KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:46 2014 Check: 00 .. Name: ENSP00000263985/1-557 Len: 680 Check: 4914 Weight: 1.00 Name: BACU013571/1-542 Len: 680 Check: 3845 Weight: 1.00 Name: ENSTTRP00000010125/1-557 Len: 680 Check: 5527 Weight: 1.00 Name: bmy_07159T0/1-576 Len: 680 Check: 6136 Weight: 1.00 Name: ENSBTAP00000052518/1-399 Len: 680 Check: 2456 Weight: 1.00 // 1 50 ENSP00000263985/1-557 MAAPMLRWGC RGRRWAFARV DGGSCHRRGA PTGSTSNQIR GESSVAQQPL BACU013571/1-542 MATPMLRWCC PGRRWIFAGI GGGSRHGRGV PTGSTSSGKR GQSSVAQQPL ENSTTRP00000010125/1-557 MATPVLRWWC PGRRWVFAGI GGVSRHGRGV PTGSTSSGKR GQSSVAQQPL bmy_07159T0/1-576 MATHMFRWCC PGRRWVFAGI GGGSRHGRGV PTGSTSGGKR GQSSVAHQPL ENSBTAP00000052518/1-399 MAAPMLRWCC PGRRFAFARV GCGSCHRRGP PTGSTSNGKR GQSSVAQQPH 51 100 ENSP00000263985/1-557 HTAQKTRKGE HKWAAVVGLE IHAQISSNSK LFSGSQVRFS APPNSLVSFF BACU013571/1-542 ITAQKPRKGE REWAAVVGLE IHAQIASNSK LFSGSQVDFA APPNSLVSFF ENSTTRP00000010125/1-557 ITAQKPRKGE REWAAVVGLE IHAQIASNSK LFSGSQVDFA APPNSLVSFF bmy_07159T0/1-576 ITAQKPRKGE REWAAVVGLE IHAQIASNSK LFSGSQVDFA APPNSLVSFF ENSBTAP00000052518/1-399 ITAQKPRKGE PEWAAVVGLE IHAQIASNSK LFSGSQVCFA APPNSLVSFF 101 150 ENSP00000263985/1-557 DASLPGTLP- ---------- ---------- ---------- ---------- BACU013571/1-542 DASLPGTLP- ---------- ---------- ---------- ---------- ENSTTRP00000010125/1-557 DASLPGTLP- ---------- ---------- ---------- ---------- bmy_07159T0/1-576 DASLPGTLPS VTNVSKQKGN EEGGISDVNK SKVMPALWEL TNNAVTMFYV ENSBTAP00000052518/1-399 DASLPGTLP- ---------- ---------- ---------- ---------- 151 200 ENSP00000263985/1-557 ---------- ---------- ---------- ---------- ---------- BACU013571/1-542 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010125/1-557 ---------- ---------- ---------- ---------- ---------- bmy_07159T0/1-576 GDFFLNVYAN RSERDPAPLR KDNVNAYVNL HDFMACHEAS NEMPYTYWMH ENSBTAP00000052518/1-399 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000263985/1-557 ---VLNRRCV EAAVMTGLAL NCHINKKSLF DRKHYFYADL P--------- BACU013571/1-542 ---VLNRRCV EAAVMTGLAL DCHINRKSLF DRKHYFYADL P--------- ENSTTRP00000010125/1-557 ---VLNRRCV EAAVMTGLAL DCHINRRSLF DRKHYFYADL P--------- bmy_07159T0/1-576 KLQVLNRRCV EAAVMTGLAL DCHINRKSLF DRKHYFYADL PFPALTYRRV ENSBTAP00000052518/1-399 ---VLNRRCV EAAVMTGLAL DCHINRKSLF DRKHYFYADL P--------- 251 300 ENSP00000263985/1-557 --------AG YQITQQRLPI AVNGSLIYGV CAGKKQSQVI PKTVRIKQIQ BACU013571/1-542 --------AG YQITQQRLPI AVNGSLAYSV CVGQRWSQMV TRTVGVKQIQ ENSTTRP00000010125/1-557 --------AG YQITQQRLPI AVNGSLAYSV CVGKRRSQMV TRTARVKQIQ bmy_07159T0/1-576 TLAHICVQAG YQITQQRLPI AVNGSLAYSV CVGKRWSQIV TRTVRVKQIQ ENSBTAP00000052518/1-399 --------AG YQITQQRLPI AVNGSLAYSV YVGRKPSQMV TRTVRVKQIQ 301 350 ENSP00000263985/1-557 LEQDSGKSLH DNLRSQTLID LNRAGVGLLE VVLEPDMSCG EEAATAVREL BACU013571/1-542 LEQDSGKSLH DNLRSQTLID LNRAGVGLLE VVLEPDMSCG EEAAAAIREL