KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:30 2014 Check: 00 .. Name: ENSP00000419786/1-1388 Len: 1427 Check: 6684 Weight: 1.00 Name: ENSTTRP00000010386/1-1342 Len: 1427 Check: 7048 Weight: 1.00 Name: ENSBTAP00000052128/1-1354 Len: 1427 Check: 6846 Weight: 1.00 Name: bmy_11113T0/1-1394 Len: 1427 Check: 9794 Weight: 1.00 Name: BACU019779/1-1360 Len: 1427 Check: 9111 Weight: 1.00 // 1 50 ENSP00000419786/1-1388 ---MSIPLHS LRFNNTMREE NVEPQNKQMA FCRPMTETRA DVQILHSHVQ ENSTTRP00000010386/1-1342 ---TSIPLHS VRFSNVLTEE GVDPQNRETT CSGPMVENRA EVQILHSSVQ ENSBTAP00000052128/1-1354 ---TSIPLNS LQFSNVLREE NGDTQNREMT FSGPTQENTA EGQILPSSVQ bmy_11113T0/1-1394 MADMSIPLRS LRFSNVLTEE SVDPQNRETT CSGPMIENRA EVQILHSSVQ BACU019779/1-1360 ---MSIPLHS LRFSNVLTEE SVDPQNRETT CSGTMIENRA EVQILHSSVQ 51 100 ENSP00000419786/1-1388 LPIVSTSASD PGGTSTQLMT SPVFDTMSAP LMGVPNSG-- -ALSPPLM-- ENSTTRP00000010386/1-1342 -PMVSSSASD PGGVSTQPMT SPAFDTMAVP LMGAANSG-- -ALSPPLM-- ENSBTAP00000052128/1-1354 -PMVSTSASD PGGMSTQLMT SPAFDTMATP LMGTANSGDS GALSPLLM-- bmy_11113T0/1-1394 -PMVSSSASD PGGMSTQLMT SPAFDTMAVP LMGAANSG-- -ALSPPLMPA BACU019779/1-1360 -PMVSSSASD PGGMSTQLMT SPAFDTMAIP LMGAANSG-- -TLSPPLMPA 101 150 ENSP00000419786/1-1388 ---------- -PASDSGALS PLLMPASDSG ALSPLLMPAL DSGTLSPLLS ENSTTRP00000010386/1-1342 ---------- -PASDSGTLS PLLMPASDSG VLSPLLMPAS DSGTLSPLLS ENSBTAP00000052128/1-1354 ---------- -PTSDSEALS PLLMPTSDSG MLSPLLMPAS DSGTLSPLLS bmy_11113T0/1-1394 SDSGTLSPLL MPASDSEALS PLLIPTSDSG VLSPLLIPTS DSGTLSPLLS BACU019779/1-1360 SDSGTLSPLL MPASDSEALS PLLIPTSDSG VLSPLLIPTS DSGTLSPLLS 151 200 ENSP00000419786/1-1388 TSEYGVMSPG MMTIPDFGTM SATLMVAPDS AEISPLAMPA PSSGVVCTPI ENSTTRP00000010386/1-1342 TSEYGLMSPG LMTIPDFGTM STALMATPDS AEISPLAMPA P--------- ENSBTAP00000052128/1-1354 TSEYGLMSPG LM-IPDFGTM STALTATPDS EDISPLAMSA S--------- bmy_11113T0/1-1394 TSEYGLMSPG LMTIPDFGTM STALMGTPDS AEISPLAMPA P--------- BACU019779/1-1360 TSEYGLMSPG LMTIPEFGTM STALMATPDS AEISPLAMPA P--------- 201 250 ENSP00000419786/1-1388 MSTSSSEAMS TPLMLAPDSG ELSPILMQDM NPGVMSTQPV PAPSSEAMSP ENSTTRP00000010386/1-1342 ----SSEAMS APLMLVPDPG EISPLLMPDV NPGAMSPQPM PAPGSEGMSP ENSBTAP00000052128/1-1354 ----SSEAMA TPLMLAPDSG ELSPLLMPDI NPREMSTQPT PAPGFEGMSP bmy_11113T0/1-1394 ----PSEAMS TPSMLAPDPG EISPLLMPDV NPGVMSPQPM PAPGSEGMSP BACU019779/1-1360 ----SSEAVS TPLMLAPDPG EISPLLMPDV