KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:51 2014 Check: 00 .. Name: ENSP00000289248/1-303 Len: 304 Check: 9361 Weight: 1.00 Name: ENSBTAP00000052684/1-303 Len: 304 Check: 3074 Weight: 1.00 Name: ENSTTRP00000009081/1-302 Len: 304 Check: 1292 Weight: 1.00 Name: bmy_02105T0/1-159 Len: 304 Check: 3039 Weight: 1.00 Name: BACU019589/1-303 Len: 304 Check: 2190 Weight: 1.00 // 1 50 ENSP00000289248/1-303 MAAVHDLEM- ESMNLNMGRE MKEELEEEEK MREDGGGKDR AKSKKVHRIV ENSBTAP00000052684/1-303 MAAAHDLEIE EDVNLNMETE MKEELEE-EK MREGRADKDP FKPRKVHRIV ENSTTRP00000009081/1-302 MAAAHNLEME EDVNLNRDRE MKEMLQE-EK LRADRAGKDP FRLKKVHRIV bmy_02105T0/1-159 MAAAHNLEME EDVNLNRDRE MKEMLEE-EK MREYRAGKDP FKPKKVHRIV BACU019589/1-303 MAAAHNLEME EDVNLNRDRE MKEMLEE-EK MREYRAGKDP FKPKKVHRIV 51 100 ENSP00000289248/1-303 SKWMLPEKSR GTYLERANCF PPPVFIISIS LAELAVFIYY AVWKPQKQWI ENSBTAP00000052684/1-303 SKWMLPESVR RTYLERANCL PPPLFIIFIS IAELAVFIYY AVWKPQKQWI ENSTTRP00000009081/1-302 SKWMLPEPVR RTYLERANCL PPPVFIISIS IAELAVFIYY AVWKPQKQWI bmy_02105T0/1-159 SKWMLPEPMR RTYLERANCL PPPVFIISIS IAELAAFIYY AVWKPQKQWI BACU019589/1-303 SKWMLPEPVQ RTYLERANCL PPPVFIISIS IAELAVFIYY AVWKPQEQWI 101 150 ENSP00000289248/1-303 TLDTGILESP FIYSPEKREE AWRFISYMLV HAGVQHILGN LCMQLVLGIP ENSBTAP00000052684/1-303 TLDTGILESP FIYRPEKREE AWRFISYMLV HAGVQHILGN LIMQLGLGIP ENSTTRP00000009081/1-302 TLDSGILESP FIYSPEKREE AWRFISYMLV HAGVQHILGN LVMQLVLGIP bmy_02105T0/1-159 TLDTGILESP FIYSPEKREE AWR------- ---VQHILGN LVMQLVLGIP BACU019589/1-303 TLDTGILESP FIYSPEKREE AWRFISYMLV HAGVQHILGN LVMQLVLGIP 151 200 ENSP00000289248/1-303 LEMVHKGLRV GLVYLAGVIA GSLASSIFDP LRYLVGASGG VYALMGGYFM ENSBTAP00000052684/1-303 LEMVHKGLRV GLVYLAGVIA GSLASSIFDP LKSLVGASGG VYALMGGYFM ENSTTRP00000009081/1-302 LEMVHKGLRV GLVYLAGVIA XXXXXXXXDP LKS-VGASGG VYALMGGYFM bmy_02105T0/1-159 LEMVHKGLRV GLVYLAGVIA ---------- ---------- ---------- BACU019589/1-303 LEMVHKGLRV GLVYLAGVIA GSLASSIFDP LKSLVGASGG VYALMGGYFM 201 250 ENSP00000289248/1-303 NVLVNFQEMI PAFGIFRLLI IILIIVLDMG FALYRRFFVP EDGSPVSFAA ENSBTAP00000052684/1-303 NVLVNFQEMI PAFGVVRLLI IVVIIVSDMG FALYRRFFVP ENGSPVSFAA ENSTTRP00000009081/1-302 NVLVNFREMI PAFGIIRLLI IILIIVSDMG FALYRRFFVP ANGSPVSFAA bmy_02105T0/1-159 ---------- ---------- ---------- ---------- ---------- BACU019589/1-303 NVLVNFREMI PAFGIIRLLI IVLIIVSDMG FALYRRFFVP ANGSPVSFAA 251 300 ENSP00000289248/1-303 HIAGGFAGMS IGYTVFSCFD KALLKDPRFW IAIAAYLACV LFAVFFNIFL ENSBTAP00000052684/1-303 HIAGGFAGMS IGYTVFSCFD QALLKDPRFW TAIAAYLAFV LFAVFFNIFL ENSTTRP00000009081/1-302 HIAGGFAGMS IGYTVFSCFD KALLKDPRFW IAIAAYLACV LFAVFFNIFL bmy_02105T0/1-159 ---------- ---------- ---------- ---------- ---------- BACU019589/1-303 HIAGGFAGMS IGYTVFSCFD KALLKDPRFW IAIAAYLACV LFAVFFNIFL 301 350 ENSP00000289248/1-303 SPAN ENSBTAP00000052684/1-303 SPAN ENSTTRP00000009081/1-302 SPAN bmy_02105T0/1-159 ---- BACU019589/1-303 SPAN