KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:01:18 2014 Check: 00 .. Name: bmy_12822T0/1-965 Len: 1065 Check: 6312 Weight: 1.00 Name: ENSBTAP00000051793/1-779 Len: 1065 Check: 658 Weight: 1.00 Name: ENSP00000327763/1-655 Len: 1065 Check: 7279 Weight: 1.00 Name: ENSTTRP00000014925/1-530 Len: 1065 Check: 1347 Weight: 1.00 // 1 50 bmy_12822T0/1-965 MNSQKKRKDM EPACTWSLLS EQK------- ---------- ---------- ENSBTAP00000051793/1-779 ---------- ---------- ---------- ---------- ---------- ENSP00000327763/1-655 -MAMAKARKP REALLWALSD LEENDFKKLK FYLRDMTLSE GQPPLARGEL ENSTTRP00000014925/1-530 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_12822T0/1-965 ---------- ---------- ---------- ---------- -------DYR ENSBTAP00000051793/1-779 ---------- ---------- ---------- ---------- ---------- ENSP00000327763/1-655 EGLIPVDLAE LLISKYGEKE AVKVVLKGLK VMNLLELVDQ LSHICLHDYR ENSTTRP00000014925/1-530 ---------- ---------- ---------- ---------- --------YG 101 150 bmy_12822T0/1-965 KVFRKHLK-- EKYLKKGVDK CYHHGKHIES RLLVVKEHCI SEKPPCGIP- ENSBTAP00000051793/1-779 ---------- ---------- ---------- ---------- ---------- ENSP00000327763/1-655 EVYREHVRCL EEWQEAGVN- ----GRYNQV LLVAKPSSES PESLACPFPE ENSTTRP00000014925/1-530 EMYREHVHGL EERQEGGI-- ----GGYNQL LLVATPSSGS PASPVCPSP- 151 200 bmy_12822T0/1-965 QQNNFIEMEH IFDPDEEGSS LSQTVVLQGC AGIGKTAVVH KFMFDWAAGM ENSBTAP00000051793/1-779 ---------- ---------- ---------- ---------- --MFDWAAGV ENSP00000327763/1-655 QELESVTVEA LFDSGEKPSL APSLVVLQGS AGTGKTTLAR KMVLDWATGT ENSTTRP00000014925/1-530 --LDSVTVEA LLDPGGKSSQ VPPIVVLQGS AGMGKTTLAR K-VLDWTTGT 201 250 bmy_12822T0/1-965 VTPGRFDYLI YVNCREISRF ANLSAADLIT NTFQDIDGPI LDVILVYPEK ENSBTAP00000051793/1-779 VTPGRFDYVI YINCREM-RF ANLSGADLIN NTFQDTGGPI MDIILVYPEK ENSP00000327763/1-655 LYPGRFDYVF YVSCKEVVLL LESKLEQLLF WCCGDNQAPV TE-ILRQPER ENSTTRP00000014925/1-530 LYPGQLDDVF YVSCREVVLL PEGRLDQLLF WRCGENQAPI TE-TLRQLEW 251 300 bmy_12822T0/1-965 LLFILDGFPE LQYPVGDQEE DLSANPLERK PVETLLCSFV RKKLFPESSL ENSBTAP00000051793/1-779 LLFILDGFPE LQYSVSDQEE DLSTNPLERK PVETLLHSFM KTKLFLESSL ENSP00000327763/1-655 LLFILDGFDE LQRPFEEKLK KRGLS----- PKESLLHLLI RRHTLPTCSL ENSTTRP00000014925/1-530 LLFILDDCDE LQRPFAERVT TPRSS----- PTEDVLHFLL GRNACSQVRL 301 350 bmy_12822T0/1-965 LITARPTAMK KLHSLLKQAT QAEILWFTDA EKRAYFLSQF SGANAAMRVF ENSBTAP00000051793/1-779 LITAQPMTMK KLHSLLKQP- --EILWFTDV