NPGVMSPQPM PAPGSEGMSP 251 300 ENSP00000419786/1-1388 LQITDEDTEA MSKVLMTALA SGEISSLLMS GTDSEAISSL IMSAVASGGT ENSTTRP00000010386/1-1342 LQITDEDTEA MSKVLMTALA SGEISSLLMS GTDSEAISSL IMSALTSGAT ENSBTAP00000052128/1-1354 LQITDEDTEA MSKVLMTALV SGEISSLLMS DTDSEAISSL IMSALTSEAM bmy_11113T0/1-1394 LQITDEDTEA MSKVLMTALA SGEISSLLMS GTDSEAISSL IMSALTSGAT BACU019779/1-1360 LQITDEDTEA MSKVLMTALA SGEISSLLMS GTDSEAISSL IMSALTSGAT 301 350 ENSP00000419786/1-1388 SPQPTSTQNS GGIPTPLMSD LDSGIMSSLL MSSPGSEVMS TPLLSVPDAG ENSTTRP00000010386/1-1342 STQPTSAQDS GEMSTQLMSG PDSEVVASPL MTAPGSGAMS SLFPSVPDAG ENSBTAP00000052128/1-1354 STQLTSTQDS GEMSTQLMSG PDSAVQSLPL TTAPGSGAIS SPLLSVPEAR bmy_11113T0/1-1394 STQPTSTQDS GEMSTQLMSG PDSGVVSSPL MTAPGSGAMS SLLLSVPDAG BACU019779/1-1360 STQPTSTQDS GEMSTQLMSG SDSGVVSSPL MTAPGSGAMS SLLLSVPDAG 351 400 ENSP00000419786/1-1388 EMSTLPKPAP DAEAMSPALM TALPSGVMPT QTMPAPGSGA MSPWSTQNVD ENSTTRP00000010386/1-1342 EMPTLPKPAP DAEAMSPLVM MALTSGGMPT QPMPAQGSGV MSSRLTQNLD ENSBTAP00000052128/1-1354 EMPILSKPAP DAEAVSPLLM MALSSGGMPT QLMPAQSSGA MSSQLTQNLD bmy_11113T0/1-1394 EMPTLPKPAP DAEAMSPLVM MALTSGGMPT QLMPAQGSGV MSSRLTQNLD BACU019779/1-1360 EMPTLPKPAP DAEAMSPLVM MALTSGGMPT QLMPAQGSGV MSSRLTQNLG 401 450 ENSP00000419786/1-1388 SEMMSNPPVR ATASGVMSAP PVRALDSGAM STPLMGAPAS GNMSTLQKTV ENSTTRP00000010386/1-1342 SQIVSSPPMR ATASGGMSTL PVRASDPGAR STPRMRAPAS GNVSTLLKTV ENSBTAP00000052128/1-1354 SQIVSTPPTR ATASGEMSAS SARASDSGAR STLRMRTPAS GNMSTLLKTV bmy_11113T0/1-1394 SQIVSSPPMR ATASGGMSAP PVRASEPGAR STPRMRAPAS GSVSTLLKTV BACU019779/1-1360 SQVVSSPPMR ATASGGMSTP PVRAPEPGAR STPRMRAPAS GSVSTLLKTV 451 500 ENSP00000419786/1-1388 PASGAMTTSL MTVPSSGVMS TEQMSATASR VMSAQLTMAK TSGAMPTGSM ENSTTRP00000010386/1-1342 PDSAALSTPL MMVATSGAKC TEQMSTTASR AMSTQLATAR TSGATSMG-- ENSBTAP00000052128/1-1354 PDSAALSTPL MTATTSGTMS AEPVPTAASR GMSTHLTTAQ ISGATSTG-- bmy_11113T0/1-1394 PDSAALSTPL MTVATSGAKS TEQMSTAASR AMSTQLAMAR TSGATSMG-- BACU019779/1-1360 PDSAALSTPL MTVATSGAKS TEQMSTAASR AMSTQLAMAR ASGAMSVG-- 501 550 ENSP00000419786/1-1388 KAVAKQYKRA TASGKMSTPL RRAPTSGAMS TQPVTATASE TMSMPQLTVP ENSTTRP00000010386/1-1342 ------FMKV PANGAMSTLR TRAPASGTVS TLPSTAPVSE TMSTLQMTAS ENSBTAP00000052128/1-1354 ------FMKV PASGAKSTPR MRAPALGAMS IPPSTAPISE TVSMLQMTTP bmy_11113T0/1-1394 ------FMRV PANGAMSTLR MRAPASGTMS TLPSTAPVSE TMSVLQMTAS BACU019779/1-1360 ------FMRV