KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:37 2014 Check: 00 .. Name: ENSP00000379290/1-584 Len: 772 Check: 5730 Weight: 1.00 Name: ENSBTAP00000052352/1-518 Len: 772 Check: 9341 Weight: 1.00 Name: ENSTTRP00000003582/1-594 Len: 772 Check: 8833 Weight: 1.00 Name: bmy_00255T0/1-526 Len: 772 Check: 9859 Weight: 1.00 Name: BACU011312/1-731 Len: 772 Check: 9996 Weight: 1.00 // 1 50 ENSP00000379290/1-584 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052352/1-518 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003582/1-594 ---------- ---------- ---------- ---------- ---------- bmy_00255T0/1-526 ---------- ---------- ---------- ---------- ---------- BACU011312/1-731 MLGDGSGRVQ YKAPETQSQS ARGSLSSGEM GLERKSLKYS MANAEDSSQQ 51 100 ENSP00000379290/1-584 ---------- ---------- ---------- --MGNQMSVP QRVEDQENEP ENSBTAP00000052352/1-518 ---------- ---------- ---------- --MGNQMSVP QRVEDQENDP ENSTTRP00000003582/1-594 ---------- ---------- ---------- --MGNQMSVP QRVEDQENDS bmy_00255T0/1-526 ---------- ---------- ---------- --MGNQMSVP QRVEDQENDL BACU011312/1-731 APDKEAKGRE PPGSVDSLAL GSTSWRHGAP RTMGNQMSVP QRVEDQENDS 101 150 ENSP00000379290/1-584 EAETY---QD NASALNGVPV VVSTHTVQHL EEVDLGISVK TDNVATSSPE ENSBTAP00000052352/1-518 EADTHKVTSG DACGQNGLPV ITSARTVQLY DEVDLGISMQ EDNVAASSPK ENSTTRP00000003582/1-594 EAH-----KG DKCGQNGMPV MVSTHSVQLY HEVDLETSVQ EDNVATSSPK bmy_00255T0/1-526 EADTHKVASG DECGQNGMPV MVSTRSVQLY HEVDLETSVQ EDNVATSSPK BACU011312/1-731 EADAHKVASG DECGQNGMPV MVSTRSVQLC HEVDLETSVQ EDNVATSSPK 151 200 ENSP00000379290/1-584 TTEISAVADA NGKNLGKEAK PEAPAAKSRF FLMLSRPVPG RTGDQAADSS ENSBTAP00000052352/1-518 TMETSAAAEA NGESLGKDAK PQAPAAKSRF FLTLSRPVPG RTGDQATDSS ENSTTRP00000003582/1-594 TMEISAVADA NGKNLGKEAK PQTPAAKSRF FLTLSRPVPG RTGDQATDSS bmy_00255T0/1-526 TMEISAVADA NGENLGKEAK PQTPAAKSRF FLTLSRPVPG RTGDQATDSS BACU011312/1-731 TMEISAIADA NGENLGKEAK AQTPAAKSRF FLTLSRPVPG RTGDQATDSS 201 250 ENSP00000379290/1-584 LGSVKLDVSS NKAPANKDPS ESWTLPVAAG PGQDTDKTPG HAPAQDKVLS ENSBTAP00000052352/1-518 SGSVRLDVSS DKAPGNKDPS EPMALPVAAA PGHGPDKTPG QTPAQAEGLP ENSTTRP00000003582/1-594 TGPVKLDVSS DKALGNKDPS EPMALPVAAA LGCDPDKTPV QTPAQAEGPS bmy_00255T0/1-526 TGPVKLDVSS DKALGNKDPS EPMALPVAAA LGCDPDKTPV QTPAQAEGLS BACU011312/1-731 TGPVKLDVSS DKALGNKDPS EPMALPVAAA LGCDPDKTPV QTPAQAEGLS 251 300 ENSP00000379290/1-584 AARDPTLLPP ETGGAGGEAP SKPKDSSFFD KFFKLDKGQE KVPGDSQQEA ENSBTAP00000052352/1-518 ATPGPEHPPS ESGAA---AA AKPKDSSFFD KLFKLDKGRD KAPVDLPLEA ENSTTRP00000003582/1-594 ATWGPESRLS ESGGA---AP SKPKDSSFFD RLFKLDKGRD KALVDRQQEA bmy_00255T0/1-526 ATWGPESRLS ESRGA---AP SKPKDSSFFD RLFKLDKGRD EALVDRQQEA BACU011312/1-731 ATWGPESRLS ESGGT---AP SKPKDSSFFD RLFKLDKGRD EVLVDRQQEA 301 350 ENSP00000379290/1-584 KRAEHQDKVD EVPGLSGQSD DVPAGKDIVD GKEKEGQELG TADCSVPGDP ENSBTAP00000052352/1-518 ESTEHPHPAA EAPGLSKQSE DGPAERDLVD GKGKAGQEVP TVSCSVPGDP ENSTTRP00000003582/1-594 KSAEHHHPTA ETPGISTQSD DVPAERDIAD GTGKEGQEIP TVSCSVPGVP bmy_00255T0/1-526 ERAEHHHPAA ETPGFSTQSD DVPAERDIAD GTGKEGQEIP TVSCSVPGVP BACU011312/1-731 GRAERHHPAA ETPGFSTQSD DVPAERDIAD GTGKEGQEIP TVSCSVPGVP 351 400 ENSP00000379290/1-584 EGLETAKDDS QAAAIAENNN SIMSFFKTLV SPNKAETKKD PEDT------ ENSBTAP00000052352/1-518 EQLEIAKEDA Q----AE-NS