EKRAYFLSQF SGANVATRVL ENSP00000327763/1-655 LITTRPLALR NLEPLLKQAR HVHILGFSEE ERARYFSSYF TDEKQADRAF ENSTTRP00000014925/1-530 LVTTRVLAL- NLESLLREPP HVHI---EKP ERRRYFNSYF TDKEQARNAL 351 400 bmy_12822T0/1-965 YGLRENEGLD IMSSLPIISW MICSVLQSQG DGDRTLMRSL QTMTDVYLFY ENSBTAP00000051793/1-779 YDLRENEGLD ITSSLPITSW ---------E DGGRTLTRSR QTMTDTYLVL ENSP00000327763/1-655 DIVQKNDILY KACQVPGICW VVCSWLQGQM ERGKVVLETP RNSTDIFMAY ENSTTRP00000014925/1-530 DIVQRNDVLY KACQVPGICC VVCSWLKGQM EQGREVLEMP GNCTDIFTAY 401 450 bmy_12822T0/1-965 FSKCLKT--L TGISVWKGQS CLWGLCSLAA EGLQNQQVLF EISDLRRHGI ENSBTAP00000051793/1-779 LFQLSQH--P --------YK NLGGLCSLAV EALQNQQVLF EVSDLRRHGI ENSP00000327763/1-655 VSTFLPPDDD GGCSELSRHR VLRSLCSLAA EGIQHQRFLF EEAELRKHNL ENSTTRP00000014925/1-530 VSTFLPHSAP GVCSEPTRDK VLR-LCPLAA EGI-----VF EEGDVRKHSL 451 500 bmy_12822T0/1-965 GVYDTNCTFL NHFLKKVEGG VSV-----YT FLHFSFQEFL TAVFYXLKND ENSBTAP00000051793/1-779 GVYDTNCTFL NHFLKKVEV- VGV-----YT FLHFSFQEFL TAVFYTLKND ENSP00000327763/1-655 -----DGPRL AAFLSSNDYQ LGLAIKKFYS FRHISFQDFF HAMSYLVKED ENSTTRP00000014925/1-530 -----DGLSL AAFVSSNSYQ EGLDIKK-YS FYRISLE-FF HAMSYLVEED 501 550 bmy_12822T0/1-965 SSWMF--FDQ VGKTWQEIF- --QQYGKGFS SLTIQFLFGL LHKGKGKSVE ENSBTAP00000051793/1-779 SSWMF--FDQ VGKTWQEIF- --QQYEKGFS SLTIQFLFGL LHKGKEKAVL ENSP00000327763/1-655 QSRL---GKE SRREVQRLLE VKEQEGNDEM TLTMQFLLDI SKKDSFSNLE ENSTTRP00000014925/1-530 RSQLAGGGGE CCREVNRLLD EKKQTGGEAM ALSMQFLLDI SKKEGSSNWE 551 600 bmy_12822T0/1-965 TTFGRKVSPG LREELLKWTE KEIKDKSSRL QIEPMDLFHC LYEIQEEEYA ENSBTAP00000051793/1-779 TTFGKKVSPG LQEELLKWTE KEIKDKPYRL QIEPMDLFHC LYDTQEEEYA ENSP00000327763/1-655 LKFCFRISPC LAQDL----- -----KHFKE QMESMKHNRT -WDLEFSLYE ENSTTRP00000014925/1-530 LKFCLKISPS IKQDL----- -----KCLKE RVDSIKHFRT -WDLEFSLYG 601 650 bmy_12822T0/1-965 KRIIDDL-GS IILLQPTYTK MDILAMSFCV KSSHSHLSVS LKCQHLLGFE ENSBTAP00000051793/1-779 KRIINDLRSA LIVSHNIWLR MG--HMSHCC KSSKNAQVLC VRGSVRAHAQ ENSP00000327763/1-655 AKIKNLVKG- -IQMNNVSFK IK----HSNE KKSQSQNLFS VKSSLSHGPK ENSTTRP00000014925/1-530 SKVKGLIKG- -VRMSDVSFK ME----HFSE KKFHRRNSFS VKISLSNG-- 651 700 bmy_12822T0/1-965 EEDRASAFMP PTLILNQPFQ LHNLPVSPLH LLCQALRNPY CKVKDLKLIF ENSBTAP00000051793/1-779 ERARACV--- ---------- -----GACVH TYVSVILDKG VE-------- ENSP00000327763/1-655 EEQKCPS--- ---------- ---------- ---------- ---------- ENSTTRP00000014925/1-530 