PANGAMSTLR MRAPASGTMS TLPSTAPVSE TMSMLQMTAS 551 600 ENSP00000419786/1-1388 ASGSMSMLQM RAPVSEAMSM PQMRTMASGL TSAAQMKAMT SGAMSTPLMT ENSTTRP00000010386/1-1342 ASGSVSTPQM RAPVSGAMSV SQRRATASGV TAVPQMRA-- SGALSTPRMT ENSBTAP00000052128/1-1354 ASGSVPTLQI KAPVSGATSR SQRRATALRV TAGPQMRA-- SGAMSTPQMT bmy_11113T0/1-1394 ASGSVSTXQM RAPVSGAMSV SQRRATASGV TAVPQMRA-- SGAMSTPRMT BACU019779/1-1360 ASGSVSTPRM RAPVSGAMSV SQRRATASGV TAVPQMRA-- SGAMSTPRMT 601 650 ENSP00000419786/1-1388 AQTSGSTSTL LMRDTASGVM SCPQMRSLAS GALSKPLMTP KASGTMFTEK ENSTTRP00000010386/1-1342 AKASGSVSTL LMRDTASAVM SVPQMRAMAS GALSKPLTAS KAAEAMLTQQ ENSBTAP00000052128/1-1354 AKASGSMSSL LTRDTAPGVM SVPLMKATAS GALSKPLTTT KASEAMFMQQ bmy_11113T0/1-1394 AKASGSMSTL LMRDTASAVM SVPQMRAMAS GALSKPLTTS KAAEAMFMQQ BACU019779/1-1360 AKASGSMSTL LMRDTASAVM SVPQMRAMAS GALSKPLTTS KAAEAMFMQQ 651 700 ENSP00000419786/1-1388 MTTTASEAMP TLLMRDTVSG ALSMPQMTDT ASGGLSASLM RDTASGAMST ENSTTRP00000010386/1-1342 MTTAASGEIS TMLMRDTASG AVSMPQMTDT ASAALSTPLM RAPASGDTST ENSBTAP00000052128/1-1354 MTTAASGEIS TMLMRDIASG AMSMPQMTDT ASAGMSTPLM RAPASGDVST bmy_11113T0/1-1394 MTTAASGEIS TMLMRDTASG AVSMPQMTDT ASAAMSTPLM RAPASGDMST BACU019779/1-1360 MTTAASGEIS TMLMRDTASG AVSMPQMTDT ASAAMSTPLM RAPASGDMSI 701 750 ENSP00000419786/1-1388 SQMTATVSGG MSMPLMRAQD PGVMPASLMR AKVSGKMLSQ PMSTQDPGGM ENSTTRP00000010386/1-1342 PQMTAAASGT MSMPLMRAPG PGAMPMALMR STASGKMPSQ PMSAQDFGGM ENSBTAP00000052128/1-1354 PQMTAAASGS MSVPLMRAPG PGTMPTVLMR STVSGKMPSQ PIGTQDFGGM bmy_11113T0/1-1394 PQMTAAAPGT MSMPLMRAPG PGAMPMALMR STASGKMPSQ PMSAQDFGGM BACU019779/1-1360 PQMTAAAPGT MSMPLMRAPG PGAMPMALMR STASGKMPSQ PMSAQDFGGM 751 800 ENSP00000419786/1-1388 SMSPMKSMTA GGM---QMNS PTSDVMSTPT VRAWTSETMS TPLMRTSDPG ENSTTRP00000010386/1-1342 SMSLRRSMTS GGMSLLQTQA PASELMSTPK MRAPAFGAVS TPLMRASDPG ENSBTAP00000052128/1-1354 SMSFKRFMTS GGMSTLQMRA PASEVMSTPK IRAPSFGAVS TPLMRASNPG bmy_11113T0/1-1394 SMSLRRSMTS GGMSLLQTQA PASELMSTPK MRAPAFXAVS TPLMRASDPG BACU019779/1-1360 SMSLRRPMTS GGMSLLQTQA PASELMSTPK LRAPAFGAVS APLMRASDPA 801 850 ENSP00000419786/1-1388 ERPSLLTRAS SSGEMSLPLM RAPASGEIA- TPLRSPAYGA MSAPQMTATA ENSTTRP00000010386/1-1342 EMSTLLTRAS SSGEMSPALT RPPASGEIA- TPLRAPAYGA MSTPQKTATA ENSBTAP00000052128/1-1354 EVSTLLTRAS SSGEMSSAPT RSPTSGEIAT TPLRAPAYGA MSTPQRTATA bmy_11113T0/1-1394 EMSTLLTRAS SSGEMSPALT RPPASGEIA- TPLRAPAYGA MSTPQKTATA