SIMSFFKTLV SPHKAETKKD PEDTASKGES ENSTTRP00000003582/1-594 EELEIAKEDP Q----TENNN SIMSFLKTLV SPNKAETKKD LEDTASKAES bmy_00255T0/1-526 EELEIAKEDP Q----TENNN SIMSFFKTL- ---------- ---------- BACU011312/1-731 EELEIAKEDP Q----TENNN SIMSFFKTLV SPNKAETKKD LEDTASKTES 401 450 ENSP00000379290/1-584 ---------- ---------- ---------- ---------G AEKSPTTSAD ENSBTAP00000052352/1-518 VSDGQAGQKT SEVQAKGAKK KHLHSPRLGL AFRKFFRHKG EEKSAAPSAN ENSTTRP00000003582/1-594 VCDGQAGQKT SEIQAKGTKK KHLHSPRLGL AFRKFFRHKG AEKSPTTSAD bmy_00255T0/1-526 ---------- ---------- ---------- ---------G AEKSPATSAD BACU011312/1-731 ACDGQAGQKT SEIQAKGTKK KHLHSPRLGL AFRKFFRHKG AEKSPATSAD 451 500 ENSP00000379290/1-584 LKSDKANFTS QETQGAGKNS KGCNPSGHTQ SVTTPEPAKE GTKEKSGPTS ENSBTAP00000052352/1-518 LKSDKANVTL QEPQGAAKNS ---------- --TPTET--- -AKEKGGPSS ENSTTRP00000003582/1-594 LKSDKGNVMP QEPQGAAKNS ---------- --TSTETAKE GAKEKGGPTS bmy_00255T0/1-526 LKSDKGNVTP QEPQGAAKNS ---------- ---TTEIAKE GAKEKGGPTS BACU011312/1-731 LKSDKGNVTP QEPQGAAKNS ---------- --TSTEIAKE GAKEKGGPTS 501 550 ENSP00000379290/1-584 LPLGKLFWKK SVKEDSVPTG AEENVVCESP VEIIKSKEVE SALQTVDLN- ENSBTAP00000052352/1-518 LPLGKLFWKK ---------- ---------- ---------- ---------- ENSTTRP00000003582/1-594 LPLGKLFWKK ---------- ----VVCESQ AEAVKSKEVE SALQTVDLSE bmy_00255T0/1-526 LPLGKLFWKK SVKEDSVPTS AEENV----- -EAVKSEEVE SALQTVDLSE BACU011312/1-731 LPLGKLFWKK SVKEDSVPTS AEENV----- -EAVKSEEVE SALQTVDLSE 551 600 ENSP00000379290/1-584 EGDAAPEPTE AKLKREESK- PRTSLMAFLR QMSVKGDGGI THSEEINGKD ENSBTAP00000052352/1-518 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003582/1-594 EGDRTPEPTE ETLKSAERKT PRPSLMAFLR QM-------- ---------- bmy_00255T0/1-526 EGDCTPEPAE ETLKRAERKA PRPSLMALLR QM-------- ---------- BACU011312/1-731 EGDCTPEPAE ETLKRAERKA PRPSLMVLLR QMSVKGDGGI THSEEINGKD 601 650 ENSP00000379290/1-584 SSCQTSDSTE KTITPPEPE- -PTGAPQKGK EGSSKDKKSA AEMNKQKSNK ENSBTAP00000052352/1-518 ----TSDPTE KVVAPPQPEA AAAAAGQKGK EGPSKDKKAA AETNKQKGNR ENSTTRP00000003582/1-594 ----APEATE KAVVPPESE- -PAVAGQKGK EGACKDKKAS AETEKQKSSK bmy_00255T0/1-526 ----ASESTE KAVVPPESE- -PAAAGQKGK EGSSKDKKAS AETEKQKSSK BACU011312/1-731 SSYQASESTE KAVVPPESE- -PAAAGQKGK EGASKDRKAS AEPEKQKSSK 651 700 ENSP00000379290/1-584 QEAKEPAQCT EQATVDTNSL QNGDKLQKRP EKRQQSLGGF FKGL------ ENSBTAP00000052352/1-518 QEAKEPALGV EPAAAEANSL PNGDKPQKRP EKRRQSLGGF FKGL------ ENSTTRP00000003582/1-594 QEANEPAPRV E-APGEANSL RDGDKSQKRL EKRRPPLGGF FKGL------ bmy_00255T0/1-526 PEAKETAPXA EPAPVEVNSL RDGDKPQKRL EKRRQPLGGF FKGL------ BACU011312/1-731 PEAKETAPRA EPAPGEVNSL RDGDKPQKRL EKRRQPLGGF FKGLVGGRFA 701 750 ENSP00000379290/1-584 ------GP-- ---------- ---------K RMLDAQVQTD PVSIGPVGKS ENSBTAP00000052352/1-518 ------GP-- ---------- ---------K RMLDAQVQTD PVSIGPAGKS ENSTTRP00000003582/1-594 ------GP-- ---------- ---------K RMLDAQVQTD PVSIGPVGKS bmy_00255T0/1-526 ------GP-- ---------- ---------K QMLDAQVQTD PVSIGPVGKS BACU011312/1-731 SSFWAFGPGV WWVPPPKGTG WPGGGWALAK HRGPAVCRAQ RARWAQASLF 751 800 ENSP00000379290/1-584 K--------- ---------- -- ENSBTAP00000052352/1-518 K--------- ---------- -- ENSTTRP00000003582/1-594 KCTWKSVFSN VMKKYPFQEL GL bmy_00255T0/1-526 K--------- ---------- -- BACU011312/1-731 R--------- -----GHRQV WC