KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:38 2014 Check: 00 .. Name: bmy_11473T0/1-560 Len: 560 Check: 1439 Weight: 1.00 Name: ENSP00000261407/1-487 Len: 560 Check: 9939 Weight: 1.00 Name: ENSBTAP00000052356/1-437 Len: 560 Check: 427 Weight: 1.00 Name: BACU003063/1-487 Len: 560 Check: 7635 Weight: 1.00 Name: ENSTTRP00000004537/1-487 Len: 560 Check: 9514 Weight: 1.00 // 1 50 bmy_11473T0/1-560 MLPFTQWPRS LARVFYCLLP GVHVQPAFPL GPAPHFLAGP QVPAPMPLVL ENSP00000261407/1-487 MASSAEGDEG TVVALAGVLQ SGFQELSLNK LATS---LGA SEQALRLIIS ENSBTAP00000052356/1-437 ---------- ---------- ---------- ---------- ---------- BACU003063/1-487 MASAAEGDVG AVAELATVLR WGFQDLSLNK LATS---LGA SEQALRLIIS ENSTTRP00000004537/1-487 MASAAEGDVG AAAELATVLR GGFQNLSLNK LATS---LGA SEQALRLIIS 51 100 bmy_11473T0/1-560 LFHGYPLALF YRHYLFYKDS YLIHLFHTFT GLSIAYYNFG NQLYHSLLCV ENSP00000261407/1-487 IFLGYPFALF YRHYLFYKET YLIHLFHTFT GLSIAYFNFG NQLYHSLLCI ENSBTAP00000052356/1-437 ---GYPFALF YRRYLFYKDS YLIHLFHTFT GLSIAYYNFG TQLYHSLLCI BACU003063/1-487 IFLGYPLALF YRHYLFYKDS YLIHLFHTFT GLSIAYYNFG NQLYHSLLCV ENSTTRP00000004537/1-487 IFLGYPLALF YRHYLFYKDS YLIHLFHAFT GLSIAYYNFG IQLYHSLLCV 101 150 bmy_11473T0/1-560 VLQFLILRLM GRTITAVLTT FCFQMAYLLA GYYYTATGNY DIKWTMPHCV ENSP00000261407/1-487 VLQFLILRLM GRTITAVLTT FCFQMAYLLA GYYYTATGNY DIKWTMPHCV ENSBTAP00000052356/1-437 VLQFLILRLM GRTITAVLTT FCVQMGYLLA GYYNTATGTY DIKWTMPHCV BACU003063/1-487 VLQFLILRLM GRTITAVLTT FCFQMAYLLA GYYYTATGNY DIKWTMPHCV ENSTTRP00000004537/1-487 VLQFLILRLM GRTITAVLTT FCFQMAYLLA GYYYTATGNY DIKWTMPHCV 151 200 bmy_11473T0/1-560 LTLKLIGLAI DYYDGGKDQK SLSSEQQKYA IRHVPSLLEV AGFSYFYGAF ENSP00000261407/1-487 LTLKLIGLAV DYFDGGKDQN SLSSEQQKYA IRGVPSLLEV AGFSYFYGAF ENSBTAP00000052356/1-437 LTLKLIGLAM DYYDGGKDQK SLTSEQQIYA IRGVPSLLEI SGFSYFYGAF BACU003063/1-487 LTLKLIGLAI DYYDGGKDQK SLSSEQQKYA IRHVPSLLEV AGFSYFYGAF ENSTTRP00000004537/1-487 LTLKLIGLVI DYYDGGKDQX SLSSEQQKYA IRGVPSLLEV AGFSYFYGAF 201 250 bmy_11473T0/1-560 LVGPQFSVNH YMKLVQGQLT DLPGKIPNST VPALRRLSLG LIYLVGYTLL ENSP00000261407/1-487 LVGPQFSMNH YMKLVQGELI DIPGKIPNSI IPALKRLSLG LFYLVGYTLL ENSBTAP00000052356/1-437 LVGPQFSMNH YMKLVRGELT DVPGKIPNST IPALRRLALG LVYLVGYTLL BACU003063/1-487 LVGPQFSVNH YMKLVQGQLT DLPGKIPNST IPALRRLSLG LIYLVGYTLL ENSTTRP00000004537/1-487 LVGPQFSMNH YMKLVQGQLT DLPGKIPNST VPALKRLSLG LVYLVGYTLL 251 300 bmy_11473T0/1-560 SQHITEDYLL TDDYENHSFW FRCLYMLVWG KVVLYKYVAC WLVTEGVCIL