924 Weight: 1.00 Name: ENSTTRP00000000452/1-941 Len: 961 Check: 3220 Weight: 1.00 // 1 50 ENSBTAP00000051776/1-895 ---------- ---------- ---------- ---------- ---------- bmy_12053T0/1-595 ---------- ---------- ---------- ---------- ---------- ENSP00000255006/1-944 MLDSFSQEST LPFREARKRT SFQPVQVWRN FTASQTTESP ACSGASLGEM BACU014858/1-464 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000452/1-941 VLGSF-QDSA PPFRETKQEA SF---VVWRN FTASPTTESQ ACSRASPREM 51 100 ENSBTAP00000051776/1-895 ---------- ---MSYFRLI DTIASEIGEL KQEMVQTDVS LENGLGPTEA bmy_12053T0/1-595 ---------- ---------- ---------- ---------- ---------- ENSP00000255006/1-944 TAWTMGARGL DKRGSFFKLI DTIASEIGEL KQEMVRTDVN LENGLEPAET BACU014858/1-464 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000452/1-941 SAWTMGARSP EKRGSFFKXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 101 150 ENSBTAP00000051776/1-895 HSMVRHKDDH YSEETDAKTC PRDSGYDSLS NRLSILDRLL HTHPIWLQLS bmy_12053T0/1-595 --MVRHKDDG YSEEKDVKTC PRDSGYDSLS NRLSVLDRLL HTHPIWLQLG ENSP00000255006/1-944 HSMVRHKDGG YSEEEDVKTC ARDSGYDSLS NRLSILDRLL HTHPIWLQLS BACU014858/1-464 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000452/1-941 XXMVRHKDDG YSEEKDVKTC PRDSGYDSLS NRLSILDRLL HTHPIWLQLG 151 200 ENSBTAP00000051776/1-895 LSEEEAAGVL QAQPPGIFLV RKSTKMQKKV LCLRLPCEFG VPLKEFAIKE bmy_12053T0/1-595 LSEDEAAGVL RAQPPGIFLV RKSTKMQKKV LSLRLPCEFG APLKEFAIKE ENSP00000255006/1-944 LSEEEAAEVL QAQPPGIFLV HKSTKMQKKV LSLRLPCEFG APLKEFAIKE BACU014858/1-464 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000452/1-941 LSEDEAAGVL RAQPPGIFLV RKSTKMQKKV LSLRLPCEFG APLKEFAIKE 201 250 ENSBTAP00000051776/1-895 STYTFSLEGS GISFADLFRL IAFYCISRDV LPFTLKLPYA ISTAKTEAQL bmy_12053T0/1-595 STYTFSLEGS GISFADLFRL IAFYCISRDV LPFTLKLPYA ISTAKTEAQL ENSP00000255006/1-944 STYTFSLEGS GISFADLFRL IAFYCISRDV LPFTLKLPYA ISTAKSEAQL BACU014858/1-464 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000452/1-941 STYTFSLEGS GISFADLFRL IAFYCISRDV LPFTLKLPYA ISTAKTEAQL 251 300 ENSBTAP00000051776/1-895 EELAQLGLNF WSSPADNKPP NPPPPHRPPS SDGGDDGVSP ASSRQLCLIN bmy_12053T0/1-595 EELAQLGLNF WSSPADNKPP NPPPPHRPLS S----DGVGP AS-RQLCLIN ENSP00000255006/1-944 EELAQMGLNF WSSPADSKPP NLPPPHRPLS S----DGVCP ASLRQLCLIN BACU014858/1-464 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000452/1-941 EELAQLGLNF WSSPADNKPP NPPPPHRPLS S----DGVGP AS-RQLCLIN 301 350 ENSBTAP00000051776/1-895 GVHSIKTRTP SELECSQTNG ALCFINPLFF KVHSQDLGGG PRRPCTRT-P bmy_12053T0/1-595 GVHSIKTRTP SELECSQTNG ALCFINPLFF KVHSQEIGGG PKRPCTRTPP