KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:21 2014 Check: 00 .. Name: bmy_08382T0/1-277 Len: 279 Check: 8113 Weight: 1.00 Name: ENSP00000304376/1-203 Len: 279 Check: 8921 Weight: 1.00 Name: ENSBTAP00000051902/1-205 Len: 279 Check: 4660 Weight: 1.00 Name: BACU002874/1-203 Len: 279 Check: 7994 Weight: 1.00 Name: ENSTTRP00000009070/1-203 Len: 279 Check: 8138 Weight: 1.00 // 1 50 bmy_08382T0/1-277 MSGQRVDVKV VMLGKEYVGK TSLVERYVHD RFLVGPYQNT IGAAFVAKVM ENSP00000304376/1-203 MSGQRVDVKV VMLGKEYVGK TSLVERYVHD RFLVGPYQNT IGAAFVAKVM ENSBTAP00000051902/1-205 MSGQRVDVKV VMLGKEYVGK TSLVERYVHD RFLVGPYQNT IGAAFVAKVM BACU002874/1-203 MSGQRVDVKV VMLGKEYVGK TSLVERYVHD RFLVGPYQNT IGAAFVAKVM ENSTTRP00000009070/1-203 MSGQRVDVKV VMLGKEYVGK TSLVERYVHD RFLVGPYQNT IGAAFVANVM 51 100 bmy_08382T0/1-277 SVGDRTVTLG IWDTAGSERY EAMSRIYYRG AKAAIVCY-- DLTDSSSFER ENSP00000304376/1-203 SVGDRTVTLG IWDTAGSERY EAMSRIYYRG AKAAIVCY-- DLTDSSSFER ENSBTAP00000051902/1-205 SVGDRTVTLG IWDTAGSERY EAMSRIYYRG AKAAIVCYDQ DLTDSSSFER BACU002874/1-203 SVGDRTVTLG IWDTAGSERY EAMSRIYYRG AKAAIVCY-- DLTDSSSFER ENSTTRP00000009070/1-203 SVGDRTVTLG IWDTAGSERY EAMSRIYYRG AKAAIVCY-- DLTDSSSFER 101 150 bmy_08382T0/1-277 AKFWVKELRN LEEGCKIYLC GTKSDLLEED RRRRRVDFHD VQDYADNIKA ENSP00000304376/1-203 AKFWVKELRS LEEGCQIYLC GTKSDLLEED RRRRRVDFHD VQDYADNIKA ENSBTAP00000051902/1-205 AKFWVKELRN QEEGCQIYLC GTKSDLLEED RRRRRVDFHD VQDYADNIKA BACU002874/1-203 AKFWVKELRN LEEGCKIYLC GTKSDLLEED RRRRRVDFHD VQDYADNIKA ENSTTRP00000009070/1-203 AKFWVKELRN LEEGCKIYLC GTKSDLLEED RRRRRVDFHD VQDYADNIKA 151 200 bmy_08382T0/1-277 QLFETSSKTG QSVDELFQKV AEDYVSVAAF QRTRAWTWAR RQTPTSTAVV ENSP00000304376/1-203 QLFETSSKTG QSVDELFQKV AEDYVSVAAF Q--------- ---------V ENSBTAP00000051902/1-205 QLFETSSKTG QSVDELFQKV AEDYVSVAAF Q--------- ---------V BACU002874/1-203 QLFETSSKTG QSVDELFQKV AEDYVSVAAF Q--------- ---------V ENSTTRP00000009070/1-203 QLFETSSKTG QSVDELFQKV AEDYVSVAAF Q--------- ---------V 201 250 bmy_08382T0/1-277 ITESPLTWPG GIKGIPPERL DLAFVWAWGK LPGPDFLPAT VLTRQPGSPA ENSP00000304376/1-203 MTED------ --KGV----- DL------GQ KPNPYFYSC- ---------- ENSBTAP00000051902/1-205 MTED------ --KGV----- DL------GQ KANPYFYSC- ---------- BACU002874/1-203 MTED------ --KGV----- DL------GQ KANPYFYSC- ---------- ENSTTRP00000009070/1-203 MTED------ --KGV----- DL------GQ KANPYFYSC- ---------- 251 300 bmy_08382T0/1-277 PVSRRCQAWK RIADALHALT VVWGGGCKE ENSP00000304376/1-203 ---------- ---------- ------CHH ENSBTAP00000051902/1-205 ---------- ---------- ------CHH BACU002874/1-203 ---------- ---------- ------CHH ENSTTRP00000009070/1-203 ---------- ---------- ------CHH