KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:35 2014 Check: 00 .. Name: ENSTTRP00000013176/1-541 Len: 564 Check: 4665 Weight: 1.00 Name: bmy_17403T0/1-541 Len: 564 Check: 4784 Weight: 1.00 Name: ENSBTAP00000052283/1-563 Len: 564 Check: 5314 Weight: 1.00 Name: ENSP00000301204/1-493 Len: 564 Check: 8480 Weight: 1.00 Name: BACU002058/1-237 Len: 564 Check: 210 Weight: 1.00 // 1 50 ENSTTRP00000013176/1-541 ---------- ---------- ---LPPRARA KYVRSNLSSK EDWVFLTRFC bmy_17403T0/1-541 MEPPSAPALR RLLLPPLLLL LLPLPPRARA KYVRGNLSSK EDWVFLTRFC ENSBTAP00000052283/1-563 MEPPRAPALR R-LLPPLLLL MLPLPPRARA KYVRGNLSSK EDWVFLTRFC ENSP00000301204/1-493 MEPLRAPALR R-LLPPLLLL LLSLPPRARA KYVRGNLSSK EDWVFLTRFC BACU002058/1-237 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013176/1-541 FLSDYGRLDF RFRYPEAKCC QNILLYFDDP SQWPAVYKAG DKDCLAKESV bmy_17403T0/1-541 FLSDYGRLDF RFRYPEAKCC QNILLYFDDP SQWPAVYKAG DKDCLAKESV ENSBTAP00000052283/1-563 FLSDYGRLDF RFRYPEAKCC QNILLYFDDP SQWPAVYKAG DKDCLAKESV ENSP00000301204/1-493 FLSDYGRLDF RFRYPEAKCC QNILLYFDDP SQWPAVYKAG DKDCLAKESV BACU002058/1-237 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000013176/1-541 IRPENNQVIN LTTQYAWSGC QVVSEEGIRY LSCSSGRSFR SVRERWWYIA bmy_17403T0/1-541 IRPENNQVIN LTTQYAWSGC QVVSEEGMRY LSCSSGRSFR SVRERWWYIA ENSBTAP00000052283/1-563 IRPENNQVIN LTTQYAWSGC QVVSEEGTRY LSCSSGRSFR SVRERWWYIA ENSP00000301204/1-493 IRPENNQVIN LTTQYAWSGC QVVSEEGTRY LSCSSGRSFR S--------- BACU002058/1-237 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000013176/1-541 LSKCGGDGLQ LEYEMVLTNG KSFWTRHFSA DEFGILETDM TFLLVFILIF bmy_17403T0/1-541 LSKCGGDGLQ LEYEMVLTNG KSFWTRHFSA DEFGILETDV TFLLVFILIF ENSBTAP00000052283/1-563 LSKCGGDGLQ LEYEMVLTNG KSFWTRHFSA DEFGILETDV TFLLIFILIF ENSP00000301204/1-493 -----GDGLQ LEYEMVLTNG KSFWTRHFSA DEFGILETDV TFLLIFILIF BACU002058/1-237 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000013176/1-541 FLSCYFGYLL KGRQLLHTTY KMFMAAAGVE DLSLRSFCIY WGQYATDGIS bmy_17403T0/1-541 FLSCYFGF-- ---------- ---------- -LSLLFFCIY WGQYATDGIG ENSBTAP00000052283/1-563 LLSCYLGYVL KGRQLLHTTY KMFMAAAGME VLSLLFFCIY WGQYATDGIG ENSP00000301204/1-493 FLSCYFGYLL KGRQLLHTTY KMFMAAAGVE VLSLLFFCIY WGQYATDGIG BACU002058/1-237 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000013176/1-541 NESLKILAKL LFSSSFLIFL LMLILLGKGF TVTRGRISHS GSVKLSVYMT bmy_17403T0/1-541 NESLKILAKL LFSSSFLIFL LMLILLGKGF TVTRGRISHS