ENSP00000255006/1-944 GVHSIKTRTP SELECSQTNG ALCFINPLFL KVHSQDLSGG LKRPSTRT-P BACU014858/1-464 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000452/1-941 GVHSIKTRTP SELECSQTNG ALCFINPLFF KVHSQELGGG PKRPCTRTPP 351 400 ENSBTAP00000051776/1-895 DADGTERPRS PPPRPPPPAI HSQPAGPQLA GPVAPPAGMP ETVALHQPGD bmy_12053T0/1-595 DANGTERPRS PPPRPPPPAI NSVHGSPQLS GPAA-PASMP ETVAHHQHGD ENSP00000255006/1-944 NANGTERTRS PPPRPPPPAI NSLHTSPRLA RTET-QTSMP ETVNHNKHGN BACU014858/1-464 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000452/1-941 DANGTDRPRS PPPRPPPPAI NSVHGSPQLS GPAA-AASMP ETVAHHQHGD 401 450 ENSBTAP00000051776/1-895 AARLGTKPTP VPPPRLKKQA SFLEAEGGAK TLTGGRP--R PEPAAGPAGG bmy_12053T0/1-595 GARLGAKPTP VPPPRLKKQA SSLEAEGGAK TLIGGRP--R PEPAAGPAGG ENSP00000255006/1-944 VALPGTKPTP IPPPRLKKQA SFLEAEGGAK TLSGGRPGAG PELELGTAGS BACU014858/1-464 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000452/1-941 GARLGAKPTP VPPPRLKKQA SFLEAEGGAK TLIGGPP--R PEPAAGPAGG 451 500 ENSBTAP00000051776/1-895 AGGGSAPAET EAEAVLASGD CARARRAAAS ASASRAPWRA GRQRLSDMSL bmy_12053T0/1-595 AGGAPAAAVE AVEEEEAPRD CTRARPAAAP ASPSRPPWRG GRQRLSDMSI ENSP00000255006/1-944 PGGAPP---- ----EAAPGD CTRAPP---P SSESRPPCHG GRQRLSDMSI BACU014858/1-464 ---------- ---------- ---------- ---------- -------MSI ENSTTRP00000000452/1-941 AGGAPA---- ----EEAPRD CTRARPAAAP ASPSRAPWRG GRQRLSDMSI 501 550 ENSBTAP00000051776/1-895 STSSSDSLDL DRSMPLFGYE ADTNSSLEDY DGESDQETMA PPIKSKKKRN bmy_12053T0/1-595 STSSSDSLDL DRSMPLFGYE ADTNSSLEDY DVESDQETMA PPIKSKKKRN ENSP00000255006/1-944 STSSSDSLEF DRSMPLFGYE ADTNSSLEDY EGESDQETMA PPIKSKKKRS BACU014858/1-464 STSSSDSLDL DRSMPLFGYE ADTNSSLEDY DVESDQETMA PPIKSKKKRN ENSTTRP00000000452/1-941 STSSSDSLDL DRSMPLFGYE ADTNSSLEDY DVESDQETMA PPIKSKKKRN 551 600 ENSBTAP00000051776/1-895 SSFVLPKLVK SQGRHMKGVF SKLCSPDGRI RRRETQLVRP KGKHIGVMYS bmy_12053T0/1-595 SSFVLPKLVK SQLRKMSGVF SSFLTPEKRM VRRIAELARD KRTYFGCLVQ ENSP00000255006/1-944 SSFVLPKLVK SQLQKVSGVF SSFMTPEKRM VRRIAELSRD KCTYFGCLVQ BACU014858/1-464 SSFVLPKLVK SQLRKMSGVF SSFLTPEKRM VRRIAELARD KRTYFGCLVQ ENSTTRP00000000452/1-941 SSFVLPKLVK SQLRKMSGVF SSFLTPEKRM VRRIAELARD KRTYFGCLVQ 601 650 ENSBTAP00000051776/1-895 LYLLKICEDG EGHVSTTGLK QTIRHLQVSV SLYLSKRDPP NPGIEPRSPT bmy_12053T0/1-595 DYVSFLQENK ECHVSSTDLL QTVRQFMTQA GGL------- ---------- ENSP00000255006/1-944 DYVSFLQENK ECHVSSTDML QTIRQFMTQV KNYLSQSSEL DPPIESLIPE BACU014858/1-464 DYVSFLQENK ECHVSSTDLL QTVRQFMTQV KNYLSQSSEL DPPIESLIPE ENSTTRP00000000452/1-941 DYVSFLQENK ECHVSSTDLL QTVRQFMTQV KNYLSQSSEL DPPIESLIPE 