KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:22 2014 Check: 00 .. Name: ENSP00000292779/1-613 Len: 796 Check: 6979 Weight: 1.00 Name: ENSTTRP00000015855/1-466 Len: 796 Check: 8930 Weight: 1.00 Name: ENSBTAP00000051906/1-364 Len: 796 Check: 1969 Weight: 1.00 Name: bmy_14722T0/1-545 Len: 796 Check: 8833 Weight: 1.00 Name: BACU017133/1-786 Len: 796 Check: 1144 Weight: 1.00 // 1 50 ENSP00000292779/1-613 MARCRHHSGY LADDEASHSM CSARVQLPKK PLVPEMRPAC KPGRVPHPPS ENSTTRP00000015855/1-466 -TSCRHHSGY LADDEAGHTT CVARVQPPKK SLFPEMGQAS KLGHTPHPTS ENSBTAP00000051906/1-364 MASCRHHSGY LADDEAGHPT YVARVQPPKK SLFSEMGHAS KPGHRPHPPS bmy_14722T0/1-545 MTSCRHHSGY LADDEAGHTT YVARVQPPKK SLFPEMGQAS KLGHTPHPTS BACU017133/1-786 MTSCRHHSGY LADDEAGHTT YVARVQPPKK SLFPEMGQAS KLGHTPHPTS 51 100 ENSP00000292779/1-613 TCGSSALQG- --QRRNKRHP QPFGHFLDFL TESQVLDSLE TVVEKATERM ENSTTRP00000015855/1-466 THGPSAVQGS RSHRRNPKGP RPFRSFLDFL VEGQVLDSLQ TVVEEATELM ENSBTAP00000051906/1-364 SHDPSGSSG- --RCRNRQGP RPFRSFLDFL VEGQVLESLQ TVVEEATERM bmy_14722T0/1-545 MHGPSGSSGL RSHHRNPKGP RPFRSFLDFL VEGQVLDSLQ TVVEEATERM BACU017133/1-786 MHGPSGSSGL RSHRRNPKGP RPFRSFLDFL VEGQVLDSLQ TVVEEATERM 101 150 ENSP00000292779/1-613 AAMKTEAGVP LVEVQDPVEV PSGGRRAHAR PSLSTVHRHR VRPTLCTGHP ENSTTRP00000015855/1-466 ATVMTEAGVP LVEVEDPMEV PRGGRQARAR PIVSTVHQHC TRPSLCMGRP ENSBTAP00000051906/1-364 ATVKTEAGVP LVEVQDPVEV PRGGRRARAR PSLSTLRRHR ARPGLCVGRP bmy_14722T0/1-545 ATVKTEAGVP LVEVEDPMEV PRGGRRARAR PILSTVHQHC TRPSLCMGRP BACU017133/1-786 ATVKTEAGVP LVEVEDPMEV PRCGRRARAR PILRTVHQRC TRPSLCLGRP 151 200 ENSP00000292779/1-613 NNYPSSSSSM SNCHSSLM-A GCLGSHSRDS DLGAQ--GSL PPVRDKLLLE ENSTTRP00000015855/1-466 NNYPSCSSSM SDSHSSFT-A NWPGSHSWDS DLSARSLGAL PPMKDKLLLE ENSBTAP00000051906/1-364 NNYPSRSSSM SDSRSSCTAA DWPGCHSRDS DLGSQGLGRL PPVTDQLLLE bmy_14722T0/1-545 NNYPSCSSSM SDSHSSFT-A NWPGSHSWDS DLGARSLGAL PPMKDKLLLE BACU017133/1-786 NNYPSCSSSM SDSHSSFT-A NWPGSHSWDS NLGARSLGAL PPMKDKLLLE 201 250 ENSP00000292779/1-613 KNLKRLLQLE REGKGLSQSC SQRDSLLWDS LGSQTSFQWT QEQPLSWFSG ENSTTRP00000015855/1-466 KNLKRLLQLE NRGKGQGQSC PHGDSLPWDS LGSQTSSQWT LEQPLSWFSG ENSBTAP00000051906/1-364 KSLKRLLQLE NRGRGLGQAS SHGDSLLWDS LDSQSSTQWT VEQPLSWFSG bmy_14722T0/1-545 KNLKRLLHLE NRRKGLGQSC PHGDSLPWDS LGSQTSSQWT LEQPLSWFSG BACU017133/1-786 KNLKRLLQLE NRRKGLGQSC PHGDSLPWDS LGSQTSSQWT LEQPLSWFSG 251 300 ENSP00000292779/1-613 LLGSSSGVPE ASEPRPGEQE PIFRKREFNK EIKSLLSQLE SLDLPGYCPL ENSTTRP00000015855/1-466 LLGSSSGTPK AWELGPAERE LIFLKRELNK KMKSLLSQPX XXXXXXXXXX ENSBTAP00000051906/1-364 PLGSSWDTHE SSELGPTERE LGFLRRQLNK EMRSLLSQPA SFELPGYSTL bmy_14722T0/1-545 LLGSSSGTPE ASELGPAERE LIFLKRELNK EMKSLLSQPG SFDLPGYCAL BACU017133/1-786 LLGSSSGTPE ASEVGPAERE LIFLKRELNK EMKSLLSQPG SFDLPGYCAL 301 350 ENSP00000292779/1-613 REPHRTLNFL ADHRLFPALQ SVVSQAVDKL RGAHCRDGRP LFPTSLEPTS ENSTTRP00000015855/1-466 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000051906/1-364 REPHRTLDFL AEHHLFPALQ NVVNRAVEKL SGARRRDGGP LFPSEWETA- bmy_14722T0/1-545 REPHRTLDFL AEHHLFPALQ DVVSQAVDKL SGACRRDGCP LFPSEWEPS- BACU017133/1-786 REPHRTLDFL AEHHLFPALQ DVVNQAVDKL SGACRRDGCP LFPSEWEPS- 351 400 ENSP00000292779/1-613 DLPPLGSEPA KPTNGGQPYA SPRPTVSSPK MLQRKR---- ---KDRGGSP ENSTTRP00000015855/1-466 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000051906/1-364 --RESDSKVA TPTDGEELYE ---------- ---------- ---------- bmy_14722T0/1-545 --PESSSKLA TPTDGKEPYD LLPTTASSPR MEHRKSIKYR GRGKAKEGGS BACU017133/1-786 --PESSSKLA TPIDGEEPYD LLPTTTSSPR MEHRKSIKYR GRGKAKEGGS 401 450 ENSP00000292779/1-613 SMSSAQVATR FKLK------ ---------- ---------- ---------- ENSTTRP00000015855/1-466 XXXXX----- ---------- ---------- ---------- ---------- ENSBTAP00000051906/1-364 ---------- ---------- ---------- ---------- ---------- bmy_14722T0/1-545 PVSNTQVATR FRLEVTPTEE PKVPSPHPRQ EGLDQDPKVR RLPMPTSG-- BACU017133/1-786 PVSSTQVATR FRLEVTPTEE PKVPSPYLRQ EGLDQDPKVR RLPMPTSGPL 451 500 ENSP00000292779/1-613 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015855/1-466 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051906/1-364 ---------- ---------- ---------- ---------- ---------- bmy_14722T0/1-545 ---------- ---------- ---------- ---------- ---------- BACU017133/1-786 SSSQRAQPWR SLHLTLPATG IVVKVPSRQT HVTTPVSAPL ASSLPSSSHH 501 550 ENSP00000292779/1-613 ---------- ---------- --SPCSSSRF TKKKPLPSIS SKSS-MSHFS ENSTTRP00000015855/1-466 ---------- ---------- --XXSPNYKF TKKKTLPSIL SKSTTMSRLS ENSBTAP00000051906/1-364 ---------- ---------- ---------- ---------- ---------- bmy_14722T0/1-545 ---------- ---------- --PLSSSQRA QPWRSLHLTL PATGIVVKVP BACU017133/1-786 LPRFSPHTSV VRGFLPSPAV PYPESPSYKF TKKKTLPSIL SKSTTMSRLS 551 600 ENSP00000292779/1-613 NRLYEELADF LTQQAASLVI RKY---EFEK DLSKQLGFFS FPITHVLRDL ENSTTRP00000015855/1-466 NPRHEELVDY LKGQAVSLLA C-Y---RFER --LTQLGFIP I--------- ENSBTAP00000051906/1-364 ---------- ---------- ---------- ---------- ---------- bmy_14722T0/1-545 SRQTHVTTPV SAPLASSLPS SSHRLPRFSP HTSVVRGFLP SP-------- BACU017133/1-786 NPWHEELVDY LKGQAVSLLA CKY---RFEK NLTGQLGFIS FPITEALLDL 601 650 ENSP00000292779/1-613 SLGLKKVKGS RIH---LSSE THRSCLLRKL EE-------- SKRARQASRL ENSTTRP00000015855/1-466 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051906/1-364 ---------- ---------- ---------- ---------- ---------- bmy_14722T0/1-545 AVPYPEVTSS RLGPGVLGTG LQWKGSYRHX S--------- ---------- BACU017133/1-786 FLGFRKVKGS RIR---LSST IDWSCLLRRL EEAEFSQWSP QRASRHTSQH 651 700 ENSP00000292779/1-613 STSHCSTETP SVQQEPATHT AQDQATEPCR SLYTNLPASR QLS------- ENSTTRP00000015855/1-466 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051906/1-364 ---------- ---------- ---------- ---------- ---------- bmy_14722T0/1-545 ---------- ---------- ---------- ---------- ---------- BACU017133/1-786 STPQRSMRTP TAPSELAART HRVQEEPTGS RLNMRSPGPR PLASQEHPAA 701 750 ENSP00000292779/1-613 -------PLE PKLYMSACTG MGSSPPKSKD MDNEGRDKAE IEDEDEDEFK ENSTTRP00000015855/1-466 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000051906/1-364 ---------- ---------- ---------- ---------- ---------- bmy_14722T0/1-545 ---------- ---------- ---------- ---------- ---------- BACU017133/1-786 AEQEPTRPPE PKLFLSSANT GVASHQSDQT VNMEDHQSIE EEEEDKEEDG 751 800 ENSP00000292779/1-613 DEDQDEDKDE DGV------- ---------- ---------- ------ ENSTTRP00000015855/1-466 ---------- ---------- ---------- ---------- ------ ENSBTAP00000051906/1-364 ---------- ---------- ---------- ---------- ------ bmy_14722T0/1-545 ---------- ---------- ---------- ---------- ------ BACU017133/1-786 EEEEEDKNDF GDEGEPQSSP EPQEEAVVST TAAGSGVGHG DCPWGP