KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:42 2014 Check: 00 .. Name: ENSTTRP00000010891/1-371 Len: 450 Check: 2295 Weight: 1.00 Name: BACU020440/1-342 Len: 450 Check: 4007 Weight: 1.00 Name: ENSP00000265846/1-374 Len: 450 Check: 4779 Weight: 1.00 Name: bmy_08938T0/1-434 Len: 450 Check: 891 Weight: 1.00 Name: ENSBTAP00000052493/1-373 Len: 450 Check: 3757 Weight: 1.00 // 1 50 ENSTTRP00000010891/1-371 MAKERRKAVL ELLQRPANAR CADCGA---- ---------- ---------- BACU020440/1-342 ---------- ---------- ---------- ---------- ---------- ENSP00000265846/1-374 MAKERRRAVL ELLQRPGNAR CADCGA---- ---------- ---------- bmy_08938T0/1-434 MAKERRKAVL ELLQRPANAR CADCGAPALQ PAAGGGSTCR LHVDPVGTGA ENSBTAP00000052493/1-373 MAKERRKAVL ELLQRPGNAR CADCGA---- ---------- ---------- 51 100 ENSTTRP00000010891/1-371 ---------- ---------- ---------- ------PXXX XXXXXXXXXX BACU020440/1-342 ---------- ---------- ---------- --------PD WASYTLGVFI ENSP00000265846/1-374 ---------- ---------- ---------- ------PDPD WASYTLGVFI bmy_08938T0/1-434 PPPTRPHCSG AGGQFSVLSP LGDPRGQRPL NVWPCLPDPD WASYTLGVFI ENSBTAP00000052493/1-373 ---------- ---------- ---------- ------PDPD WASYTLGVFI 101 150 ENSTTRP00000010891/1-371 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XFMTSRGNHV ARAAFESKVP BACU020440/1-342 CLSCSGIHRN IPQVSKVKSV RLDAWEDAQV EVRPGRASEI TQMRWGG--S ENSP00000265846/1-374 CLSCSGIHRN IPQVSKVKSV RLDAWEEAQV EFMASHGNDA ARARFESKVP bmy_08938T0/1-434 CLSCSGIHRN IPQVSKVKSV RLDAWEDAQV EFMTSRGNHV ARATFESKVP ENSBTAP00000052493/1-373 CLSCSGIHRN IPHVSKVKSV RLDTWEDVQV EFMASRGNAI ARATFESRVP 151 200 ENSTTRP00000010891/1-371 -FY------- -YRPSASDCQ LLREQWIRAK YERQEFTYPE RQEPYSAGYR BACU020440/1-342 GFAGAAGGRT VSQPVPSLPR LLREQWIRAK YERQEFTHPE RQEPYSAGYQ ENSP00000265846/1-374 SFY------- -YRPTPSDCQ LLREQWIRAK YERQEFIYPE KQEPYSAGYR bmy_08938T0/1-434 AFY------- -YRPSASDCQ LLREQWIRAK YERQEFTHPE RQEPYSAGYR ENSBTAP00000052493/1-373 PFY------- -YRPSASDCP LLREQWIRAK YERQEFAHPE RQEPYSAGYR 201 250 ENSTTRP00000010891/1-371 EGFLWKRGRD NGQFLSRKFV LTEREGALKY FNRSDXXXXX XXXXXXXXXX BACU020440/1-342 EGFLWKRGRD NGQFLSRKFV LTEREGALKY FNRSDAKEPK AIMKIEHLNA ENSP00000265846/1-374 EGFLWKRGRD NGQFLSRKFV LTEREGALKY FNRNDAKEPK AVMKIEHLNA bmy_08938T0/1-434 EGFLWKRGRD NGQFLSRKFV LTEREGALKY FNRSDAKEPK AIMKIEHLNA ENSBTAP00000052493/1-373 EGFLWKRGRD NGQFLSRKFV LTEREGALKY FNRSDAKEPK AVMKIEHLNA 251 300 ENSTTRP00000010891/1-371 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXMVDWF -ALRAARFHY BACU020440/1-342 TFQPAKIGHP HGLQVTYLKD NSTRNIFVYH EDGKVGARLG DGGWTTPTVS ENSP00000265846/1-374 TFQPAKIGHP HGLQVTYLKD NSTRNIFIYH EDGKEIVDWF NALRAARFHY bmy_08938T0/1-434 TFQPAKIGHP HGLQVTYLKD NSTRNIFVYH EDGKEMVDWF NALRAARFHY ENSBTAP00000052493/1-373 TFQPAKIGHP HGLQVTYLKD NSTRNIFVYH EDGKEMVDWF NALRAARFHY 301 350 ENSTTRP00000010891/1-371 LQVAFP---- --GASDADLV PKLSRNYLQE G--YMEKTGP KQTEG-RKRW BACU020440/1-342 GEPSGPPGWQ ARGQGAARPP CHGCRRLARR GRAWGAACGS EQHQGGEKPP ENSP00000265846/1-374 LQVAFP---- --GAGDADLV PKLSRNYLKE G--YMEKTGP KQTEGFRKRW bmy_08938T0/1-434 LQVAFP---- --GASDADLV PKLSRNYLQE G--YMEKTGP KQTEGFRKRW ENSBTAP00000052493/1-373 LQVAFP---- --GASNADLV PKLSRNYLQE G--YMEKTGP K-TEGFRKRW 351 400 ENSTTRP00000010891/1-371 FPMNNWRLMY FKDPLDAFAR GEVFIGSRES GYTVLDGLPP STQGHHWPHG BACU020440/1-342 LPAQPG---- -PPTQDAFAR GEVFIGSRES GYTVLDGLPP STQGHHWPHG ENSP00000265846/1-374 FTMDDRRLMY FKDPLDAFAR GEVFIGSKES GYTVLHGFPP STQGHHWPHG bmy_08938T0/1-434 FTMDDRRLMY FKDPLDAFAR GEVFIGSRES GYTVLDGLPP STQGHHWPHG ENSBTAP00000052493/1-373 FTMDDRRLMY FKDPLDAFAR GEVFIGSRES GYTVLDGLPP STQGHHWPHG 401 450 ENSTTRP00000010891/1-371 ITIVTPERRF LLACETESEQ RAWMEAFRKV VDRPMLPQEY AVEAHFKHKP BACU020440/1-342 ITIVTPERRF LLACETESEQ RAWMEAFRKV VDRPMLP--- ---------- ENSP00000265846/1-374 ITIVTPDRKF LFACETESDQ REWVAAFQKA VDRPMLPQEY AVEAHFKHKP bmy_08938T0/1-434 ITIVTPERRF LLACETESEQ RAWMEAFRKV VDRPMLPQEY AVEAHFKHKP ENSBTAP00000052493/1-373 ITIVTPERRF LLACETESEQ RAWMEALQKV VDRPMLPQEY AVEAHFKHKP