651 700 ENSBTAP00000051776/1-895 PQADVVLEKA MHKCILKPLK GHIEAMLKHF HVADGSWKQL KENLQLVRQR bmy_12053T0/1-595 ---------- --RCF----- ---------- -----GW--- ---------- ENSP00000255006/1-944 DQIDVVLEKA MHKCILKPLK GHVEAMLKDF HMADGSWKQL KENLQLVRQR BACU014858/1-464 DQIDVVLEKA MHKCILKPLK GHVEAMLKHF HVADGSWKQL KENLQLVRQR ENSTTRP00000000452/1-941 DQIDVVLEKA MHKCILKPLK GHVEAMLKHF HVADGSWKQL KENLQLVRQR 701 750 ENSBTAP00000051776/1-895 NPQELGVFAP TPDFVDVEKI KVKFMTMQKM YSPEKKVMLL LRVCKLIYTV bmy_12053T0/1-595 ---------- ---------- EVPFLP---- ---------- ---------- ENSP00000255006/1-944 NPQELGVFAP TPDFVDVEKI KVKFMTMQKM YSPEKKVMLL LRVCKLIYTV BACU014858/1-464 NPQELGVFAP TPDFVDVEKI KVKFMTMQKM YSPEKKVMLL LRVCKLIYTV ENSTTRP00000000452/1-941 NPQELGVFAP TPDFVDVEKI KVKFMTMQKM YSPEKKVMLL LRVCKLIYTV 751 800 ENSBTAP00000051776/1-895 MENNSGRMYG ADDFLPVLTY VIAQCDMLEL DTEVEYMMEL LDPSLLHGEG bmy_12053T0/1-595 --SEEGRAHG VQ-------- ---------- ---------- ------LGE- ENSP00000255006/1-944 MENNSGRMYG ADDFLPVLTY VIAQCDMLEL DTEIEYMMEL LDPSLLHGEG BACU014858/1-464 MENNSGRMYG ADDFLPVLTY VIAQCDMLEL DTEIEYMMEL LDPSLLHGEG ENSTTRP00000000452/1-941 MENNSGRMYG ADDFLPVLTY VIAQCDMLEL DTEIEYMMEL LDPSLLHGEG 801 850 ENSBTAP00000051776/1-895 GYYLTSAYGA LSLIKNFQEE QAARLLSSEA RDTLRQWHKR RTTTRTVPSV bmy_12053T0/1-595 ---------- ------FPQG TSP---SSAE HDSI------ ---------- ENSP00000255006/1-944 GYYLTSAYGA LSLIKNFQEE QAARLLSSET RDTLRQWHKR RTTNRTIPSV BACU014858/1-464 GYYLTSAYGA LSLIKNFQEE QAARLLSSEA RDTLRQWHKR RTTNRTIPSV ENSTTRP00000000452/1-941 GYYLTSAYGA LSLIKNFQEE QAARLLSSEA RDTLRQWHKR RTTNRTIPSV 851 900 ENSBTAP00000051776/1-895 DDFQNYLRVA FQEVNSGCTG KTLLVRPYVT TEDVCQLCAE KFKVAEPQEY bmy_12053T0/1-595 ---------- ---------- QSPLGPP--- ------PCPP S--------- ENSP00000255006/1-944 DDFQNYLRVA FQEVNSGCTG KTLLVRPYIT TEDVCQICAE KFKVGDPEEY BACU014858/1-464 DDFQNYLRVA FQDVNSGCTG KTLLVRPYVT TEDVCQLCAE KFKVADPEEY ENSTTRP00000000452/1-941 DDFQNYLRVA FQDVNSGCTG KTLLVRPYVT TEDVCQLCAE KFKVADPEEY 901 950 ENSBTAP00000051776/1-895 SLFLFVDETW QQLAEDTYPQ KIKAELHSRP QPHVFHFVYK RIKKDPYGII bmy_12053T0/1-595 ---------- --------PQ RVTALLAS-- --------HH RIQR-----L ENSP00000255006/1-944 SLFLFVDETW QQLAEDTYPQ KIKAELHSRP QPHIFHFVYK RIKNDPYGII BACU014858/1-464 SLFLFVDETW QQLAEDTYPQ KIKAELHSRP QSHVFHFVYK RIKKDPYGVI ENSTTRP00000000452/1-941 SLFLFVDETW QQLAEDTYPQ KIKAELHSRP QSHVFHFVYK RIKKDPYGVI 951 1000 ENSBTAP00000051776/1-895 FQNGEEDLST S bmy_12053T0/1-595 TLKG------ - ENSP00000255006/1-944 FQNGEEDLTT S BACU014858/1-464 FQNGEEELTA S ENSTTRP00000000452/1-941 FQNGEEELTA S