KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:01:47 2014 Check: 00 .. Name: ENSTTRP00000004340/1-707 Len: 717 Check: 4479 Weight: 1.00 Name: ENSBTAP00000052546/1-705 Len: 717 Check: 4753 Weight: 1.00 Name: ENSP00000261556/1-707 Len: 717 Check: 4283 Weight: 1.00 Name: bmy_20138T0/1-602 Len: 717 Check: 3115 Weight: 1.00 // 1 50 ENSTTRP00000004340/1-707 MGLHGDGGGP AGGRAARAGP RRSGGLRGGV AVFAAVAAVF TLTLPPSVPG ENSBTAP00000052546/1-705 ---MATAGAR LGGQAARVGA RGAGGLCGGV AVFAAVAAVF TLTLPPSLPG ENSP00000261556/1-707 MSPHGDGRGQ AQGRAVRVGL RRSGGIRGGV AVFAAVAAVF TFTLPPSVPG bmy_20138T0/1-602 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004340/1-707 GDSGELITAA HELGVAHPPG YPLFTLVAKL AIILFPFGSV AYRVNLLCGL ENSBTAP00000052546/1-705 GDSGELITAA HELGVAHPPG YPLFTLVAKL AILLFPFGSV AYRVNLLCGL ENSP00000261556/1-707 GDSGELITAA HELGVAHPPG YPLFTLVAKL AITLFPFGSI AYRVNLLCGL bmy_20138T0/1-602 ----ELITAA HELGVAHPPG YPLFTLVAKL AIILFPFGSV AYRVNLLCGF 101 150 ENSTTRP00000004340/1-707 FGAVAAALLF FTVF------ ---RLSGSYA GGILAAGVFS FSRLTWQWSI ENSBTAP00000052546/1-705 FGAAAAALLF FTVF------ ---RLSGSYA GGILAAGVFS FSRLTWQWSI ENSP00000261556/1-707 FGAVAASLLF FTVF------ ---RLSGSSA GGILAAGVFS FSRLTWQWSI bmy_20138T0/1-602 FGAVAAALLF FTVFRRFHVI CICRLSGSYA GGILAAGVFS FSRLTWQWSI 151 200 ENSTTRP00000004340/1-707 AAEVFSLNNL FVGLLMALTV HFEEATTAQE RSKIAKIGAF CCGLSLCNQH ENSBTAP00000052546/1-705 AAEVFSLNNL FVGLLMALTV HFEEAATAQE RSKIAKIGAL CCGLSLCNQH ENSP00000261556/1-707 AAEVFSLNNL FVGLLMALTV HFEEAATAKE RSKVAKIGAF CCGLSLCNQH bmy_20138T0/1-602 AAEVFSLNNL FVGLLMALTV HFEEAATAQE RSKIAKIGAF CCGLSLCNQH 201 250 ENSTTRP00000004340/1-707 TVVVYVLCII PWILFRLLKE KELSLGSLLK LGLYLSAGLL PYVYLPISSY ENSBTAP00000052546/1-705 TIVLYVLCII PWILFRLLKE KELSPGSLLK LSLCFSAGLL PYIYLPVSSY ENSP00000261556/1-707 TIILYVLCII PWILFQLLKK KELSLGSLLK LSLYFSAGLL PYVHLPISSY bmy_20138T0/1-602 TIVLYVLCII PWILFRLLKE E--------- ---------- ---------- 251 300 ENSTTRP00000004340/1-707 RHQARWTWGD QTTLPGFLTH FLREEYGTFS LXXXXXXXXX XXXXXSQVTN ENSBTAP00000052546/1-705 LNQARWTWGD QTTLLGFLTH FLREEYGTFS LAKSEIGSSM SEILLSQVTN ENSP00000261556/1-707 LNHARWTWGD QTTLQGFLTH FLREEYGTFS LAKSEIGSSM SEILLSQVTN bmy_20138T0/1-602 ---------- ---------- ---------- -AKSEIGSSM SEILLSQVTN 301 350 ENSTTRP00000004340/1-707 MRTQLSFNIQ ALAVWANICL VRKDRQNSSL VWLFTGMFCI YSLFFAWRAN ENSBTAP00000052546/1-705 MRTQLSFNIQ ALAVWANICL TRKDRQSPSL VWLFTGMFCI YSLFFAWRAN ENSP00000261556/1-707 MRTELSFNIQ ALAVCANICL ATKDRQNPSL VWLFTGMFCI YSLFFAWRAN bmy_20138T0/1-602 