GSVKLSVYMT ENSBTAP00000052283/1-563 NESLKILAKL LFSSSFLIFL LMLILLGKGF TVTRGRISHS GSVKLSVYMT ENSP00000301204/1-493 NESVKILAKL LFSSSFLIFL LMLILLGKGF TVTRGRISHA GSVKLSVYMT BACU002058/1-237 ---------- ---------- -MLILLGKGF TVTRGRISHS GSVKLSVYMT 301 350 ENSTTRP00000013176/1-541 LYTLTHVVLL IYEAKFFDPG QVLYTYESPA GYGLIGLQVA AYVWFCYAVL bmy_17403T0/1-541 LYTLTHVALL IYEAEFFDPG QVLYTYESPA GYGLIGLQVA AYVWFCYAVL ENSBTAP00000052283/1-563 LYTLTHVALL IYEAEFFDPG QVLYTYESPA GYGLIGLQVA AYVWFSYAVL ENSP00000301204/1-493 LYTLTHVVLL IYEAEFFDPG QVLYTYESPA GYGLIGLQVA AYVWFCYAVL BACU002058/1-237 LYTLTHVALL IYEAEFFDPG QVLYTYESPA GYGLIGLQVA AYVWFCYAVL 351 400 ENSTTRP00000013176/1-541 ISLRHFPEKQ PFYLPFFAAY TLWFFAVPVM ALIANFGIPK WAREKIVNGI bmy_17403T0/1-541 ISLRHFPEKQ PFYVPFFAAY TLWFFAVPVM ALIANFGIPK WAREKIVNGI ENSBTAP00000052283/1-563 VSLRHFPEKQ PFYVPFFAAY TLWFFAVPVM ALIANFGIPK WAREKIVNGI ENSP00000301204/1-493 VSLRHFPEKQ PFYVPFFAAY TLWFFAVPVM ALIANFGIPK WAREKIVNGI BACU002058/1-237 ISLRHFPEKQ PFYVPFFAAY TLWFFAVPVM ALIANFGIPK WAREKIVNGI 401 450 ENSTTRP00000013176/1-541 QLGIHLYAHG VFLIMTRPSA ANKNFPYHVR TSQIASAGAP GPGGSQSADK bmy_17403T0/1-541 QLGIHLYAHG VFLIMTRPSA ANKNFPYHVR TSQIASAGAP GPGGSQSADK ENSBTAP00000052283/1-563 QLGIHLYAHG VFLIMTRPSA ANKNFPYHVR TSQIASAGAP GPGGSQSADK ENSP00000301204/1-493 QLGIHLYAHG VFLIMTRPSA ANKNFPYHVR TSQIASAGVP GPGGSQSADK BACU002058/1-237 QLGIHLYAHG VFLIMTRPSA ANKNFPYHVR TSQIASAGAP GPGGSQSADK 451 500 ENSTTRP00000013176/1-541 AFPEHVYGNV TFISDSVPNF TELFSIPPPT SCAGKQVEET AVAAAVAPRG bmy_17403T0/1-541 AFPQHVYGNV TFISDSVPNF TELFSIPPPT SCAGKQVEET AVAAAVAPRG ENSBTAP00000052283/1-563 AFPQHVYGNV TFISDSVPNF TELFSIPPPA SCAGKQVEET AVAAAVAPRG ENSP00000301204/1-493 AFPQHVYGNV TFISDSVPNF TELFSIPPPA TSP------- ---------- BACU002058/1-237 AFPQHVYGNV TFISDSVPNF TELFSIPPPT SCP------- ---------- 501 550 ENSTTRP00000013176/1-541 RVVTMAERGT ASPPPSSRFP KAADPSWDGP TPPYQPLVPQ TAAPLTGFTE bmy_17403T0/1-541 RVVTMAEPGA ASPPPSSRFP KAADPSWDGP TPPYQPLVPQ TAAPHTGFTE ENSBTAP00000052283/1-563 RVVTMAEPGA ASPPPSSQFP KAADPSWDGP TPPYQPLVPQ TAAPHTGFTE ENSP00000301204/1-493 ---------- --------LP RAAP---DSG LPLFRDLRP- -PGPLRDL-- BACU002058/1-237 ---------- --------LP RAAP---DSG LPLFRDLRP- -PGPLRDL-- 551 600 ENSTTRP00000013176/1-541 YFSMHTARGT APPV bmy_17403T0/1-541 YFSMHTAGGT APPV ENSBTAP00000052283/1-563 YFSMHTAGGT APPV ENSP00000301204/1-493 ---------- ---- BACU002058/1-237 ---------- ----