KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:45 2014 Check: 00 .. Name: ENSP00000332812/1-395 Len: 407 Check: 9054 Weight: 1.00 Name: ENSBTAP00000052511/1-406 Len: 407 Check: 9732 Weight: 1.00 Name: ENSTTRP00000011782/1-394 Len: 407 Check: 1147 Weight: 1.00 Name: bmy_16539T0/1-403 Len: 407 Check: 3905 Weight: 1.00 Name: BACU005414/1-266 Len: 407 Check: 9879 Weight: 1.00 // 1 50 ENSP00000332812/1-395 MSANATLKPL CPILEQMSRL QSHSNTSIRY IDHAAVLLHG LASLLGLVEN ENSBTAP00000052511/1-406 MLANVTTKPL CPLLEQMSRL QSHSNSSIRY MDHVSVLLHG LASLLGLVEN ENSTTRP00000011782/1-394 MSANVTMKPL CPLLEQMSHL QSHSNSSIRY MDHVSVLLHE LASLLSLVEN bmy_16539T0/1-403 MSANVTMKPL CPLLEQMSRL QSHSNSSIRY IDHASVLLHG LASLLGLVEN BACU005414/1-266 MSANVTMKPL CPLLEQMSRL QSHSNSSIRY IDHASVLLHG LASLLGLVEN 51 100 ENSP00000332812/1-395 GVILFVVGCR MRQTVVTTWV LHLALSDLLA SASLPFFTYF LAVGHSWELG ENSBTAP00000052511/1-406 GLILFVVGCR MRQTVVTTWV LHLALSDLLA TASLPFFTYF LAVGHSWKLG ENSTTRP00000011782/1-394 GLILFVVGCC MRQTVVTT-V LHLALSDLLA TASLPFFTYF LAVGHSWELS bmy_16539T0/1-403 GLILFVVGCC MRQTVVTTWV LHLALSDLLA TASLPFFTYF LAVGHSWELG BACU005414/1-266 GLILFVVGCC MRQTVVTTWV LHLALSDLLA TASLPFFTYF LAVGHSWELG 101 150 ENSP00000332812/1-395 TTFCKLHSSI FFLNMFASGF LLSAISLDRC LQVVRPVWAQ NHRTVAAAHK ENSBTAP00000052511/1-406 TTFCKLHSSI FFLNMFASGF LLSAISLDRC LQVVRPVWAQ NHRTVAAAHK ENSTTRP00000011782/1-394 TTFCKLHSSI FFLNMFASGF LLSAISLDRC LQVLRPVWAQ NHRTVAVAHR bmy_16539T0/1-403 TAFCKLHSSI FFLNMFASGF LLSAISLDRC LQVVRPVWAQ NHRTVAVAHR BACU005414/1-266 TTFCKLHSSI FFLNMFASGF LLSAISLDRC LQVLRPVWAQ NHRTVAVAHR 151 200 ENSP00000332812/1-395 VCLVLWALAV LNTVPYFVFR DTISRLDGRI MCYYNVLLLN PGPDRDATCN ENSBTAP00000052511/1-406 VCLALWVLAV INTVPYFVFR DTIPRLDGRI MCYYNVLLLS PGPDRNATCD ENSTTRP00000011782/1-394 VCLALWALAV LNTVPYFIFR DTIPRVDGRI MCYYNVLLLN PGPDRDATCN bmy_16539T0/1-403 VCLALWALAV LNTVPYFIFR DTIPRVDGRI MCYYNVLLLN PGPDRDATCN BACU005414/1-266 VCLALWALAV LNTVPYFIFR DTIPRVDGRI MCYYNVLLLN PGPDRDATCN 201 250 ENSP00000332812/1-395 SRQVALAVSK FLLAFLVPLA IIASSHAAVS LRLQHRGRRR PGRFVRLVAA ENSBTAP00000052511/1-406 SRQTALAVSK FLLAFAVPLA IIASSHLAVS AQLRHRGRRR SSRFVRLVAA ENSTTRP00000011782/1-394 SRQMALAVSK FLLAFAVPLA IIASSHVAVS AHLRHRGRRR PGRFVRLVAA bmy_16539T0/1-403 SRQTALAVSK FLLAFAVPLA IIASSHAAVS VHLRHRGRRR PGRFVRLVAA BACU005414/1-266 SRQTALAVSK FLLAFAVPLA IIASSHAAKA V--------- ---------- 251 300 ENSP00000332812/1-395 VVAAFALCWG PYHVFSLLEA RAHANPGLRP LVWRGLPFVT SLAFFNSVAN ENSBTAP00000052511/1-406 VVAAFALCWG PYHVFSVMEA RAHANPSLRP LVWRGLPFVT SLAFINSVIN ENSTTRP00000011782/1-394 VVAAFALCWG PYHVFSVLEA RAHADPALRP LVWRGLPFVS SLAFVNSVVN bmy_16539T0/1-403 VVAAFALCWG PYHVFSVLEA RAHADPALRP LVWRGLPFVT SLAFVNGVVN BACU005414/1-266 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000332812/1-395 PVLYVLTCPD MLRKLRRSLR TVLESVLVDD SELGGAGSSR RRRTSSTARS ENSBTAP00000052511/1-406 PLLYVLTCPD VLRKLRRSLR SVLESVLVDD SDLAAGGSNR RRRRASS-TN ENSTTRP00000011782/1-394 PLLYVFTCPD VLRKLRRSLR SVLESVLVDD SELGGXXXXX XXXXSSTNTS bmy_16539T0/1-403 PLLYVFTCPD VLRKLRRSLR SVLESVLVDD SELGGGGSSR RRRRTSS-TS BACU005414/1-266 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000332812/1-395 ASPLAL---C SRPEEPRGPA RLLGWLLGSC AASPQ----- ----TGPLNR ENSBTAP00000052511/1-406 ASASSISESS GHRLHALWPA RLLDWLRGDP AAPPQRDRTP SQDERGPLNR ENSTTRP00000011782/1-394 ASSFSL---R GRGLSPLGPA GLLDWLRGSR AAPPQ----- ----RGPLNR bmy_16539T0/1-403 ASSFSL---G GRSLPPLGPA GLLGWLRGGR AASPQRDRAR SQHERGPLNR BACU005414/1-266 ---------- ---------- --VGTMRGKV AAPPQRDRAR SQDERGPLNR 401 450 ENSP00000332812/1-395 ALSSTSS ENSBTAP00000052511/1-406 ALSTTSG ENSTTRP00000011782/1-394 APRTTSA bmy_16539T0/1-403 ALRTTSA BACU005414/1-266 ALRTTSA