BACU019779/1-1360 EMPTQLTRAS SSGETSPALT RPPASGEVA- TPLRAPAYGA MSTPQKTATA 851 900 ENSP00000419786/1-1388 SGMMSSMPQV KAPISGAMSM PLTRSTASG- ---------- --GMSMPLMR ENSTTRP00000010386/1-1342 SGMMSK-PQM RAPVSGEIST SLMRSTASGV MSVPXXXXXX XXXXXXXXXX ENSBTAP00000052128/1-1354 SGMMSM-PQM RAPISGPMST PLMRSTASG- ---------- -GGVPMPLLR bmy_11113T0/1-1394 SGMMSK-PQM RAPVSGEIST LLMRSTASGV MSVPQMTAAA SGGVSMPLMR BACU019779/1-1360 SGMMSK-PQM RAPVSGELST SLMRSTASGV RSVPQMTAAA SGGVSLPLMR 901 950 ENSP00000419786/1-1388 APDSRVTSTS QMMPTASGDM CTLPVRAPAS GGVSSPLVRA PASGTMSTPL ENSTTRP00000010386/1-1342 XXXXXXXXXX XXXXX----- ---------- ---------- ---------- ENSBTAP00000052128/1-1354 APAPGATSAP QMPTAASAEV CTLSMRAPSL GVMSPPLLRA PVSGIMCTPP bmy_11113T0/1-1394 APASRATSTT QMMPTASGEM CMLSVRAPAS GVMSPPLLRA PMSGIMSTPL BACU019779/1-1360 APASRATSTT QMMPTASGEM ---------- ---------- ---------- 951 1000 ENSP00000419786/1-1388 RRPSACETVS TELMRASASG HMSTAQTTAM VSGGMSKPLM RAPASGTMPM ENSTTRP00000010386/1-1342 -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000052128/1-1354 RRPSVSEDVS TEFMRGPASG KMATAQTTAM ASGGMSKPSV RAVASGVTPM bmy_11113T0/1-1394 RRPSASEAVS TELMRAPASG KMSTTQTTAV ASGGMSKPFI RATASGTMPM BACU019779/1-1360 -RPSASEAVS TELMRAPASG KMSTTQTTAV ASGGMSKPFI RATASGTMPM 1001 1050 ENSP00000419786/1-1388 PLMSAMASGE MSMPLMETMA SGATSTLQTS VANSRSMSLS QTTYTVSGRM ENSTTRP00000010386/1-1342 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000052128/1-1354 PLMSAMASGE TSIPLMKSLS SGAMSTLQTR VVSSGSTSLP QTTYTTSGKM bmy_11113T0/1-1394 PLMSAMASGE MSMPLMKSMA SGATSTLQKR VVSSGPTSLP QMTYATSGGM BACU019779/1-1360 PLMSAMASGE MSMPLMKSMA SGATSTLQKR VVSSGPTSLP QMTYSTSGGM 1051 1100 ENSP00000419786/1-1388 ATAPIRASAS GARSTSFMRA SVSGSMPMPL PRATASGCGM GMSMPQMTAT ENSTTRP00000010386/1-1342 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX--- XXXXXXXXXX ENSBTAP00000052128/1-1354 STPLMRASAS RATSTPLMRA SASGMMSMPL LRPISSG--- GM-------- bmy_11113T0/1-1394 PASPMRASAS GATSVSLMRA SASGMMSMPL LRATASG--- GMSMPQMAAT BACU019779/1-1360 PASPMRASAS GATPVSLMRA SASGMMSMPL LRATASG--- GMSMPQMAAT 1101 1150 ENSP00000419786/1-1388 DSRGMSTPLM RASGPGTMST PQ---TAFGV MSTPEIKATD SGEASTSHIN ENSTTRP00000010386/1-1342 XXXXXXXXXX XXXXXXXXXM PQMAATASGM MSTLEIKAKD SGETSASHIN ENSBTAP00000052128/1-1354 -----SMPLM RATVPGAMFA SQMA--APGM MSTLGIKATD SGETSAPRIN bmy_11113T0/1-1394 ASRGVSMPLM RAPVPGAMST PQMATTASGM