KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:24 2014 Check: 00 .. Name: ENSP00000358695/1-521 Len: 521 Check: 7295 Weight: 1.00 Name: ENSBTAP00000051953/1-520 Len: 521 Check: 7547 Weight: 1.00 Name: ENSTTRP00000009996/1-521 Len: 521 Check: 9714 Weight: 1.00 Name: bmy_21059T0/1-385 Len: 521 Check: 729 Weight: 1.00 Name: BACU007765/1-413 Len: 521 Check: 2131 Weight: 1.00 // 1 50 ENSP00000358695/1-521 MLNVPSQSFP APRSQQRVAS GGRSKVPLKQ GRSLMDWIRL TKSGKDLTGL ENSBTAP00000051953/1-520 MLNVPSQSFP GPSSQQRVAS GGRSKVPLKQ GRSLMDWIRL TKSGKDLTGL ENSTTRP00000009996/1-521 MLNVPSQSFP GPSSQQRVSS GGRSKVPLKQ GRSLMDWIRL TKSGKDLTGL bmy_21059T0/1-385 MLNVPSQSFP GSSSQQRVSS GGHSKVPLKQ GRSLMDWIRL TKSGKDLTGL BACU007765/1-413 ---------- ---------- ---------- ----MDWIRL TKSGKDLTGL 51 100 ENSP00000358695/1-521 KGRLIEVTEE ELKKHNKKDD CWICIRGFVY NVSPYMEYHP GGEDELMRAA ENSBTAP00000051953/1-520 KGRLIEVTEE ELKKHNKKDD CWICIRGFVY NVSPYMEYHP GGEDELMRAA ENSTTRP00000009996/1-521 KGRLIEVTEE ELKKHNKKDD CWICIRGFVY NVSPYMEYHP GGEEELMSAA bmy_21059T0/1-385 KGRLTEVTEE ELKNHSKKD- ---------- ---------- ---------- BACU007765/1-413 KGRLIEVTEE ELKKHNKKDD CWICIRGFVY NVSPYMECHP GGEEELMRAA 101 150 ENSP00000358695/1-521 GSDGTELFDQ VHRWVNYESM LKECLVGRMA IKPAVLKDYR EEEKKVLNGM ENSBTAP00000051953/1-520 GSDGTDLFDQ VHRWVNYESM LKECLVGRMA MKPALPKDYH -EEKKVLNGM ENSTTRP00000009996/1-521 GSDGTDLFDQ VHRWVNYESM LKECLVGRMA VKPAFPKXXX XXXXXXXXXX bmy_21059T0/1-385 ---------- ---YH----- ---------- ---------- -EEKKLLNGM BACU007765/1-413 GSDGTDLFDQ AY-YH----- ---------- ---------- -EEKKLLNGM 151 200 ENSP00000358695/1-521 LPKSQVTDTL AKEGPSYPSY DWFQTDSLVT IAIYTKQKDI NLDSIIVDHQ ENSBTAP00000051953/1-520 LPQSQVTDTL AKEGPSSPSY DWFQTDSLVT IVIYTKQKDI NLDSVIVDHR ENSTTRP00000009996/1-521 XXXXXXXXXX XXXXXXXXXY DWFQTDALVT IVIYTKQKDI NLDSVIADHR bmy_21059T0/1-385 LPKSQVTDPL AKEGPSSPSY DWFQRDALVT IVIYTKQKDI NLDSVIADHR BACU007765/1-413 LPKSQVTDPL AREGPSSPSY DWFQRDALVT IVIYTKQKDI NLDSVIADHR 201 250 ENSP00000358695/1-521 NDSFRAETII KDCLYLIHIG LSHEVQEDFS VRVVESVGKI EIVLQKKENT ENSBTAP00000051953/1-520 DDSFRAETVI KDYSYLVHVA LSHEIQEDFS VLVVENVGKI EIVLKKKENT ENSTTRP00000009996/1-521 DDSFRAETVI KDYSYLIHIA LSHEIQEDFS VRVVENVGKI EIVLKKKENT bmy_21059T0/1-385 DDSFRAETVI KDYSYLIHIA LSHEIQEDFS VRVVENVGKI EIVLKKKENT