ENSP00000261407/1-487 SPHITEDYLL TEDYDNHPFW FRCMYMLIWG KFVLYKYVTC WLVTEGVCIL ENSBTAP00000052356/1-437 SPHITEDYLL SDDYENGSFW FRCMYMLIWG KFVLYKYVTC WLVTEGVCIL BACU003063/1-487 SQYITEDYLL TDDYENHSFW FRCLYMLVWG KVVLYKYVAC WLVTEGVCIL ENSTTRP00000004537/1-487 SQHITEDYLL TDDYENRSFW FRCLYMLVWG KVVLYKYVAC WLVTEGVCIL 301 350 bmy_11473T0/1-560 TGLGFHGLDE LGRAKWDTCA NMKVWLFETD PRFTGTIASF NINTNAWVAR ENSP00000261407/1-487 TGLGFNGFEE KGKAKWDACA NMKVWLFETN PRFTGTIASF NINTNAWVAR ENSBTAP00000052356/1-437 TGLGFNGLDE YGTAKWDACA NMKVWLFETT PRFTGTIASF NINTNAWVAR BACU003063/1-487 TGLGFHGLDE LGRAKWDTCA NMKVWLFETD PRFTGTIASF NINTNAWVAR ENSTTRP00000004537/1-487 TGLGFHGLDE LGRAKWDTCA NMKVWLFETD PRFTGTIASF NINTNAWVAR 351 400 bmy_11473T0/1-560 YFFKRLKFLG NKQLSQGLSL LFLSLWHGLH SGYLVCFQME FLIVIVERQA ENSP00000261407/1-487 YIFKRLKFLG NKELSQGLSL LFLALWHGLH SGYLVCFQME FLIVIVERQA ENSBTAP00000052356/1-437 YFFKRLKFLG NKVLSQGLSL LFLALWHGLH SGYLVCFQME FLIVIVERQA BACU003063/1-487 YFFKRLKFLG NKQLSQGLSL LFLSLWHGLH SGYLVCFQME FLIVIVERQA ENSTTRP00000004537/1-487 YFFKRLKFLG NKQLSQGLSL LFLSLWHGLH SGYLVCFQME FLIVIVERQA 401 450 bmy_11473T0/1-560 ASLIQDSPAL SSLASIRVLQ PLYYLVQQTI HWLFMGYSMT AFCLFTWDKW ENSP00000261407/1-487 ARLIQESPTL SKLAAITVLQ PFYYLVQQTI HWLFMGYSMT AFCLFTWDKW ENSBTAP00000052356/1-437 ASLIRDSPVL SRLASITVLQ PLYYLAQQTI HWLFMGYSMT AFCLFTWDKW BACU003063/1-487 ASLIQDSPAL SSLASVRVLQ PLYYLAQQTI HWLFMGYSMT AFCLFTWDKW ENSTTRP00000004537/1-487 ASLIQDSPAL SSLASVRVLQ PLYYLVQQTI HWLFMGYSMT AFCLFTWDKW 451 500 bmy_11473T0/1-560 LKSTIHIALC SQSNGAEERE VKENGIIYFP GGPEQDWCRN DSPPFPQHSF ENSP00000261407/1-487 LKVYKSIYFL ---------- ----GHIFF- ------LSLL FILPYIHKAM ENSBTAP00000052356/1-437 MKVYKSIYFL ---------- ----GHVFF- ------LSLL FILPYVRKVM BACU003063/1-487 LKVYKSVYFL ---------- ----GHVFF- ------LSLL FILPYVRKAM ENSTTRP00000004537/1-487 LKVYKSVYFL ---------- ----GHVFF- ------LSLL FTLPYVRKAL 501 550 bmy_11473T0/1-560 VPEHREPEAR VREDGAPPAV PLLPATSPSG AKGETLVGGV EGPIVSPLSS ENSP00000261407/1-487 VP--RKEKLK KME------- ---------- ---------- ---------- ENSBTAP00000052356/1-437 VP--RKEKLK KME------- ---------- ---------- ---------- BACU003063/1-487 VP--RKEKLK KME------- ---------- ---------- ---------- ENSTTRP00000004537/1-487 VP--RKEKLK KME------- ---------- ---------- ---------- 551 600 bmy_11473T0/1-560 PVHVALSLPL ENSP00000261407/1-487 ---------- ENSBTAP00000052356/1-437 ---------- BACU003063/1-487 ---------- ENSTTRP00000004537/1-487 ----------