MRTQLSLNIQ ALAVWANICL VRKDRQNSSL VWLFTGMFCI YSLFFAWRAN 351 400 ENSTTRP00000004340/1-707 LDISKPLFMG VVERFWMQSN AVVAVLAGIG LAALVSESNR VLNTNGLQCL ENSBTAP00000052546/1-705 LDISKPLFMG VVSRFKLQST GSQRTVLGIF LSGLVSELPT LIQNSGTQSN ENSP00000261556/1-707 LDISKPLFMG VVERFWMQSN AVVAVLAGIG LAAVVSETNR VLNSNGLQCL bmy_20138T0/1-602 LDISKPLFMG VVERFWMQSN AVVAVLAGIG LAALVSESNR VLNTNGLQCL 401 450 ENSTTRP00000004340/1-707 EW-LSATLFV IYQIYSNYXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000052546/1-705 PWPLSSILCS SCVSYHRYII CDQRTNYVID KFAKNLLSSM PRDAIILLRG ENSP00000261556/1-707 EW-LSATLFV VYQIYSNYSV CDQRTNYVID KFAKNLLTSM PHDAIILLRG bmy_20138T0/1-602 EW-LSATLFV IYQIYSNYSI CDQRTNYVID KFAKNLLASM PHDAIILLRG 451 500 ENSTTRP00000004340/1-707 XXXXXXXXXX XXXXXXXXXX XXXXXXMMTY EWYLPKMAKH LPGVKFPGNR ENSBTAP00000052546/1-705 DLPGNSLRYM HYCEGLRPDI SLVDQEMMTY EWYLPKMAKH LPGVKFPGNR ENSP00000261556/1-707 DLPGNSLRYM HYCEGLRPDI SLVDQEMMTY EWYLPKMAKH LPGVNFPGNR bmy_20138T0/1-602 DLPGNSLRYM HYCEGLRPDI SLVDQEMMTY EWYLPKMAKH LPGVKFPGNR 501 550 ENSTTRP00000004340/1-707 WNPVEGILPS GMVTFNLYHF LEVNKLKETF VCIGIHEGDP TWKKNYSLWP ENSBTAP00000052546/1-705 WNPVEGILSS GMVTFNLYHF LEVNKQKETF VCIGIHEGDP TWKKNYSLWP ENSP00000261556/1-707 WNPVEGILPS GMVTFNLYHF LEVNKQKETF VCIGIHEGDP TWKKNYSLWP bmy_20138T0/1-602 WNPVEGILPS GMVTFNLYHF LEVNKLKETF VCIGIHEGDP TWKKNYSLWP 551 600 ENSTTRP00000004340/1-707 WGSCDKLVSS EIVFDPEEWI KLTRNIYNWT EDYGRFAPSS WESVANEEMW ENSBTAP00000052546/1-705 WGSCDKLVSS EIVFNPEEWI KLTRNIYNWT ESYGRFDPSS WESVANEEMW ENSP00000261556/1-707 WGSCDKLVPL EIVFNPEEWI KLTKSIYNWT EEYGRFDPSS WESVANEEMW bmy_20138T0/1-602 WGSCDKLVSS EIVFNPEEWI KLTRNIYNWT EDYGRFAPSS WESVANEEMW 601 650 ENSTTRP00000004340/1-707 QARMKTPFFI FNLAETASLP SNVKAQLYTH AYDLYKEIVY LRKEHPVNWH ENSBTAP00000052546/1-705 QARMKTPFFI FNLAESASLP SNVKAQLYTH AYNLYKEIVY LRKEHPVNWH ENSP00000261556/1-707 QARMKTPFFI FNLAETAHMP SKVKAQLYAQ AYDLYKEIVY LQKEHPVNWH bmy_20138T0/1-602 QARMKTPFFI FNLAETASLP SDVKAQLYTH AYNLYKEIVY LRKEHPVNWH 651 700 ENSTTRP00000004340/1-707 KNYAIACERM LRLRERGADP EVLLSETIRH FRLYTQKAQN DPQLADISVA ENSBTAP00000052546/1-705 KNYAISCERM LRLQERSADP EVLLSETIRH FRLYTRKAQN DPQLADISVA ENSP00000261556/1-707 KNYAIACERM LRLQARDADP EVLLSETIRH FRLYSQKAPN DPQQADILGA bmy_20138T0/1-602 KNYAIACERM LRLREKGADP EVLLSETIRH FXLYTQKAQN DPQLADISVA 701 750 ENSTTRP00000004340/1-707 LKHLRKELRS LRNMKNG ENSBTAP00000052546/1-705 LKHLRKELRS LRNMKNG ENSP00000261556/1-707 LKHLRKELQS LRNRKNV bmy_20138T0/1-602 LKHLRKELQS LRNMKNG