BACU007765/1-413 DDSFRAETVI KDYSYLIHIA LSHEIQEDFS VRVVENVGKI EIVLKKKENT 251 300 ENSP00000358695/1-521 SWDFLGHPLK NHNSLIPRKD TGLYYRKCQL ISKEDVTHDT RLFCLMLPPS ENSBTAP00000051953/1-520 SWKCLGHPQE NHNSFIPKKD TGRFSEKYQV AEKENVSHIT SKDCLLSPAG ENSTTRP00000009996/1-521 SWKCLGHPLE NHNSLIPKKD TGLYYRKCQL ISKEDVTHDT KLFCLMLPPS bmy_21059T0/1-385 SWKCLGHPLE NHNSLIPKKD TG-------- ---------- ---------- BACU007765/1-413 SWKCLGHPLE NHNSLIPKKD TG-------- ---------- ---------- 301 350 ENSP00000358695/1-521 THLQVPIGQH VYLKLPITGT EIVKPYTPVS GSLLSEFKEP VLPNNKYIYF ENSBTAP00000051953/1-520 IHLESPPGKH VPLKLYISST EIVKPYTPVC DSLFSEFKEP VLPNNIYIYF ENSTTRP00000009996/1-521 THLQVPTGLH VYFKLTITGT EIVKPYTPVS DSLFSEFKEP VLPNNKYIYF bmy_21059T0/1-385 ---------- ---------I EIVKPYTPVS DSLFSEFKEP LLPNNKYIYF BACU007765/1-413 ---------- ---------T EIVKPYTPVS DSLFSEFKEP VLPNNKYIYF 351 400 ENSP00000358695/1-521 LIKIYPTGLF TPELDRLQIG DFVSVSSPEG NFKISKFQEL EDLFLLAAGT ENSBTAP00000051953/1-520 LIKIYPAGFF TPELDQLQIG DYVSVSNPEG NFIISQLQEL EDLFLLAAGT ENSTTRP00000009996/1-521 LIKIYPAGLF TPELDHLQIG DYVSVSNPEG NFKISQFQDL EDLFLLAAGT bmy_21059T0/1-385 LIKIYPAGLF TPELDHLQIG DYVSVSNPEG NFKISQFQEL EDLFLLAAGT BACU007765/1-413 LIKIYPAGLF TPELDHLQIG DYVSVSNPEG NFKISQFQEL EDLFLLTAGT 401 450 ENSP00000358695/1-521 GFTPMVKILN YALTDIPSLR KVKLMFFNKT EDDIIWRSQL EKLAFKDKRL ENSBTAP00000051953/1-520 GFTPMVKVLN YALTNIPSLR KVKLMFFNKT EDDIIWRSQL EKLAFKDKRF ENSTTRP00000009996/1-521 GFTPMVKVLS YALTNIPSLR KVKLMFFNKT EDDIIWRSQL EKLAFKDKRF bmy_21059T0/1-385 SFTPMVKVLS YALTNIPSLR KVKLMFFNKT EDHIIWRSQL EKLAFKDKRS BACU007765/1-413 DFTPMVKVLS YALTNIPSLR KVKLMFFNKT EDHIIWRSQL EKLAFKDKRF 451 500 ENSP00000358695/1-521 DVEFVLSAPI SEWNGKQGHI SPALLSEFLK RNLDKSKVLV CICGPVPFTE ENSBTAP00000051953/1-520 EVEFVLSAPT SEWSGKQGYI SPALLSEFLK RRSDTSKVLI CLCGPTPFTE ENSTTRP00000009996/1-521 DVEFVLSVPT SEWNSKRGYI SPALLSEFLK RSLDTSKVLI CICGPMPFTE bmy_21059T0/1-385 DLEFVLSAPT SEWNGKRGYI SPALLSEFLK RSLDTSKVLI SFVDQCHLQN BACU007765/1-413 DLEFVLSAPT SEWNGKRGYV SPALLSEFLK RSLDMSKVLI CICGPMPFTE 501 550 ENSP00000358695/1-521 QGVRLLHDLN FSKNEIHSFT A ENSBTAP00000051953/1-520 QGMKMLHDLN FSKDEIHSFT A ENSTTRP00000009996/1-521 QGMKLLHDLN FSKDEIHSFT A bmy_21059T0/1-385 KE-------- ---------- - BACU007765/1-413 QGMKLLHDLN FSKDEIHSFT A