QEKKCPI--- ---------- ---------- ---------- ---------- 701 750 bmy_12822T0/1-965 CHLTASYGRD LALVFETNQY LTDLEFVKNT LEDSGMKLLC EGLKQPNCIL ENSBTAP00000051793/1-779 ---ASSYGRD LALVFETNQY LTDLVFVKNT LEDSGVKLLC EGLKQPNCVV ENSP00000327763/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014925/1-530 ---------- ---------- ---------- ---------- ---------- 751 800 bmy_12822T0/1-965 QTLRLYRCLI SPASCGALAA VLSTNQWLTE LEFSETKLEA SALKLLCEGL ENSBTAP00000051793/1-779 KVQPLEICLI SPASCGYLAS VLICNPNLTE LDLSENPLGD TGVKFLCEGL ENSP00000327763/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014925/1-530 ---------- ---------- ---------- ---------- ---------- 801 850 bmy_12822T0/1-965 KDPNCKVQKL N--------- -CVELSSFLQ VSQTLKELFV FANALGDTGV ENSBTAP00000051793/1-779 RHLNCKVEKQ DLNTCYLTDA SCVYLFSLLQ VSQTLKELFV FANSLRDTGV ENSP00000327763/1-655 ---------- ---------- ---------- ---------- ---------V ENSTTRP00000014925/1-530 ---------- ---------- ---------- ---------- ---------V 851 900 bmy_12822T0/1-965 QRLCEGLRHA DGIIENLVLS ECSLSAACCE SLAQVLSSTR SLTRLLLINN ENSBTAP00000051793/1-779 QHLCEGLCHV NSIIKNLVLS ECSLSPACCE SLTQVLSSTW SLTRLLLINN ENSP00000327763/1-655 HGQKEGKDNI AGTQKEASTG K--------- ---------- ---------- ENSTTRP00000014925/1-530 -----GKSNR AGIQKSASSG K--------- ---------- ---------- 901 950 bmy_12822T0/1-965 KIEDLGLKLL CEGLKQPDCQ LKDLALWTCH LTGECCQDLC NALYTNEHLR ENSBTAP00000051793/1-779 KIGDLGLKLL CEGLKQPDCQ LKDLVLWTCH LIGECCQDSC NALYTNEHLR ENSP00000327763/1-655 ---------- ---------- ---------- --GRGTEETP KNTYI----- ENSTTRP00000014925/1-530 ---------- ---------- ---------- --GRGTEE-- ---------- 951 1000 bmy_12822T0/1-965 VLDLSDNALG DEGMQVLCEG LKHPSCKLQT LWLAECHLTD ACCGALASVL ENSBTAP00000051793/1-779 VLELSDSALG DEGMQVPCEG LKHPSCKLQT LGLAECHFTG ACCGALTSVL ENSP00000327763/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014925/1-530 ---------- ---------- ---------- ---------- ---------- 1001 1050 bmy_12822T0/1-965 NRNENLTLLD LSGNDLKDFG VQMLCDALIH PICKLQTFYI DTDHLHEETF ENSBTAP00000051793/1-779 SRNENLTLLD LSGNHLKDFG VQMLCDALLH AICKLQ---- ---------- ENSP00000327763/1-655 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014925/1-530 ---------- ---------- ---------- ---------- ---------- 1051 1100 bmy_12822T0/1-965 RKIEALKMSK PGITW ENSBTAP00000051793/1-779 ---------- ----- ENSP00000327763/1-655 ---------- ----- ENSTTRP00000014925/1-530 ---------- -----