MSTLEIKATD SGETCASHIN BACU019779/1-1360 ASRGVSMPLM RAPVPGATST PQMATTASGM MSTLEIKATD SGETSASHIN 1151 1200 ENSP00000419786/1-1388 ITASGSKPTS HMTATTPETA KPPPKEVPSF GMLTPALCYL LEEQEAARGS ENSTTRP00000010386/1-1342 VTASGSKFTP HVTATTRETM NQPPEEVPSF GMLTPALCYL LEEQEAARGS ENSBTAP00000052128/1-1354 VTASGSKSTP HATTTPPKTV KPPSEEVPSF GMLTPALCYL LEEQEAARGS bmy_11113T0/1-1394 VRASGSKSTP HVTAMTPETM NQPPEEVPSF GMLTPALCYL LAEQEAARGS BACU019779/1-1360 VRASGSKSTP HVTATTPETM NQPPEEVPSF GMLTPALCYL LAEQEAARGS 1201 1250 ENSP00000419786/1-1388 CSVEEEMEID EEKQMKGFLD DSERMAFLVS LHLGAAERWF ILQMEVGEPL ENSTTRP00000010386/1-1342 CSVEEEMEVD EEKQMKGFLN DSEKMAFLVS LHLGAAERWS ILQMEVGNPL ENSBTAP00000052128/1-1354 CPVEEEVEID EEKQMKGFLN DSEKMAFLVS LHLGAAERWS ILQMEVGNPL bmy_11113T0/1-1394 CSVEEEMEID EEKQMKGFLN DSEKMAFLVS LHLGAAERWS ILQMEVGNPL BACU019779/1-1360 CSVEEEMEID EEKQMKGFLN DSEKMAFLVS LHLGAAERWS ILQMEVENPL 1251 1300 ENSP00000419786/1-1388 SHENKSFLRR SQGIYDSLSE IDILSAVLCH PKQGQKSVRQ YATDFLLLAR ENSTTRP00000010386/1-1342 SNEDKSFLSR SQGLYDSLSE IDILSAVLCH PKQGQRSVRQ YATDFLLLAR ENSBTAP00000052128/1-1354 TSEDKSFLRR SQGLYDSLSE IDILSAVLCH PKQGQKSVRQ YATDFLLLAR bmy_11113T0/1-1394 SNEDKSFLSR SQGLYDSLSE IDILSAVLCH PKQGQKSVRQ YATDFLLLAR BACU019779/1-1360 SNEDKSFLSR SQGLYDSLSE IDILSAVLCH PKQGQKSVRQ YATDFLLLAR 1301 1350 ENSP00000419786/1-1388 HLSWSDAILR TRFLEGLSEA VTTKMGRIFL KVAGSLKELI DRSLYTECQL ENSTTRP00000010386/1-1342 HLSWSDAILR TRFLEGLSEA VATKMGRIFL KVAGSLKELI DRSLYTECQL ENSBTAP00000052128/1-1354 HLSWSDAILR TRFLEGLSEA VATKMGRIFL KVAGSLKELI DRSLYTECQL bmy_11113T0/1-1394 HLSWSDAILR TRFLEGLSEA VATKMGRIFL KVAGSLKELI DRSLYTECQL BACU019779/1-1360 HLSWSDAILR TRFLEGLSEA VATKMGRIFL KVAGSLKELI DRSLYTECQL 1351 1400 ENSP00000419786/1-1388 AEEKDSPGNS SQVLPTACKR NNEEAMGNEL SSQQQTEEHQ HVSKRCYYLK ENSTTRP00000010386/1-1342 AGEKDFPGCS SQVLPSACKR NNEDAMENEL NSQQQTEEHQ HVPKRCYYLK ENSBTAP00000052128/1-1354 AGEKNSRGSS SQVLTSPCKR NSEEAMENEL NPQQQTEEHQ HVPKRCYYLK bmy_11113T0/1-1394 AGEKDSPGSS SQVLPSACKR NNEEAMENEL NSPQQTEEHQ HVPKRCYYLK BACU019779/1-1360 AGEKDAQGSS SQVLPSACKR NNEEAMENEL NSPQQTEEHQ HVPKRCYYLK 1401 1450 ENSP00000419786/1-1388 EHGDPQEGLH DHLGQSTGHH QKAHTNK ENSTTRP00000010386/1-1342 EHGDPQEGLH DHLRQSTG-H QKAATNK ENSBTAP00000052128/1-1354 EHEDPQEGLH DHLRKSTG-H QKAPTNK bmy_11113T0/1-1394 EHGDPQEGLH DHLRQSTG-H QKAPTNK BACU019779/1-1360 EHGDPQEGLH DHLRQSTG-H QKAPTNK