ENSTTRP00000010125/1-557 LEQDSGKSLH DSLRSQTLID LNRAGVGLLE VVLEPDMSCG EEAAAAVREL bmy_07159T0/1-576 LEQDSGKSLH DNLRSQTLID LNRAGVGLLE VVLEPDMSCG EEAAAAIREL ENSBTAP00000052518/1-399 LEQDSGKSLH DDLRSQTLID LNRAGIGLLE LVLEPDMSCG EEAATAVREL 351 400 ENSP00000263985/1-557 QLILQALGTS QANMAEGQLR VDANISVHHP GEPLGVRTEV KNLNSIRFLA BACU013571/1-542 QLILQALGTS QANMAEGQLR VDANISVHHP GEPLGVRTEV KNLNSARFLA ENSTTRP00000010125/1-557 QLILQALGTS QANMAEGQLR VDANISVHNP GEPLGIRTEV KNLNSARFLA bmy_07159T0/1-576 QLILQALGTS QANMAEGQLR VDANISVHHS GEPLGVRTEV KNLNSAR--- ENSBTAP00000052518/1-399 QLILQALGTS QANMAEGQLR VDANISVHRP GEPLGIRTEV KNLNSARFLA 401 450 ENSP00000263985/1-557 KAIDYEIQRQ INELENGGEI LNETRSFHHK LGCTMSMRDK EGKQDYRFMP BACU013571/1-542 KAIDYEIQRQ ISELENGGKI LNETRSFDYK LG-------- -------FMP ENSTTRP00000010125/1-557 KAIDYEIQRQ INELENGGKI LNETRSFDYK LGCTVPMRDK EGKQDYRLMP bmy_07159T0/1-576 ---------- ---------- ---------- --CTVPMRDK EGKQDYRFMP ENSBTAP00000052518/1-399 KAIDYEIQRQ INELENGGEI LNETRSFDFK LGCTVPMRDK EGKQDYRFMP 451 500 ENSP00000263985/1-557 EPNLPPLVLY DATSLPAGAD PQQVINIDQI RETLPELPS- -VTREKLVQQ BACU013571/1-542 EPNLPPLLLY DSGSLPTGAD PQQVIDIDQL REQLPELPR- -VTREKLVRQ ENSTTRP00000010125/1-557 EPNLPPLLLY DSGSLPPGTD PQQVINIDQL REQLPELPR- -VTREKLVQQ bmy_07159T0/1-576 EPNLPPLLLY DLGSLPTGAD PQQVIDIDQL REQLPELPH- -VTREKLVRQ ENSBTAP00000052518/1-399 AQPAPA---- ---------- -------AAL RLRVPPLRRR PAAGDQHRPA 501 550 ENSP00000263985/1-557 YGMLLEHSFT LLNEVGLLEF FQNVIKETRA EPKKVTSW-- -----VLNTF BACU013571/1-542 YGMRPEHSFA LLNEVGLLEF FQNVMKETRA EPKKVTSW-- -----VLNTF ENSTTRP00000010125/1-557 YGMLPEHSFA LLNEVGLLEF FQNVIKETRA EPKKVTSW-- -----VLNTF bmy_07159T0/1-576 YGMLPEHSFA LL-------- YWSLEDASEG AVKNLTPWRC AQGFSILSRA ENSBTAP00000052518/1-399 AGASP----- ---------- --------RA APRDPPE--- ---------- 551 600 ENSP00000263985/1-557 LG---YLKQQ NLAVSESPVT PSALAELLDL LDSRTISSSA AKQVFEELWK BACU013571/1-542 LG---FLKQQ NLAVSESPVT PSALAELLDL LDRKAISSSA AKQVFEELWR ENSTTRP00000010125/1-557 LG---FLKQQ NLAVSESPVT PSALAELLDL LDRKAISSSA AKQVFQELWR bmy_07159T0/1-576 VGLCSFLCHG NIKVTQRPGE WHFVTAVFCL SVREDVESFS AASLGDEV-- ENSBTAP00000052518/1-399 ---------- ---------- ---------- -ARATVRDAA RAQ------- 601 650 ENSP00000263985/1-557 REGKTPGQIV SEKQLELMQD QGALEQLCHS VMEAHPQVVM DVKNRNPRAI BACU013571/1-542 SKGKTPAQMV AEKQLELMQD AEALELLCRS TLETHPQVVT DVKKGNPRAI ENSTTRP00000010125/1-557 SKGKTPAQIV AEKQLELMQD AEALEQLCCS TLEAHPQVVT DVKKGNPRAI bmy_07159T0/1-576 ---------- --SATLIMRS AESLETLGFC IVIDR----- ---------- ENSBTAP00000052518/1-399 ---------- -------LRP AE-------- ---------- ---------- 651 700 ENSP00000263985/1-557 NKLIGLVRKA TQSRADPVMI KEILEKKLSL BACU013571/1-542 NKLIGLVRRA TLGRADPTVI KEVLERQLSS ENSTTRP00000010125/1-557 NKLIGLVRRA TLGRADPTVI KEVLERQLSS bmy_07159T0/1-576 ---------- ---------- ---------- ENSBTAP00000052518/1-399 ---------- ---------- ----------