KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:41 2014 Check: 00 .. Name: ENSP00000377140/1-694 Len: 720 Check: 3849 Weight: 1.00 Name: ENSBTAP00000052464/1-706 Len: 720 Check: 2810 Weight: 1.00 Name: BACU019102/1-660 Len: 720 Check: 7556 Weight: 1.00 Name: bmy_21711T0/1-571 Len: 720 Check: 1852 Weight: 1.00 Name: ENSTTRP00000005715/1-688 Len: 720 Check: 3552 Weight: 1.00 // 1 50 ENSP00000377140/1-694 -------MAK INTQYSHPSR THLKVKTSDR DLNRAENGLS RAHSSSEETS ENSBTAP00000052464/1-706 -------MAK ISTQYSHPTR THPSVRTMDR DLDCIENGLS RTHLPCEETS BACU019102/1-660 ---------- ---------- ---------S EKNSEERSVS CGR-PLGGSQ bmy_21711T0/1-571 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005715/1-688 METRGLAESK RSSFTSQGPA SSGRIQGKKS QPEKEERSAS RGR-PLGGSR 51 100 ENSP00000377140/1-694 SVLQPGIAME TRGLADSGQG SFTGQGIARL SRLIFLLRRW AARHVHHQDQ ENSBTAP00000052464/1-706 SELQEGIAME TRGLAESRQS SFTSQGPTRL SRLIISLRAW SARHLHQEDQ BACU019102/1-660 WHTEGNRG-S VGPLAGPHSY GSRLHSLQRL SRLIISPRAW AARHLRHEDQ bmy_21711T0/1-571 --------ME TRGLAESKRS SFSSQGPARL SRLI-SLRVW AARHLRHEDQ ENSTTRP00000005715/1-688 WHTEGNRGLW EIALAGPHSY GSRLHSL--L SRLIISLRAW AARHLRHEDQ 101 150 ENSP00000377140/1-694 GPDSFPDRFR GAELKEVSSQ ESNAQANVGS QEPADRGRSA WPLAKCNTNT ENSBTAP00000052464/1-706 RPDSFLERFR GAELQEVSSR ESHVQFNVGS QEPPDRGRSA WPLARNNTNT BACU019102/1-660 RPDSFLESFR GAELKEVSGR EGRAQSNTGS QGPPDRGRSD WPLARSNTNA bmy_21711T0/1-571 RPDSFLERFR GAELKEVSSR ESHVQSNAGS QGPPDRGRR- ---------- ENSTTRP00000005715/1-688 RPDSFLERFH GAELKEVSSR ESHVQNNAGS QEPPDRGRSD WPLARSNTNA 151 200 ENSP00000377140/1-694 SNNTEEE--- ---------- ------KKTK KKDAIVVDPS SNLYYRWLTA ENSBTAP00000052464/1-706 CNNSEKDDKA KKEEKEKKEE KKENPKKEEK KKDSVVMDPS SNMYYHWLTV BACU019102/1-660 CNSSEKE--- ---------- ---------K KKDTIVVDPS NNMYYHWLTI bmy_21711T0/1-571 ---------- ---------- ---------K KKDTIVVDPS NNMYYHWLTI ENSTTRP00000005715/1-688 CNNSEKE--- ---------- ---------K KKDTTVVDPS NNMYYHWLTI 201 250 ENSP00000377140/1-694 IALPVFYNWY LLICRACFDE LQSEYLMLWL VLDYSADVLY VLDVLVRART ENSBTAP00000052464/1-706 IAVPVFYNWC LLVCRACFDE LQSEHLMLWL VLDYSADILY GMDMLVRART BACU019102/1-660 IAVPIFYNWC LLVCRACFDE LQSGYLILWL VLDYSADFLY GFDVLVRAWT bmy_21711T0/1-571 IAVPIFYNWC LLVCRACFDE LQSEYLMLWL VLDYSADFLY GFDVLVRART ENSTTRP00000005715/1-688 IAVPIFYNWC LLVCRACFDE LQSEHLMLWL VLDYSADFLY GFDVLVRART 251 300 ENSP00000377140/1-694 GFLEQGLMVS DTNRLWQHYK TTTQFKLDVL SLVPTDLAYL KVGTNYPEVR ENSBTAP00000052464/1-706 GFLEQGLMVM DASRLWKHYT QTLHFKLDVL SLVPTDLAYF KLGMNYPELR BACU019102/1-660 GFLEQGLMVT DANRLWKHYT KTLHFKLDML SLVPTDLAYF KLGMNYPELR bmy_21711T0/1-571 -----GLMVT DANRLWRHYT KTLHFKLDML SLVPTDLAYF KLGMNYPELR ENSTTRP00000005715/1-688 GFLEQGLLVT DANRLWKHYT KTLHFKLDML SLVPTDLAYF KLGMNYPELR 301 350 ENSP00000377140/1-694 FNRLLKFSRL FEFFDRTETR TNYPNMFRIG NLVLYILIII HWNACIYFAI ENSBTAP00000052464/1-706 FNRLLKLARL FEFFDRTETR TNYPNMFRIG NLVLYILIII HWNACIYFAI BACU019102/1-660 FNRLLKLTRL FEFFDRTETR TNYPNMFRIG NLVLYILIII HWNACIYFAI bmy_21711T0/1-571 FNRLLKLTRL FKFFDRTETR TNYPNMFRIG NLVLYILIII HWNACIYFAI