KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:34 2014 Check: 00 .. Name: bmy_01429T0/1-211 Len: 277 Check: 3753 Weight: 1.00 Name: ENSBTAP00000052234/1-167 Len: 277 Check: 7841 Weight: 1.00 Name: ENSP00000387051/1-195 Len: 277 Check: 1761 Weight: 1.00 Name: BACU009924/1-233 Len: 277 Check: 3631 Weight: 1.00 Name: ENSTTRP00000000636/1-107 Len: 277 Check: 759 Weight: 1.00 // 1 50 bmy_01429T0/1-211 ---------- ---------M GYAA------ ---APAYSPN TYPGANPTFQ ENSBTAP00000052234/1-167 MNPVYSPGSS GVPYANAKGI GYPG------ ---------- ---------- ENSP00000387051/1-195 MNPVYSPGSS GVPYANAKGI GYPAGFPMGY AAAAPAYSPN MYPGANPTFQ BACU009924/1-233 MNPVYSPGSS GVPYANAKGI GYPAGFPMGY AAAAPAYSPN MYPGANPTFQ ENSTTRP00000000636/1-107 MNPVYSPGSS GVPYANAKGI GYPAGFPMGY AAAAPAYSPN MYPGANPTFQ 51 100 bmy_01429T0/1-211 TG-------- ---------- ---------- ---------- YTPGTPYKVS ENSBTAP00000052234/1-167 ---------- ---------- ---------- ---------- YTSGTPYKVS ENSP00000387051/1-195 TG-------- ---------- ---------- ---------- YTPGTPYKVS BACU009924/1-233 TESYYTKFVW YAVLLGKNDL FQCEKLLAPQ QQSESSGPVR YTPGTPYKVS ENSTTRP00000000636/1-107 TG-------- ---------- ---------- ---------- YTPGTPYKVS 101 150 bmy_01429T0/1-211 CSPTSGAVPP YSSSSNPYQT AGHTVRSAYP QQSAHAQQGT YYPQPLYAAP ENSBTAP00000052234/1-167 CSPTSGAVPP YSSSPNPYQT AVYPVRSAYP QQSPYAQQGT YYTQPLYAAP ENSP00000387051/1-195 CSPTSGAVPP YSSSPNPYQT AVYPVRSAYP QQSPYAQQGT YYTQPLYAAP BACU009924/1-233 CSPTSGAVPP YSSSPNPYQT AVYPVRSAYP QQSPYAQQGT YYPQPLYAAP ENSTTRP00000000636/1-107 CSPTSGAVPP YSSSPNPYQT AVYPVRSAYP QQSPYAQQGT YYPQP----- 151 200 bmy_01429T0/1-211 PHVIHHTTVV QPNGMPMPAT VSPAPIPLPR GNGVTMGTVA GTTIAMSAGT ENSBTAP00000052234/1-167 PHVIHHTTVV QPNG--MPAT VYPAPLPPPR GNGVTMGMVA GTTMAMSAGT ENSP00000387051/1-195 PHVIHHTTVV QPNG--MPAT VYPAPIPPPR GNGVTMGMVA GTTMAMSAGT BACU009924/1-233 PHVIHHTTVV QPNG--MPAT VYPAAIPPPR GNGVTMGMVA GTTMAMSAGT ENSTTRP00000000636/1-107 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_01429T0/1-211 LLTAHPLPNS CRPPPRHCAH LSGPRNTHLQ LCAPSVVITL QTFADGAVQS ENSBTAP00000052234/1-167 LLTAHS-PTP VAPHPVTVPT YRAPGTPTYS YVPPQW---- ---------- ENSP00000387051/1-195 LLTAHS-PTP VAPHPVTVPT YRAPGTPTYS YVPPQW---- ---------- BACU009924/1-233 LLTAHS-PTP VAPHPVTVPT YRAPGTPTYS YVPPQW---- ---------- ENSTTRP00000000636/1-107 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_01429T0/1-211 RRGGSTAGAA GLVPPTRTFF LMLSTLS ENSBTAP00000052234/1-167 ---------- ---------- ------- ENSP00000387051/1-195 ---------- ---------- ------- BACU009924/1-233 ---------- ---------- ------- ENSTTRP00000000636/1-107 ---------- ---------- -------