KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:26 2014 Check: 00 .. Name: bmy_05017T0/1-320 Len: 495 Check: 870 Weight: 1.00 Name: ENSP00000371394/1-401 Len: 495 Check: 8593 Weight: 1.00 Name: ENSTTRP00000015113/1-398 Len: 495 Check: 3966 Weight: 1.00 Name: BACU003603/1-234 Len: 495 Check: 9647 Weight: 1.00 Name: ENSBTAP00000052023/1-391 Len: 495 Check: 9262 Weight: 1.00 // 1 50 bmy_05017T0/1-320 ---------- ----MGRPPG PHSARAPAGS TAVPGLIPDL VARIPWLRWA ENSP00000371394/1-401 MLHLHGWQTM QGRKMGHPPV SPSAPAPAGT TAIPGLIPDL VAGTPWPRWA ENSTTRP00000015113/1-398 TLHLCQWQTM Q-EEMSRPPG PHSARALAGS TALPGRIPDL VARIPWLRWV BACU003603/1-234 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052023/1-391 --------QR D-QEMEHPPD THSARTPVGT TATPGLTLDL ATPIPWLRWA 51 100 bmy_05017T0/1-320 LIATAVVAGV LVVSCLLCAI --CRRGRHRK KPRDEEAVGL GSACSTIDTH ENSP00000371394/1-401 LIAGALAAGV LLVSCLLCAA CCCCR-RHRK KPRDKESVGL GSARGTTTTH ENSTTRP00000015113/1-398 LIAAAVVAGV LVVSCLLCAI CCCCRGRHRK EPRDEAAVGL GSARSTINTQ BACU003603/1-234 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052023/1-391 LVAATIVAGV LLTSCLLCTV CCCRRGRHRK RPRDKEAVVL GTTGLTTTTH 101 150 bmy_05017T0/1-320 LVQPDVDDVE PGPGGPQQRE RLQLSVEYDF GSQAIKVGLK QAARWTP--- ENSP00000371394/1-401 LVQPDVDGLE SSPGDAQQWG CLQLSLEFDF GSQEIRVGLR QAADLRP--- ENSTTRP00000015113/1-398 PVQPDVDKEE PGPGGPQQWE CLQLSVEYDF GSQEIKVGLR QAADLRPRGP BACU003603/1-234 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052023/1-391 LVQPELGNVA SGPGGAQQWG -LQLSLEYDS GSQEIRVGLK QAADLRPRTP 151 200 bmy_05017T0/1-320 ----TPASAS PLRPGAGTRR RCTVVPSA-- ---------- ---------P ENSP00000371394/1-401 GGTVDPYARV SVSTQAGHRH ETKVHRGTLC PVFDETCCFH IPQ------A ENSTTRP00000015113/1-398 GGTADPYACV SLSPEAGCRH ETKVHRGTLC PTFEETYSFH VAP------V BACU003603/1-234 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052023/1-391 GGTADPYARL SLSPDAGRTH ETKVHPGTLC PVFEETCSFH VSPGWARGAG 201 250 bmy_05017T0/1-320 RSRRPALSTA LRE------- ---------- ---------- ------GPAC ENSP00000371394/1-401 ELPGATLQVQ LFNFKRFSGH EPLGELRLPL GTVDLQHVLE HWYLLGPPAA ENSTTRP00000015113/1-398 ELPRTALRVQ VLDYKLFSQH GLLGALSLPL GTVDPQPVLE LWHPLGLPST BACU003603/1-234 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052023/1-391 RGGRAALPSC CSWHRRFSQH GTLGTLSLPL GSVDLQHVLE LWRPLGPPAA 251 300 bmy_05017T0/1-320 AEPEEVEEEK DICQEEHGHP LLQ------R GLHLPCAFQP DPGGLPGGGG ENSP00000371394/1-401 TQPEQVGELC FSLRYVPSSG RLTVVVLEAR GLRPGLAEPY VKVQLMLNQR ENSTTRP00000015113/1-398 AEPEQLGEVC FSLQYVPGSG RLTVVVLEAR GLSPVLAXXX XXXXXXXSQR BACU003603/1-234 ---------- -MNTYVPGSG WLTVVVLEAQ GLSPVLAEPY VKVQLVLNQR ENSBTAP00000052023/1-391 AEPEQTEELC FLLRYVPGSG RLTVVVLEAR GLSPALADPY VKVQLLLNQR 301 350 bmy_05017T0/1-320 GWNLAQGQTD GCLSPPPTAP R-----P-AS TQSVALVLAV WARGPQFRAE ENSP00000371394/1-401 KWKKRKTATK KGTAAPYFNE AFTFLVPFSQ VQNVDLVLAV WDRSLPLRTE ENSTTRP00000015113/1-398 KWKKRKTSAR KGMATPYFNK TFTFLVPFSQ IQSVALVLAV WTWGPQFQAK BACU003603/1-234 KWKKRKTSAR KGTATPYINE AFTFLVPFSQ IQSVALVLAV WARGPQFRAK ENSBTAP00000052023/1-391 KWKKRKTSAR KGTATPYYNE AFTFLVPFSQ IQSVDLVLAV WARGPQLRPQ 351 400 bmy_05017T0/1-320 PVSKVLLGAR ASGQPLQHWA DMLAHARRPI AQWHRLQPAR DVDRA----- ENSP00000371394/1-401 PVGKVHLGAR ASGQPLQHWA DMLAHARRPI AQRHPLRPAR EVDRM----- ENSTTRP00000015113/1-398 PVSKVLLGAR ASGQPPQHWA DMLAHARRP- ---HRLQPAR EVDQA----- BACU003603/1-234 PVSKVLLGAR ASGQPLQHWA DMLAHARRPI AQWHRLQPAR EVDRAALRPG ENSBTAP00000052023/1-391 PV-KVLLDS- ------QRWA DMLAQARRPV AQWHRLQPAR EVGQA----- 401 450 bmy_05017T0/1-320 ---------- ---------L ALQP--HLRL PLPGS----- ---------- ENSP00000371394/1-401 ---------- ---------L ALQPRLRLRL PLPHS----- ---------- ENSTTRP00000015113/1-398 ---------- ---------L ALQP--HLRL PLPGS----- ---------- BACU003603/1-234 LQDGRLEDLS QKLFDLRGKF KRPPLRRVRM SADAMLKALL GSKHKVCMDL ENSBTAP00000052023/1-391 ---------- ---------R PCSP--ACIC PCPAA----- ---------- 451 500 bmy_05017T0/1-320 ---------- ---------- ---------- ---------- ----- ENSP00000371394/1-401 ---------- ---------- ---------- ---------- ----- ENSTTRP00000015113/1-398 ---------- ---------- ---------- ---------- ----- BACU003603/1-234 RSNLKQVKKE DTEKERDLRD VGDWRKNIEE KSGMEGRKKM FESES ENSBTAP00000052023/1-391 ---------- ---------- ---------- ---------- -----