ENSTTRP00000005715/1-688 FNRLLKLARL FEFFDRTETR TNYPNMFRIG NLVLYILIII HWNACLYFAI 351 400 ENSP00000377140/1-694 SKFIGFGTDS WVYPNISIPE HGRLSRKYIY SLYWSTLTLT TIGETPPPVK ENSBTAP00000052464/1-706 SKFIGFGTDS WVYPNVSNPE YGRLSRKYIY SLYWSTLTLT TIGETPPPVK BACU019102/1-660 SKFIGFRTDS WVYPNISNPE YGRLSRKYIY SLYWSTLTLT TIGETPPPVK bmy_21711T0/1-571 SKFIGFGTDS WVYPNISNPE YGRLSRKYIY SLYWSTLTLT AIGETPPPVR ENSTTRP00000005715/1-688 SKFIGFGTDS WVYPNISNPE YGRLSRKYIY SLYWSTLTLT TIGETPPPVK 401 450 ENSP00000377140/1-694 DEEYLFVVVD FLVGVLIFAT IVGNVGSMIS NMNASRAEFQ AKIDSIKQYM ENSBTAP00000052464/1-706 DEEYLFVVID FLVGVLIFAT IVGNVGSMIS NMNASRAEFQ AKIDSIKQYM BACU019102/1-660 DEEYLFVVLD FLVGVLIFAT IVGNVGSMIS HMNSSRTEFQ AKSDSIKQYM bmy_21711T0/1-571 DEEYLFVVLD FLVGVLIFAT IVGNVGSMIS HMNASRAEFQ AKSDSVKQYM ENSTTRP00000005715/1-688 DEEYLFVVLD FLVGVLIFAT IVGNVGSMIS HMNASQAEFQ AKSDSVKQYM 451 500 ENSP00000377140/1-694 QFRKVTKDLE TRVIRWFDYL WANKKTVDEK EVLKSLPDKL KAEIAINVHL ENSBTAP00000052464/1-706 QFRKVTKDLE TRVIRWFDYL WANKKTVDEK EVLKSLPDKL KAEIAINVHL BACU019102/1-660 QFRKVTKDLE TRVIRWFDYL WANKKTVDEK EVLKSLPDKL RAEIAINVHL bmy_21711T0/1-571 QFRKVTKDLE TRVFRWFDYL WANKKTVDEK EVLKSLPDKL RAEIAIGVHL ENSTTRP00000005715/1-688 QFRKVTKDLE TRVIRWFDYL WANKKTVDER EVLKCLPDKL RAEIAISVHL 501 550 ENSP00000377140/1-694 DTLKKVRIFQ DCEAGLLVEL VLKLRPTVFS PGDYICKKGD IGKEMYIINE ENSBTAP00000052464/1-706 DTLRKVRIFQ DCEAGLLVEL VLKLRPAVFS PGDYICKKGD IGREMYIIKE BACU019102/1-660 DTLKKIHIFQ DCEAGLLVEL VLKLWPAVFS PGDYICKKGD IGREMYITKE bmy_21711T0/1-571 DTLRKVHIFQ DCEAGLLVEL VLKLRPAVFS PGDYICKKGD IGREMYIIKE ENSTTRP00000005715/1-688 DTLRKVRIFQ DCEAGLLVEL VLKLRPAVFS PGDYICKKGD IGREMYIIKE 551 600 ENSP00000377140/1-694 GKLAVVADDG VTQFVVLSDG SYFGEISILN IKGSKSGNRR TANIRSIGYS ENSBTAP00000052464/1-706 GKLAVVAEDG ITQFVVLGDG SYFGEISILN IKGSKSGNRR TANIRSIGYS BACU019102/1-660 GKLAVVAEDG ITQFVVLSDG SYFGEISILN IKRSKSGNRR TANIRSIGYS bmy_21711T0/1-571 GKLAVVAEDG ITQFVVLSDG SYFGEISILN IKGSKSGNRR TANIRSIGYS ENSTTRP00000005715/1-688 GKLAVVAEDG VTQFVVLSDG SYFGEISILN IKGSKSGNRR TANIRSLGYS 601 650 ENSP00000377140/1-694 DLFCLSKDDL MEALTEYPEA KKALEEKGRQ ILMKDNLIDE ELARAGADPK ENSBTAP00000052464/1-706 DLFCLSKDDL MEALTEYPEA KKALEEKGRQ ILMKDNLIDE ELAKAGADPK BACU019102/1-660 DLLCLSKDDL MEALTEYPEA KKALEEKGRQ ILMKDNLIDE ELAKAGADPQ bmy_21711T0/1-571 DLFCLSKDDL MEALTEYPEA KKALEEKGRQ ILMKDNLIDE ELAKAGAGPP ENSTTRP00000005715/1-688 DLFCLSRDDL MEALTEYPEA KKALEEKGRQ ILMKDNLIDE ELAKAGADPQ 651 700 ENSP00000377140/1-694 DLEEKVEQLG SSLDTLQTRF ARLLAEYNAT QMKMKQRLSQ LESQVKGGGD ENSBTAP00000052464/1-706 DIEEKVEHLE TSLDSLQTRF ARLLAEYNAT QMKVKQRLSQ LESQVKMG-- BACU019102/1-660 DIEEKVEHLE SSLDTLQTRF ARLLAEYSAT QMTMKQRLSQ LESQVKIG-- bmy_21711T0/1-571 G--------- ---------- ---------- --------HR GESRAP-G-- ENSTTRP00000005715/1-688 GIEERVEHLE SSLDTLRTRF ARLLAEYSAS QMRVKQRLSQ LENQAKLG-- 701 750 ENSP00000377140/1-694 KPLADGEVPG DATKTEDKQQ ENSBTAP00000052464/1-706 --LPPD---G DAPQTEASQP BACU019102/1-660 --LPPD---G DAPQTEAKQQ bmy_21711T0/1-571 --ILPG---H PADQVCTAPG ENSTTRP00000005715/1-688 --LPPD---G DAPQTEAKQR